Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G045433 Phaseolus vulgaris HOM05D004459 ORTHO05D005178 1.1e-37 159.5 79 100.0
Phvul.007G143100 Phaseolus vulgaris HOM05D004459 ORTHO05D005178 1.3e-30 136.0 71 95.8
Phvul.008G132450 Phaseolus vulgaris HOM05D004459 ORTHO05D005178 3.8e-30 134.4 71 94.4
VMungo1383G0758 Vigna mungo HOM05D004459 ORTHO05D005178 4.9e-30 134.0 71 93.0
Glyma.08G347600 Glycine max HOM05D004459 ORTHO05D005178 6.4e-30 133.7 71 93.0
Cfa021481 Carpinus fangiana HOM05D004459 ORTHO05D005178 8.4e-30 133.3 71 91.5
Haze_03347 Corylus avellana HOM05D004459 ORTHO05D005178 8.4e-30 133.3 71 91.5
TAR365G0904 Trochodendron aralioides HOM05D004459 ORTHO05D005178 8.4e-30 133.3 71 93.0
RcHm_v2.0_Chr6g0283781 Rosa chinensis HOM05D004459 ORTHO05D005178 1.9e-29 132.1 71 90.1
Glyma.18G159000 Glycine max HOM05D004459 ORTHO05D005178 2.4e-29 131.7 71 91.5
Lj1g0001756 Lotus japonicus HOM05D004459 ORTHO05D005178 2.4e-29 131.7 71 91.5
Psat3g149520 Pisum sativum HOM05D004459 ORTHO05D005178 2.4e-29 131.7 71 91.5
Thecc.01G217400 Theobroma cacao HOM05D004459 ORTHO05D005178 2.4e-29 131.7 71 91.5
arahy.Tifrunner.gnm1.ann1.J5WB5S Arachis hypogaea HOM05D004459 ORTHO05D005178 3.2e-29 131.3 71 91.5
COL.COLO4_16102 Corchorus olitorius HOM05D004459 ORTHO05D005178 3.2e-29 131.3 71 90.1
Manes.13G050900 Manihot esculenta HOM05D004459 ORTHO05D005178 4.1e-29 131.0 71 90.1
TWI36G0336 Tripterygium wilfordii HOM05D004459 ORTHO05D005178 4.1e-29 131.0 71 91.5
Nitab4.5_0002671g0020 Nicotiana tabacum HOM05D004459 ORTHO05D005178 5.4e-29 130.6 71 88.7
Prupe.8G196700 Prunus persica HOM05D004459 ORTHO05D005178 5.4e-29 130.6 71 88.7
Solyc06g083260.3 Solanum lycopersicum HOM05D004459 ORTHO05D005178 5.4e-29 130.6 71 88.7
Sopen06g034640 Solanum pennellii HOM05D004459 ORTHO05D005178 5.4e-29 130.6 71 88.7
PGSC0003DMG401020104 Solanum tuberosum HOM05D004459 ORTHO05D005178 5.4e-29 130.6 71 88.7
MD10G1158300 Malus domestica HOM05D004459 ORTHO05D005178 7.1e-29 130.2 71 88.7
Dinv14524 Davidia involucrata HOM05D004459 ORTHO05D005178 9.2e-29 129.8 71 88.7
ECA236G4121 Erigeron canadensis HOM05D004459 ORTHO05D005178 9.2e-29 129.8 71 90.1
MD10G1157700 Malus domestica HOM05D004459 ORTHO05D005178 9.2e-29 129.8 71 88.7
TPR.G6416 Trifolium pratense HOM05D004459 ORTHO05D005178 9.2e-29 129.8 71 90.1
Nitab4.5_0003020g0110 Nicotiana tabacum HOM05D004459 ORTHO05D005178 1.2e-28 129.4 71 87.3
CSS0012359 Camellia sinensis var. sinensis HOM05D004459 ORTHO05D005178 1.6e-28 129.0 71 88.7
Ciclev10021820m.g Citrus clementina HOM05D004459 ORTHO05D005178 1.6e-28 129.0 71 88.7
Duzib133G1079 Durio zibethinus HOM05D004459 ORTHO05D005178 1.6e-28 129.0 71 90.1
Gohir.A11G140100 Gossypium hirsutum HOM05D004459 ORTHO05D005178 2.1e-28 128.6 71 90.1
Gohir.D11G146500 Gossypium hirsutum HOM05D004459 ORTHO05D005178 2.1e-28 128.6 71 90.1
Gorai.007G156900 Gossypium raimondii HOM05D004459 ORTHO05D005178 2.1e-28 128.6 71 90.1
HanXRQChr04g0108291 Helianthus annuus HOM05D004459 ORTHO05D005178 2.1e-28 128.6 71 88.7
Potri.002G246800 Populus trichocarpa HOM05D004459 ORTHO05D005178 2.1e-28 128.6 71 85.9
Atru.chr6.1442 Acer truncatum HOM05D004459 ORTHO05D005178 2.7e-28 128.3 71 88.7
DCAR_000515 Daucus carota HOM05D004459 ORTHO05D005178 2.7e-28 128.3 71 88.7
Peaxi162Scf00487g00620 Petunia axillaris HOM05D004459 ORTHO05D005178 2.7e-28 128.3 71 87.3
QL02p059745 Quercus lobata HOM05D004459 ORTHO05D005178 3.5e-28 127.9 74 87.8
QL02p059784 Quercus lobata HOM05D004459 ORTHO05D005178 3.5e-28 127.9 74 87.8
Cc01_g16560 Coffea canephora HOM05D004459 ORTHO05D005178 4.6e-28 127.5 71 87.3
Medtr7g055650 Medicago truncatula HOM05D004459 ORTHO05D005178 4.6e-28 127.5 71 88.7
Actinidia09461 Actinidia chinensis HOM05D004459 ORTHO05D005178 6.0e-28 127.1 71 85.9
Lalb_Chr01g0022191 Lupinus albus HOM05D004459 ORTHO05D005178 6.0e-28 127.1 71 88.7
SGA_v2.0_scaffold104G30089 Striga asiatica HOM05D004459 ORTHO05D005178 6.0e-28 127.1 71 87.3
FvH4_2g18390 Fragaria vesca HOM05D004459 ORTHO05D005178 7.8e-28 126.7 71 84.5
FAN24G3552 Fragaria x ananassa HOM05D004459 ORTHO05D005178 7.8e-28 126.7 71 84.5
FAN27G2700 Fragaria x ananassa HOM05D004459 ORTHO05D005178 7.8e-28 126.7 71 84.5
Gohir.D07G096900 Gossypium hirsutum HOM05D004459 ORTHO05D005178 7.8e-28 126.7 71 87.3
Gorai.001G104300 Gossypium raimondii HOM05D004459 ORTHO05D005178 7.8e-28 126.7 71 87.3
Duzib138G0860 Durio zibethinus HOM05D004459 ORTHO05D005178 1.0e-27 126.3 71 87.3
FAN15G2342 Fragaria x ananassa HOM05D004459 ORTHO05D005178 1.0e-27 126.3 71 83.1
Gohir.A07G092400 Gossypium hirsutum HOM05D004459 ORTHO05D005178 1.0e-27 126.3 71 87.3
Nitab4.5_0005866g0010 Nicotiana tabacum HOM05D004459 ORTHO05D005178 1.0e-27 126.3 71 84.5
Aqoxy2G03940 Aquilegia oxysepala HOM05D004459 ORTHO05D005178 1.3e-27 125.9 71 87.3
PSO017G6853 Papaver somniferum HOM05D004459 ORTHO05D005178 1.3e-27 125.9 71 87.3
PSO063G5689 Papaver somniferum HOM05D004459 ORTHO05D005178 1.3e-27 125.9 71 87.3
Nn3g20066 Nelumbo nucifera HOM05D004459 ORTHO05D005178 1.7e-27 125.6 71 85.9
Actinidia23765 Actinidia chinensis HOM05D004459 ORTHO05D005178 2.3e-27 125.2 71 84.5
MSTRG.17987 Avicennia marina HOM05D004459 ORTHO05D005178 2.3e-27 125.2 71 85.9
MSTRG.20974 Avicennia marina HOM05D004459 ORTHO05D005178 2.3e-27 125.2 71 85.9
Sabra02G0187900 Salix brachista HOM05D004459 ORTHO05D005178 3.0e-27 124.8 71 84.5
CANSAT01G2987 Cannabis sativa HOM05D004459 ORTHO05D005178 6.6e-27 123.6 71 85.9
CiPaw.14G040200 Carya illinoinensis HOM05D004459 ORTHO05D005178 6.6e-27 123.6 74 83.8
CAN.G874.13 Capsicum annuum HOM05D004459 ORTHO05D005178 8.7e-27 123.2 71 83.1
vmacro14724 Vaccinium macrocarpon HOM05D004459 ORTHO05D005178 8.7e-27 123.2 71 83.1
Nitab4.5_0000403g0040 Nicotiana tabacum HOM05D004459 ORTHO05D005178 1.1e-26 122.9 71 83.1
Eucgr.H00759 Eucalyptus grandis HOM05D004459 ORTHO05D005178 1.5e-26 122.5 71 81.7
Lalb_Chr19g0125891 Lupinus albus HOM05D004459 ORTHO05D005178 1.5e-26 122.5 71 84.5
Potri.014G194900 Populus trichocarpa HOM05D004459 ORTHO05D005178 1.5e-26 122.5 71 81.7
QL02p043717 Quercus lobata HOM05D002263 ORTHO05D012916 1.5e-26 122.5 85 77.6
Hma1.2p1_0149F.1_g066510 Hydrangea macrophylla HOM05D004459 ORTHO05D005178 3.3e-26 121.3 71 83.1
Lsat_1_v5_gn_5_177641 Lactuca sativa HOM05D004459 ORTHO05D005178 3.3e-26 121.3 71 83.1
PGR083G1823 Punica granatum HOM05D004459 ORTHO05D005178 3.3e-26 121.3 71 83.1
MBI07_g27657_MAGBIO Magnolia biondii HOM05D004459 ORTHO05D005178 4.3e-26 120.9 72 86.1
GSVIVG01006388001 Vitis vinifera HOM05D004459 ORTHO05D005178 4.3e-26 120.9 71 84.5
ClCG02G000030 Citrullus lanatus HOM05D004459 ORTHO05D005178 5.6e-26 120.6 71 83.1
CsaV3_2G019680 Cucumis sativus L. HOM05D004459 ORTHO05D005178 5.6e-26 120.6 71 83.1
Thhalv10004803m.g Eutrema salsugineum HOM05D004459 ORTHO05D005178 5.6e-26 120.6 71 81.7
AL293U10030 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 7.3e-26 120.2 71 80.3
AL8G21650 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 7.3e-26 120.2 71 80.3
BcaC03g17667 Brassica carinata HOM05D004459 ORTHO05D005178 7.3e-26 120.2 71 80.3
A02p37650 Brassica napus HOM05D004459 ORTHO05D005178 7.3e-26 120.2 71 80.3
C02p56740 Brassica napus HOM05D004459 ORTHO05D005178 7.3e-26 120.2 71 80.3
BolC2t11742H Brassica oleracea HOM05D004459 ORTHO05D005178 7.3e-26 120.2 71 80.3
BraA02t08747Z Brassica rapa HOM05D004459 ORTHO05D005178 7.3e-26 120.2 71 80.3
Ah.08g214750 Amaranthus hybridus HOM05D004459 ORTHO05D005178 9.6e-26 119.8 72 81.9
AT5G48630 Arabidopsis thaliana HOM05D004459 ORTHO05D005178 9.6e-26 119.8 71 80.3
Os09g0504400 Oryza sativa ssp. japonica HOM05D004459 ORTHO05D005178 9.6e-26 119.8 72 84.7
Sed0021622 Sechium edule HOM05D004459 ORTHO05D005178 9.6e-26 119.8 71 81.7
THA.LOC104822487 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 9.6e-26 119.8 71 78.9
Zm00001eb317580 Zea mays HOM05D004459 ORTHO05D005178 9.6e-26 119.8 71 80.3
BcaB07g30037 Brassica carinata HOM05D004459 ORTHO05D005178 1.2e-25 119.4 71 80.3
THA.LOC104822488 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 1.2e-25 119.4 71 80.3
EL10Ac5g11649 Beta vulgaris HOM05D004459 ORTHO05D005178 1.6e-25 119.0 72 80.6
EL10Ac7g17932 Beta vulgaris HOM05D004459 ORTHO05D005178 1.6e-25 119.0 72 80.6
Carub.0005s0820 Capsella rubella HOM05D004459 ORTHO05D005178 2.1e-25 118.6 71 78.9
CiPaw.13G050600 Carya illinoinensis HOM05D004459 ORTHO05D005178 2.1e-25 118.6 77 80.5
Carub.0008s0830 Capsella rubella HOM05D004459 ORTHO05D005178 2.8e-25 118.2 71 77.5
SalBow6G5468 Salvia bowleyana HOM05D004459 ORTHO05D005178 3.6e-25 117.9 71 81.7
Sc05g0001910 Simmondsia chinensis HOM05D004459 ORTHO05D005178 3.6e-25 117.9 71 83.1
CARHR183330 Cardamine hirsuta HOM05D004459 ORTHO05D005178 4.7e-25 117.5 71 77.5
Sp2g19010 Schrenkiella parvula HOM05D004459 ORTHO05D005178 4.7e-25 117.5 71 78.9
HanXRQChr01g0015361 Helianthus annuus HOM05D004459 ORTHO05D005178 6.2e-25 117.1 71 80.3
ECA248G3763 Erigeron canadensis HOM05D004459 ORTHO05D005178 1.1e-24 116.3 71 78.9
ATR0561G002 Amborella trichopoda HOM05D004459 ORTHO05D005178 1.4e-24 115.9 71 76.1
SMO147G0024 Selaginella moellendorffii HOM05D004459 ORTHO05D005178 3.1e-24 114.8 71 77.5
AL8G21660 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 9.0e-24 113.2 71 78.9
AT5G48640 Arabidopsis thaliana HOM05D004459 ORTHO05D005178 9.0e-24 113.2 71 78.9
Mapoly0005s0080 Marchantia polymorpha HOM05D004459 ORTHO05D005178 1.7e-22 109.0 70 74.3
Thhalv10004814m.g Eutrema salsugineum HOM05D004459 ORTHO05D005178 2.2e-22 108.6 71 78.9
Carub.0008s0831 Capsella rubella HOM05D004459 ORTHO05D005178 3.8e-22 107.8 71 78.9
Sp2g19020 Schrenkiella parvula HOM05D004459 ORTHO05D005178 6.4e-22 107.1 71 77.5
Carub.0005s0821 Capsella rubella HOM05D004459 ORTHO05D005178 8.4e-22 106.7 71 77.5
MD05G1169500 Malus domestica HOM05D004459 ORTHO05D005178 1.9e-21 105.5 68 82.4
SHI14518 Sapria himalayana HOM05D004459 ORTHO05D005178 4.2e-21 104.4 111 55.0
unitig_0.g407 Utricularia gibba HOM05D004459 ORTHO05D005178 4.2e-21 104.4 71 77.5
AagrBONN_evm.TU.Sc2ySwM_344.4413 Anthoceros agrestis HOM05D004459 ORTHO05D005178 5.4e-21 104.0 73 69.9
BcaC03g17668 Brassica carinata HOM05D004459 ORTHO05D005178 5.4e-21 104.0 71 71.8
C02p56750 Brassica napus HOM05D004459 ORTHO05D005178 5.4e-21 104.0 71 71.8
BolC2t11743H Brassica oleracea HOM05D004459 ORTHO05D005178 5.4e-21 104.0 71 71.8
Pp3c23_12870 Physcomitrium patens HOM05D004459 ORTHO05D005178 5.4e-21 104.0 80 68.8
Pp3c24_1910 Physcomitrium patens HOM05D004459 ORTHO05D005178 5.4e-21 104.0 80 67.5
BraA02t08748Z Brassica rapa HOM05D004459 ORTHO05D005178 7.1e-21 103.6 71 70.4
BcaC06g30774 Brassica carinata HOM05D004459 ORTHO05D005178 3.5e-20 101.3 71 73.2
A06p39040 Brassica napus HOM05D004459 ORTHO05D005178 3.5e-20 101.3 71 73.2
C07p39300 Brassica napus HOM05D004459 ORTHO05D005178 3.5e-20 101.3 71 73.2
BraA06t26817Z Brassica rapa HOM05D004459 ORTHO05D005178 3.5e-20 101.3 71 73.2
Lsat_1_v5_gn_3_115720 Lactuca sativa HOM05D004459 ORTHO05D005178 3.5e-20 101.3 71 76.1
BolC7t44450H Brassica oleracea HOM05D004459 ORTHO05D005178 1.0e-19 99.8 71 71.8
Migut.D02511 Erythranthe guttata HOM05D004459 ORTHO05D005178 1.0e-19 99.8 60 81.7
HPP92_001407 Vanilla planifolia HOM05D004459 ORTHO05D005178 1.0e-19 99.8 71 74.6
BcaB07g30038 Brassica carinata HOM05D004459 ORTHO05D005178 1.3e-19 99.4 71 69.0
Aa31LG6G9700 Aethionema arabicum HOM05D004459 ORTHO05D005178 3.9e-19 97.8 71 71.8
A02p37660 Brassica napus HOM05D004459 ORTHO05D005178 5.1e-19 97.4 71 69.0
THA.LOC104818977 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 2.8e-17 91.7 108 49.1
QL08p003462 Quercus lobata HOM05D002263 ORTHO05D012916 4.9e-14 80.9 42 92.9
AUR62001146 Chenopodium quinoa HOM05D004459 ORTHO05D005178 1.2e-12 76.3 71 57.7
AUR62016530 Chenopodium quinoa HOM05D004459 ORTHO05D005178 1.6e-12 75.9 71 57.7
CAN.G1010.2 Capsicum annuum HOM05D004459 ORTHO05D005178 1.3e-11 72.8 45 80.0
Hund05584 Selenicereus undatus HOM05D004459 ORTHO05D005178 7.4e-10 67.0 37 83.8
PRCOL_00002525 Prasinoderma coloniale HOM05D004459 ORTHO05D005178 6.9e-08 60.5 69 50.7
QL03p030217 Quercus lobata HOM05D000176 ORTHO05D000106 6.9e-08 60.5 30 96.7
Cre03.g174476 Chlamydomonas reinhardtii HOM05D004459 ORTHO05D005178 9.0e-08 60.1 67 52.2
QL08p021041 Quercus lobata HOM05D002263 ORTHO05D012916 2.6e-07 58.5 28 100.0
QL08p037214 Quercus lobata HOM05D002263 ORTHO05D005465 2.6e-07 58.5 28 100.0


User provided reference genes

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