Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 8.9e-284 979.5 481 100.0
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 2.5e-270 934.9 484 95.5
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 7.1e-265 916.8 478 93.9
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 3.0e-255 884.8 484 89.5
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 1.4e-249 865.9 478 89.1
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 3.2e-249 864.8 484 87.4
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 3.5e-248 861.3 482 86.9
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 2.3e-247 858.6 469 88.9
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.5e-243 845.9 476 86.8
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 1.0e-234 816.6 484 84.5
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 7.7e-227 790.4 477 80.7
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 7.7e-227 790.4 482 80.3
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.1e-223 777.7 483 77.6
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 5.1e-223 777.7 469 79.7
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 2.6e-222 775.4 475 78.9
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 4.4e-222 774.6 471 80.3
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.4e-222 774.6 472 79.7
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 7.4e-222 773.9 472 78.8
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.7e-222 773.5 472 79.7
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 2.8e-221 771.9 465 81.1
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.4e-220 769.6 472 77.3
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 4.1e-220 768.1 474 77.2
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 5.3e-220 767.7 474 77.4
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 5.3e-220 767.7 482 76.3
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.0e-219 765.8 468 78.0
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 7.7e-219 763.8 474 77.8
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.0e-218 763.5 478 76.8
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.3e-218 763.1 471 78.8
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.7e-218 762.7 472 78.6
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.9e-218 761.9 469 77.8
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.9e-217 759.2 472 78.0
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.9e-217 759.2 417 90.2
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 3.2e-217 758.4 472 78.8
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.2e-216 756.5 477 77.1
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.4e-215 753.1 479 76.6
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 6.7e-215 750.7 467 77.1
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.1e-214 750.0 475 76.6
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 2.0e-214 749.2 484 75.2
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 3.3e-214 748.4 481 75.3
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.3e-213 746.5 469 79.1
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 6.3e-213 744.2 482 76.1
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.4e-212 743.0 476 75.6
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.4e-212 743.0 450 78.9
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.4e-212 743.0 472 76.5
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 5.3e-212 741.1 468 75.0
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 9.1e-212 740.3 476 73.9
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 1.5e-209 733.0 473 74.4
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 5.5e-209 731.1 471 73.0
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 1.2e-208 729.9 481 74.0
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 2.1e-208 729.2 478 72.6
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 7.5e-206 720.7 473 73.6
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 9.7e-206 720.3 470 74.3
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.2e-205 719.2 430 80.9
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.8e-205 718.8 452 76.8
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 8.3e-205 717.2 470 74.0
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 7.0e-204 714.1 468 73.5
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 7.7e-203 710.7 478 74.9
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 1.0e-202 710.3 471 73.2
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.9e-202 708.8 439 77.2
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 3.8e-202 708.4 479 72.7
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.5e-201 704.5 444 75.9
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 2.7e-200 702.2 541 65.1
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 3.6e-200 701.8 468 73.5
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 4.7e-200 701.4 481 72.1
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 8.0e-200 700.7 481 72.1
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.3e-199 699.1 469 72.9
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 4.0e-199 698.4 470 72.6
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 2.0e-198 696.0 482 71.2
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 6.3e-197 691.0 468 73.5
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 1.4e-196 689.9 471 70.5
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.4e-196 689.1 431 77.7
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 2.4e-196 689.1 467 70.7
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 9.1e-196 687.2 484 70.7
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 2.0e-195 686.0 483 71.4
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 5.9e-195 684.5 469 72.7
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 3.8e-194 681.8 468 72.2
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 6.6e-194 681.0 496 66.9
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.1e-193 680.2 367 89.4
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.5e-193 679.9 468 72.6
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.5e-193 679.9 470 71.9
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 1.9e-193 679.5 471 72.2
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.2e-193 678.3 469 72.1
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 3.6e-192 675.2 469 71.9
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 3.6e-192 675.2 468 72.0
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 4.7e-192 674.9 468 72.2
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 4.7e-192 674.9 469 72.1
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 4.7e-192 674.9 471 71.5
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.8e-191 672.9 465 72.0
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 5.2e-191 671.4 469 72.5
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 6.8e-191 671.0 468 72.0
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.5e-190 669.8 413 77.5
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.5e-190 669.8 469 71.4
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 3.4e-190 668.7 469 68.7
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.3e-189 666.8 468 72.0
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.3e-189 666.8 468 72.0
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.8e-188 662.9 426 74.6
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.8e-188 662.9 469 71.4
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 3.5e-187 658.7 465 68.4
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 4.5e-187 658.3 468 71.4
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 7.8e-187 657.5 481 68.4
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 7.8e-187 657.5 470 68.7
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 3.9e-186 655.2 469 69.1
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.6e-185 651.4 515 62.3
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.6e-184 649.8 473 67.9
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 8.3e-181 637.5 522 63.8
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.7e-179 632.5 440 71.8
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 5.8e-174 614.8 487 62.4
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 4.1e-172 608.6 469 65.7
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.8e-167 593.2 481 64.9
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.9e-165 585.1 350 78.9
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.0e-162 577.4 407 69.8
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 3.6e-160 568.9 509 57.0
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.2e-159 565.1 360 76.7
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 1.2e-155 553.9 492 58.1
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.6e-155 553.5 465 63.2
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 9.0e-151 537.7 473 59.2
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.4e-148 529.6 478 57.5
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.1e-135 487.6 465 53.1
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.7e-133 480.3 547 47.3
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.6e-128 463.8 467 54.0
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.9e-116 423.7 269 75.5
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 7.2e-116 421.8 326 68.7
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 2.9e-109 399.8 306 66.3
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.7e-107 393.3 227 83.3
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.0e-94 350.5 285 68.4
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 2.0e-94 350.5 479 43.8
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 5.4e-87 325.9 382 45.5
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.4e-87 325.9 203 75.4
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.7e-80 303.1 269 59.1
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 4.7e-75 286.2 481 36.2
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.9e-74 282.0 248 60.5
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 2.3e-69 267.3 502 37.5
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.3e-68 263.5 272 50.4
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 8.9e-66 255.4 473 38.5
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 2.5e-60 237.3 454 36.3
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.6e-57 227.3 174 66.1
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.2e-55 220.3 204 54.9
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.3e-53 214.9 291 44.0
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 3.9e-53 213.4 195 54.9
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.3e-52 210.3 178 61.2
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.4e-49 199.9 111 82.0
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.9e-49 198.7 111 81.1
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.1e-47 195.3 111 81.1
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 2.1e-46 191.0 202 54.0
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 3.5e-46 190.3 118 83.9
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 6.2e-43 179.5 107 76.6
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.5e-41 174.9 120 69.2
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.3e-39 165.6 111 70.3
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.0e-37 162.2 342 33.3
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 2.4e-34 151.0 92 73.9
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 9.0e-34 149.1 119 60.5
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 4.9e-32 143.3 76 90.8
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.2e-30 138.7 116 57.8
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.3e-27 128.6 67 89.6
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 4.6e-22 110.2 125 52.8
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 2.0e-17 94.7 58 77.6
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 9.6e-12 75.9 93 50.5
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 2.2e-08 64.7 39 76.9
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.8e-08 63.9 48 68.8
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 5.0e-08 63.5 46 63.0
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 6.5e-08 63.2 47 70.2
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.1e-07 62.4 37 75.7
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.4e-07 62.0 41 78.0


User provided reference genes

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