Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.4e-33 145.6 70 100.0
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 2.5e-25 118.2 71 83.1
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 1.2e-24 115.9 71 80.3
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 1.4e-23 112.5 71 78.9
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 4.8e-21 104.0 70 77.1
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 4.8e-21 104.0 70 77.1
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 6.3e-21 103.6 74 78.4
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 1.2e-19 99.4 70 72.9
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 1.2e-19 99.4 72 73.6
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 2.2e-18 95.1 70 71.4
Glyma.08G171000 Glycine max HOM05D002385 ORTHO05D002245 5.0e-18 94.0 74 66.2
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 8.5e-18 93.2 70 72.9
Lalb_Chr25g0284941 Lupinus albus HOM05D002385 ORTHO05D002245 3.6e-16 87.8 73 69.9
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 7.4e-14 80.1 73 53.4
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 9.7e-14 79.7 73 56.2
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 1.4e-12 75.9 62 59.7
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 2.4e-12 75.1 73 54.8
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 3.1e-12 74.7 70 57.1
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 1.6e-11 72.4 74 56.8
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 2.6e-11 71.6 77 55.8
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 4.5e-11 70.9 80 50.0
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 7.7e-11 70.1 76 51.3
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 2.2e-10 68.6 67 56.7
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 2.9e-10 68.2 65 55.4
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.9e-10 68.2 48 64.6
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 6.5e-10 67.0 72 50.0
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 8.5e-10 66.6 73 56.2
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 8.5e-10 66.6 75 52.0
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.1e-09 66.2 75 56.0
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 1.5e-09 65.9 71 52.1
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 1.9e-09 65.5 73 49.3
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 3.2e-09 64.7 71 54.9
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 3.2e-09 64.7 73 49.3
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 3.2e-09 64.7 72 51.4
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 4.2e-09 64.3 76 47.4
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 4.2e-09 64.3 72 52.8
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.5e-09 63.9 72 55.6
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 5.5e-09 63.9 75 52.0
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 7.2e-09 63.5 68 48.5
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 7.2e-09 63.5 62 53.2
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 7.2e-09 63.5 74 51.4
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 7.2e-09 63.5 74 51.4
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 7.2e-09 63.5 70 51.4
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 7.2e-09 63.5 75 49.3
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 9.4e-09 63.2 68 54.4
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 9.4e-09 63.2 65 52.3
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 9.4e-09 63.2 76 46.1
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 9.4e-09 63.2 76 46.1
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 9.4e-09 63.2 77 51.9
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.2e-08 62.8 70 48.6
HanXRQChr01g0017681 Helianthus annuus HOM05D002385 ORTHO05D002245 1.2e-08 62.8 58 51.7
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 1.2e-08 62.8 69 52.2
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 2.1e-08 62.0 67 49.3
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.1e-08 62.0 71 50.7
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 2.7e-08 61.6 74 50.0
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 3.6e-08 61.2 76 50.0
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 3.6e-08 61.2 76 50.0
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 3.6e-08 61.2 57 52.6
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.6e-08 61.2 63 54.0
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.6e-08 61.2 63 54.0
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.7e-08 60.8 70 47.1
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.7e-08 60.8 70 47.1
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 4.7e-08 60.8 70 48.6
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 4.7e-08 60.8 77 50.6
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 4.7e-08 60.8 54 59.3
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 4.7e-08 60.8 78 50.0
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 6.1e-08 60.5 80 41.2
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 6.1e-08 60.5 71 45.1
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 8.0e-08 60.1 48 56.2
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 8.0e-08 60.1 48 56.2
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 8.0e-08 60.1 59 50.8
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 8.0e-08 60.1 70 51.4
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 8.0e-08 60.1 72 51.4
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 1.0e-07 59.7 69 44.9
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 1.0e-07 59.7 71 49.3
Lalb_Chr20g0108741 Lupinus albus HOM05D002385 ORTHO05D002245 1.0e-07 59.7 77 44.2
arahy.Tifrunner.gnm1.ann1.7QB2HQ Arachis hypogaea HOM05D002385 ORTHO05D002245 1.8e-07 58.9 83 45.8
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 1.8e-07 58.9 59 50.8
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 1.8e-07 58.9 51 54.9
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 1.8e-07 58.9 59 57.6
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.8e-07 58.9 73 50.7
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 1.8e-07 58.9 75 49.3
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 2.3e-07 58.5 69 44.9
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 2.3e-07 58.5 72 51.4
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.3e-07 58.5 64 48.4
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 2.3e-07 58.5 70 51.4
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.0e-07 58.2 64 54.7
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 3.0e-07 58.2 66 51.5
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 4.0e-07 57.8 75 48.0
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 5.2e-07 57.4 76 47.4
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 5.2e-07 57.4 74 47.3
Sabra16G0021100 Salix brachista HOM05D002385 ORTHO05D002245 5.2e-07 57.4 60 48.3
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 6.7e-07 57.0 62 53.2
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 6.7e-07 57.0 76 43.4
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 8.8e-07 56.6 49 53.1
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 8.8e-07 56.6 49 53.1
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 8.8e-07 56.6 73 46.6
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 8.8e-07 56.6 73 49.3
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.2e-06 56.2 73 47.9
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 1.2e-06 56.2 48 58.3
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.2e-06 56.2 72 40.3
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 1.2e-06 56.2 70 52.9
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 1.5e-06 55.8 72 44.4
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 1.5e-06 55.8 72 47.2
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.5e-06 55.8 65 50.8
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 1.5e-06 55.8 71 52.1
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 1.5e-06 55.8 79 46.8
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 1.5e-06 55.8 80 43.8
HPP92_004187 Vanilla planifolia HOM05D002385 ORTHO05D002245 1.5e-06 55.8 86 44.2
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 2.0e-06 55.5 72 45.8
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.0e-06 55.5 68 45.6
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 2.0e-06 55.5 74 48.6
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.0e-06 55.5 73 49.3
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 2.0e-06 55.5 75 48.0
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 2.0e-06 55.5 70 45.7
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 2.0e-06 55.5 72 47.2
Lsat_1_v5_gn_1_82281 Lactuca sativa HOM05D019240 ORTHO05D002245 2.0e-06 55.5 77 50.6
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.0e-06 55.5 69 47.8
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.0e-06 55.5 74 50.0
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.6e-06 55.1 72 47.2
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 2.6e-06 55.1 72 47.2
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 2.6e-06 55.1 72 47.2
Duzib235G0963 Durio zibethinus HOM05D014462 ORTHO05D002245 2.6e-06 55.1 43 60.5
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 2.6e-06 55.1 78 44.9
Phvul.005G057400 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 2.6e-06 55.1 59 50.8
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 2.6e-06 55.1 51 56.9
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 2.6e-06 55.1 78 44.9
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 3.3e-06 54.7 79 45.6
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 3.3e-06 54.7 50 56.0
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 3.3e-06 54.7 50 56.0
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.3e-06 54.7 73 42.5
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.4e-06 54.3 50 56.0
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 4.4e-06 54.3 64 50.0
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 5.7e-06 53.9 68 44.1
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 5.7e-06 53.9 68 44.1
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 5.7e-06 53.9 68 44.1
CSS0046147 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 5.7e-06 53.9 63 52.4
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 5.7e-06 53.9 53 47.2
CiPaw.11G059800 Carya illinoinensis HOM05D014462 ORTHO05D018947 5.7e-06 53.9 73 42.5
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 5.7e-06 53.9 51 54.9
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.7e-06 53.9 72 51.4
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 7.5e-06 53.5 62 51.6
Eucgr.E01879 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.5e-06 53.5 50 56.0
Thhalv10009262m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 7.5e-06 53.5 70 44.3
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 7.5e-06 53.5 65 50.8
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 7.5e-06 53.5 48 54.2
Sp1g04210 Schrenkiella parvula HOM05D002385 ORTHO05D002245 7.5e-06 53.5 70 44.3
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 9.7e-06 53.1 76 46.1
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 9.7e-06 53.1 75 46.7
Manes.11G006500 Manihot esculenta HOM05D002385 ORTHO05D002245 9.7e-06 53.1 51 56.9
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 9.7e-06 53.1 72 45.8


User provided reference genes

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