Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 0.0e+00 2057.7 1012 100.0
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 0.0e+00 1761.9 1012 85.5
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 0.0e+00 1593.9 1013 77.5
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 0.0e+00 1562.4 1008 76.6
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 0.0e+00 1556.2 1008 76.7
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 0.0e+00 1550.4 1009 76.1
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 0.0e+00 1543.9 1011 75.8
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 0.0e+00 1504.6 839 88.8
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 0.0e+00 1500.3 1003 73.4
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 0.0e+00 1466.1 999 72.1
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 0.0e+00 1092.4 1038 53.1
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1075.8 1017 52.4
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 1.7e-308 1062.8 985 53.5
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 7.8e-306 1053.9 1006 53.1
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 4.9e-300 1034.6 1007 51.8
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 1.4e-299 1033.1 1002 51.7
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 7.1e-299 1030.8 1008 51.1
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.5e-298 1028.5 1008 51.3
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 4.3e-296 1021.5 996 51.4
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 1.6e-295 1019.6 1010 50.7
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 3.6e-295 1018.5 1015 51.0
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 9.3e-283 977.2 1010 48.5
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 6.7e-281 971.1 1003 49.9
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 1.4e-278 963.4 1028 48.9
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 2.6e-277 959.1 1024 48.7
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 4.9e-276 954.9 1010 48.9
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 8.4e-276 954.1 979 50.1
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 3.5e-274 948.7 999 48.9
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 2.3e-273 946.0 1013 48.3
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 2.8e-271 939.1 1021 48.4
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 6.9e-270 934.5 957 50.3
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 9.0e-270 934.1 891 53.0
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 7.4e-264 914.4 1000 46.0
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 4.7e-258 895.2 1018 45.7
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 2.3e-257 892.9 1001 45.8
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 3.7e-247 859.0 1014 44.9
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 8.2e-247 857.8 1015 44.6
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 1.8e-246 856.7 835 50.5
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 5.3e-246 855.1 996 44.5
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 2.6e-245 852.8 1016 44.2
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 1.3e-244 850.5 1021 44.3
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 3.2e-243 845.9 996 44.2
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 4.2e-243 845.5 995 44.7
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 3.6e-242 842.4 995 43.7
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 4.7e-242 842.0 1018 44.1
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 1.0e-241 840.9 997 44.1
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 1.7e-236 823.5 920 45.8
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 1.2e-234 817.4 1021 44.1
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 3.4e-232 809.3 997 42.9
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 8.3e-231 804.7 1020 43.4
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 9.1e-230 801.2 981 44.5
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 7.7e-229 798.1 1012 43.6
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 1.0e-228 797.7 998 42.6
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 2.5e-227 793.1 998 42.6
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 7.2e-227 791.6 997 42.4
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.6e-226 790.4 924 44.7
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 8.9e-225 784.6 1027 40.7
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 2.0e-224 783.5 739 51.4
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 5.7e-224 781.9 1004 41.1
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 6.3e-223 778.5 967 44.8
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 7.8e-221 771.5 1014 42.7
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 8.6e-220 768.1 999 42.1
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 1.9e-219 766.9 1018 41.5
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 7.3e-219 765.0 1001 42.0
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 3.4e-216 756.1 1002 42.2
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 1.9e-211 740.3 1026 42.3
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 2.1e-210 736.9 1012 41.7
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 1.3e-207 727.6 826 46.9
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 1.9e-206 723.8 1013 40.4
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 2.7e-205 719.9 1139 37.8
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 7.8e-205 718.4 997 39.4
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.4e-200 702.6 924 41.5
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 7.8e-197 691.8 999 39.1
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 1.5e-187 661.0 747 45.6
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 2.5e-187 660.2 1024 37.5
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.3e-183 647.9 830 42.9
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 6.4e-183 645.6 847 40.7
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 1.2e-181 641.3 996 37.0
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 4.6e-181 639.4 1007 37.7
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 7.8e-181 638.6 890 38.1
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.8e-177 627.5 742 42.3
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 8.1e-170 602.1 708 43.4
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 1.1e-169 601.7 1086 35.9
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 1.4e-169 601.3 711 43.9
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 6.0e-157 559.3 581 48.9
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 2.6e-152 543.9 799 39.0
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 2.0e-144 517.7 1029 32.8
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.3e-135 488.4 575 44.2
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 8.3e-122 442.6 754 36.7
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.9e-120 436.4 425 50.1
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 1.6e-117 428.3 890 32.1
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 4.0e-100 370.5 443 45.4
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.8e-92 345.1 494 43.9
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 5.4e-89 333.6 378 47.6
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 3.5e-80 304.3 1000 26.1
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 6.0e-80 303.5 934 27.0
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 8.6e-79 299.7 1061 24.8
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 3.2e-73 281.2 141 94.3
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 1.0e-71 276.2 208 58.7
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 3.4e-67 261.2 518 34.7
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 3.6e-61 241.1 152 76.3
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 5.8e-59 233.8 164 78.0
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 3.8e-58 231.1 148 82.4
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.4e-57 229.2 190 53.2
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 1.6e-56 225.7 232 53.4
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 2.5e-54 218.4 300 37.3
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 8.1e-53 213.4 253 45.1
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 1.7e-50 205.7 435 31.5
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 1.4e-49 202.6 235 44.7
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 2.3e-47 195.3 139 63.3
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 9.0e-44 183.3 231 42.0
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 1.3e-42 179.5 439 29.6
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 7.2e-41 173.7 214 53.3
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.7e-40 171.8 195 50.3
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.6e-35 155.2 178 44.9
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 8.5e-34 150.2 92 76.1
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 2.7e-32 145.2 127 63.0
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.8e-31 142.5 140 49.3
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 1.3e-26 126.3 113 54.9
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 4.7e-24 117.9 254 29.5
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 4.4e-22 111.3 68 80.9
Glyma.13G052500 Glycine max HOM05D005971 ORTHO05D007459 9.7e-22 110.2 66 80.3
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 4.8e-21 107.8 155 38.7
Glyma.13G098900 Glycine max HOM05D005971 ORTHO05D007459 8.2e-21 107.1 66 78.8
Glyma.13G099100 Glycine max HOM05D005971 ORTHO05D007459 1.1e-20 106.7 60 85.0
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 1.1e-12 80.1 102 39.2
Glyma.13G099002 Glycine max HOM05D032893 ORTHO05D007459 2.0e-11 75.9 67 64.2
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 5.0e-10 71.2 100 41.0
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 2.7e-08 65.5 45 62.2
Medtr2g082550 Medicago truncatula HOM05D000001 ORTHO05D010372 3.6e-08 65.1 47 66.0
Medtr2g073720 Medicago truncatula HOM05D005971 ORTHO05D007459 3.0e-07 62.0 145 35.2
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.7e-06 57.8 84 40.5
Glyma.13G098700 Glycine max HOM05D005971 ORTHO05D211495 7.5e-06 57.4 37 78.4


User provided reference genes

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