Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G044800 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 4.9e-85 317.8 162 100.0
Phvul.006G191400 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 1.2e-67 260.0 170 82.4
Phvul.010G059600 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 3.8e-45 185.3 169 61.5
Phvul.007G129300 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 2.2e-40 169.5 162 61.7
Phvul.L003637 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 2.2e-37 159.5 97 84.5
Phvul.007G143500 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 3.1e-31 139.0 182 43.4
Phvul.005G096800 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 1.6e-30 136.7 182 41.2
Phvul.001G105000 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 3.5e-30 135.6 182 40.7
Phvul.008G122133 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 1.5e-28 130.2 107 59.8
Phvul.009G015800 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 7.0e-23 111.3 99 57.6
Phvul.007G155600 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 2.7e-22 109.4 80 75.0
TPR.G17919 Trifolium pratense HOM05D011527 ORTHO05D009491 1.7e-21 106.7 134 41.8
TPR.G35040 Trifolium pratense HOM05D011524 ORTHO05D009491 1.7e-21 106.7 134 41.8
TPR.G19823 Trifolium pratense HOM05D011527 ORTHO05D009491 3.8e-21 105.5 150 41.3
TPR.G26714 Trifolium pratense HOM05D011524 ORTHO05D009491 5.0e-21 105.1 109 49.5
Phvul.006G016100 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 1.9e-20 103.2 88 58.0
Phvul.001G109800 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 3.2e-20 102.4 177 37.3
Medtr4g036240 Medicago truncatula HOM05D000353 ORTHO05D000174 7.2e-20 101.3 148 41.9
Medtr6g445520 Medicago truncatula HOM05D000353 ORTHO05D000174 7.2e-20 101.3 199 33.7
Phvul.003G117700 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 7.2e-20 101.3 162 42.6
Medtr2g008650 Medicago truncatula HOM05D000353 ORTHO05D000174 9.4e-20 100.9 172 36.0
Medtr8g479260 Medicago truncatula HOM05D000353 ORTHO05D000174 9.4e-20 100.9 172 36.0
Medtr3g056270 Medicago truncatula HOM05D000353 ORTHO05D000174 1.6e-19 100.1 148 41.2
Phvul.005G095200 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 2.3e-18 96.3 72 73.6
TPR.G40139 Trifolium pratense HOM05D000096 ORTHO05D000045 2.3e-18 96.3 173 29.5
Medtr2g048560 Medicago truncatula HOM05D000353 ORTHO05D000174 4.4e-17 92.0 109 37.6
TPR.G36881 Trifolium pratense HOM05D011524 ORTHO05D009491 4.4e-17 92.0 144 36.1
TPR.G34472 Trifolium pratense HOM05D011524 ORTHO05D009491 5.7e-17 91.7 111 44.1
Lj3g0013474 Lotus japonicus HOM05D000353 ORTHO05D000174 1.3e-16 90.5 116 43.1
TPR.G34060 Trifolium pratense HOM05D011527 ORTHO05D009491 3.7e-16 89.0 165 32.1
TPR.G20476 Trifolium pratense HOM05D011524 ORTHO05D009491 6.3e-16 88.2 111 41.4
TPR.G30051 Trifolium pratense HOM05D000023 ORTHO05D009491 1.1e-15 87.4 129 34.1
LjContig00155g0001945 Lotus japonicus HOM05D000353 ORTHO05D000174 3.1e-15 85.9 114 34.2
Lj6g0004966 Lotus japonicus HOM05D011527 ORTHO05D009491 4.5e-14 82.0 111 40.5
Lj3g0020532 Lotus japonicus HOM05D031098 ORTHO05D015701 7.7e-14 81.3 200 28.0
Lj5g0012270 Lotus japonicus HOM05D007499 ORTHO05D000174 2.9e-13 79.3 108 35.2
CAN.G1305.28 Capsicum annuum HOM05D002441 ORTHO05D002376 1.6e-11 73.6 105 37.1
Lj3g0013581 Lotus japonicus HOM05D007499 ORTHO05D000174 1.6e-11 73.6 108 32.4
Lj6g0022193 Lotus japonicus HOM05D010643 ORTHO05D013332 2.1e-11 73.2 95 35.8
TPR.G16855 Trifolium pratense HOM05D007499 ORTHO05D009491 2.7e-11 72.8 179 30.7
TPR.G19260 Trifolium pratense HOM05D007499 ORTHO05D009491 3.6e-11 72.4 134 32.1
Lj6g0015228 Lotus japonicus HOM05D007499 ORTHO05D000174 4.7e-11 72.0 141 30.5
Lj4g0000768 Lotus japonicus HOM05D007499 ORTHO05D000174 6.1e-11 71.6 136 28.7
Medtr8g062030 Medicago truncatula HOM05D000353 ORTHO05D000174 6.1e-11 71.6 107 33.6
TPR.G27579 Trifolium pratense HOM05D007499 ORTHO05D009491 6.1e-11 71.6 110 33.6
TPR.G26497 Trifolium pratense HOM05D007499 ORTHO05D009491 8.0e-11 71.2 178 29.2
TPR.G15524 Trifolium pratense HOM05D007499 ORTHO05D009491 1.4e-10 70.5 143 30.8
Lj1g0016702 Lotus japonicus HOM05D007499 ORTHO05D000174 1.8e-10 70.1 109 32.1
Lj1g0026764 Lotus japonicus HOM05D029886 ORTHO05D030008 1.8e-10 70.1 159 32.7
Lj3g0016345 Lotus japonicus HOM05D000353 ORTHO05D000174 1.8e-10 70.1 77 42.9
Peaxi162Scf00347g00918 Petunia axillaris HOM05D002441 ORTHO05D002376 1.8e-10 70.1 188 27.7
arahy.Tifrunner.gnm1.ann1.CPRZ31 Arachis hypogaea HOM05D000353 ORTHO05D000174 4.0e-10 68.9 112 35.7
arahy.Tifrunner.gnm1.ann1.Y6YSHD Arachis hypogaea HOM05D000353 ORTHO05D000174 4.0e-10 68.9 112 35.7
LjContig00141g0027033 Lotus japonicus HOM05D007499 ORTHO05D000174 4.0e-10 68.9 119 30.3
TPR.G7855 Trifolium pratense HOM05D000096 ORTHO05D000045 5.2e-10 68.6 80 41.2
Medtr5g078250 Medicago truncatula HOM05D000353 ORTHO05D000174 6.8e-10 68.2 135 29.6
Peaxi162Scf00706g00120 Petunia axillaris HOM05D002441 ORTHO05D002376 8.8e-10 67.8 188 27.7
Peaxi162Scf11584g00003 Petunia axillaris HOM05D002441 ORTHO05D002376 8.8e-10 67.8 188 27.1
arahy.Tifrunner.gnm1.ann1.AKH4BK Arachis hypogaea HOM05D000353 ORTHO05D000174 1.2e-09 67.4 112 34.8
arahy.Tifrunner.gnm1.ann1.IYP2GG Arachis hypogaea HOM05D000353 ORTHO05D000174 1.2e-09 67.4 112 34.8
arahy.Tifrunner.gnm1.ann1.J9NJUF Arachis hypogaea HOM05D000353 ORTHO05D000174 1.2e-09 67.4 112 34.8
arahy.Tifrunner.gnm1.ann1.SFEY24 Arachis hypogaea HOM05D000353 ORTHO05D000174 1.2e-09 67.4 108 33.3
Peaxi162Scf00429g00624 Petunia axillaris HOM05D002441 ORTHO05D002376 1.2e-09 67.4 188 28.2
Peaxi162Scf00261g00059 Petunia axillaris HOM05D002441 ORTHO05D002376 1.5e-09 67.0 188 27.1
Peaxi162Scf00385g00619 Petunia axillaris HOM05D002441 ORTHO05D002376 1.5e-09 67.0 197 27.9
arahy.Tifrunner.gnm1.ann1.LSFF47 Arachis hypogaea HOM05D000353 ORTHO05D000174 4.4e-09 65.5 112 33.9
Nitab4.5_0026419g0010 Nicotiana tabacum HOM05D002441 ORTHO05D002376 5.7e-09 65.1 109 34.9
Nitab4.5_0000992g0110 Nicotiana tabacum HOM05D002441 ORTHO05D002376 9.8e-09 64.3 109 33.0
TPR.G8670 Trifolium pratense HOM05D007499 ORTHO05D009491 1.3e-08 63.9 108 29.6
TPR.G8849 Trifolium pratense HOM05D007499 ORTHO05D009491 1.3e-08 63.9 107 32.7
Peaxi162Scf00103g00815 Petunia axillaris HOM05D002441 ORTHO05D002376 1.7e-08 63.5 188 26.6
Lj1g0004030 Lotus japonicus HOM05D000353 ORTHO05D000174 2.2e-08 63.2 51 54.9
Medtr4g040040 Medicago truncatula HOM05D011527 ORTHO05D000174 2.8e-08 62.8 113 29.2
arahy.Tifrunner.gnm1.ann1.H3FPA3 Arachis hypogaea HOM05D010000 ORTHO05D009491 3.7e-08 62.4 109 35.8
Medtr0042s0170 Medicago truncatula HOM05D007499 ORTHO05D009491 3.7e-08 62.4 107 29.0
Medtr1g115520 Medicago truncatula HOM05D002441 ORTHO05D002376 3.7e-08 62.4 117 34.2
EL10Ac7g16273 Beta vulgaris HOM05D000353 ORTHO05D000174 4.9e-08 62.0 183 25.1
HanXRQChr09g0260311 Helianthus annuus HOM05D000353 ORTHO05D000174 4.9e-08 62.0 170 23.5
Lj4g0023858 Lotus japonicus HOM05D020041 ORTHO05D030020 4.9e-08 62.0 106 37.7
Medtr2g048550 Medicago truncatula HOM05D000353 ORTHO05D000174 6.3e-08 61.6 111 34.2
Peaxi162Scf00006g02913 Petunia axillaris HOM05D002441 ORTHO05D002376 6.3e-08 61.6 185 29.2
Lj5g0027118 Lotus japonicus HOM05D007499 ORTHO05D010522 8.3e-08 61.2 110 34.5
SGA_v2.0_scaffold28G11887 Striga asiatica HOM05D002441 ORTHO05D000174 8.3e-08 61.2 163 25.8
TPR.G27599 Trifolium pratense HOM05D007499 ORTHO05D009491 8.3e-08 61.2 109 31.2
Ah.05g169550 Amaranthus hybridus HOM05D002441 ORTHO05D002376 1.1e-07 60.8 168 27.4
arahy.Tifrunner.gnm1.ann1.1SE4IN Arachis hypogaea HOM05D012160 ORTHO05D009491 1.1e-07 60.8 106 34.0
arahy.Tifrunner.gnm1.ann1.CT1CGZ Arachis hypogaea HOM05D007499 ORTHO05D009491 1.1e-07 60.8 109 32.1
arahy.Tifrunner.gnm1.ann1.GFA6QK Arachis hypogaea HOM05D007499 ORTHO05D009491 1.1e-07 60.8 109 33.0
Peaxi162Scf00602g00313 Petunia axillaris HOM05D002441 ORTHO05D002376 1.1e-07 60.8 175 28.6
TPR.G17763 Trifolium pratense HOM05D007499 ORTHO05D009491 1.1e-07 60.8 109 31.2
BcaB08g34954 Brassica carinata HOM05D000353 ORTHO05D000174 1.4e-07 60.5 185 27.6
Thhalv10029348m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 1.4e-07 60.5 170 26.5
Psat1g061440 Pisum sativum HOM05D005144 ORTHO05D006112 1.4e-07 60.5 50 52.0
TPR.G38734 Trifolium pratense HOM05D027356 ORTHO05D009491 1.4e-07 60.5 109 30.3
arahy.Tifrunner.gnm1.ann1.8R9H6F Arachis hypogaea HOM05D002441 ORTHO05D002376 1.8e-07 60.1 139 27.3
Nitab4.5_0004863g0020 Nicotiana tabacum HOM05D002441 ORTHO05D002376 1.8e-07 60.1 155 25.8
TPR.G38513 Trifolium pratense HOM05D007499 ORTHO05D009491 1.8e-07 60.1 109 31.2
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.4e-07 59.7 145 28.3
TPR.G10066 Trifolium pratense HOM05D011527 ORTHO05D009491 2.4e-07 59.7 47 53.2
TPR.G39019 Trifolium pratense HOM05D007499 ORTHO05D009491 2.4e-07 59.7 102 34.3
arahy.Tifrunner.gnm1.ann1.9DML6S Arachis hypogaea HOM05D002441 ORTHO05D002376 4.1e-07 58.9 139 27.3
Thhalv10000499m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 4.1e-07 58.9 170 26.5
Lj3g0007426 Lotus japonicus HOM05D007499 ORTHO05D010522 5.4e-07 58.5 112 30.4
PGSC0003DMG400007030 Solanum tuberosum HOM05D002441 ORTHO05D002513 5.4e-07 58.5 107 28.0
TPR.G14905 Trifolium pratense HOM05D007499 ORTHO05D009491 5.4e-07 58.5 107 33.6
Thhalv10029167m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 9.2e-07 57.8 170 25.9
Lj1g0024942 Lotus japonicus HOM05D007499 ORTHO05D010522 9.2e-07 57.8 106 32.1
Medtr5g057125 Medicago truncatula HOM05D000353 ORTHO05D002376 9.2e-07 57.8 154 30.5
Peaxi162Scf00010g01319 Petunia axillaris HOM05D002441 ORTHO05D002376 9.2e-07 57.8 110 30.0
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 9.2e-07 57.8 142 28.9
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 1.2e-06 57.4 112 36.6
TPR.G30682 Trifolium pratense HOM05D000096 ORTHO05D000045 1.2e-06 57.4 69 43.5
TPR.G33583 Trifolium pratense HOM05D011527 ORTHO05D009491 1.2e-06 57.4 108 30.6
Glyma.05G083400 Glycine max HOM05D000353 ORTHO05D000174 1.6e-06 57.0 93 34.4
CAN.G358.51 Capsicum annuum HOM05D002441 ORTHO05D002376 2.0e-06 56.6 186 24.7
Medtr4g032585 Medicago truncatula HOM05D000353 ORTHO05D002376 2.0e-06 56.6 112 30.4
TPR.G16048 Trifolium pratense HOM05D001993 ORTHO05D004040 2.0e-06 56.6 107 30.8
arahy.Tifrunner.gnm1.ann1.G9S7AV Arachis hypogaea HOM05D002441 ORTHO05D002376 2.7e-06 56.2 160 26.9
arahy.Tifrunner.gnm1.ann1.PUQ8PF Arachis hypogaea HOM05D002441 ORTHO05D002376 2.7e-06 56.2 162 27.8
Medtr1g492690 Medicago truncatula HOM05D002441 ORTHO05D022927 2.7e-06 56.2 146 26.0
arahy.Tifrunner.gnm1.ann1.I5QAZJ Arachis hypogaea HOM05D002441 ORTHO05D002376 3.5e-06 55.8 155 27.1
BcaB02g11010 Brassica carinata HOM05D000353 ORTHO05D000174 3.5e-06 55.8 164 26.8
ECA232G2690 Erigeron canadensis HOM05D000353 ORTHO05D000174 3.5e-06 55.8 135 28.1
Lj6g0015688 Lotus japonicus HOM05D007499 ORTHO05D000174 3.5e-06 55.8 86 29.1
Ah.02g115000 Amaranthus hybridus HOM05D000353 ORTHO05D002376 4.5e-06 55.5 48 52.1
arahy.Tifrunner.gnm1.ann1.11NDG0 Arachis hypogaea HOM05D002441 ORTHO05D002376 4.5e-06 55.5 155 27.1
arahy.Tifrunner.gnm1.ann1.2B1C55 Arachis hypogaea HOM05D010000 ORTHO05D009491 4.5e-06 55.5 114 34.2
BolC2t10352H Brassica oleracea HOM05D000353 ORTHO05D000174 4.5e-06 55.5 164 28.7
BraA09t40707Z Brassica rapa HOM05D000353 ORTHO05D000174 4.5e-06 55.5 164 28.7
Peaxi162Scf00832g00024 Petunia axillaris HOM05D002441 ORTHO05D002376 4.5e-06 55.5 176 23.9
arahy.Tifrunner.gnm1.ann1.40UDPE Arachis hypogaea HOM05D002441 ORTHO05D002376 5.9e-06 55.1 155 27.1
arahy.Tifrunner.gnm1.ann1.AFNT1S Arachis hypogaea HOM05D002441 ORTHO05D002376 5.9e-06 55.1 155 27.1
arahy.Tifrunner.gnm1.ann1.FKF8NN Arachis hypogaea HOM05D002441 ORTHO05D002376 5.9e-06 55.1 155 27.1
arahy.Tifrunner.gnm1.ann1.G1FX5D Arachis hypogaea HOM05D002441 ORTHO05D002376 5.9e-06 55.1 155 27.1
arahy.Tifrunner.gnm1.ann1.HTKL5C Arachis hypogaea HOM05D002441 ORTHO05D002376 5.9e-06 55.1 155 27.1
arahy.Tifrunner.gnm1.ann1.IQTA4G Arachis hypogaea HOM05D002441 ORTHO05D002376 5.9e-06 55.1 155 27.1
arahy.Tifrunner.gnm1.ann1.PWRV1I Arachis hypogaea HOM05D002441 ORTHO05D002376 5.9e-06 55.1 155 27.1
arahy.Tifrunner.gnm1.ann1.Y0MAT2 Arachis hypogaea HOM05D002441 ORTHO05D002376 5.9e-06 55.1 145 23.4
Medtr4g032565 Medicago truncatula HOM05D002441 ORTHO05D002376 5.9e-06 55.1 112 29.5
TPR.G5052 Trifolium pratense HOM05D000096 ORTHO05D000045 5.9e-06 55.1 157 29.9
arahy.Tifrunner.gnm1.ann1.U0JAJ0 Arachis hypogaea HOM05D002441 ORTHO05D002376 7.7e-06 54.7 101 32.7
Ca_20369_v3 Cicer arietinum L. HOM05D048157 ORTHO05D044361 7.7e-06 54.7 163 31.3
Thhalv10000424m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 7.7e-06 54.7 170 24.7
Lj1g0019213 Lotus japonicus HOM05D007499 ORTHO05D010522 7.7e-06 54.7 126 29.4
Lj5g0011370 Lotus japonicus HOM05D007499 ORTHO05D010522 7.7e-06 54.7 114 33.3
Lj6g0021814 Lotus japonicus HOM05D007499 ORTHO05D010522 7.7e-06 54.7 113 28.3
LjContig00564g0005268 Lotus japonicus HOM05D007499 ORTHO05D010522 7.7e-06 54.7 114 33.3
LjContig00571g0009576 Lotus japonicus HOM05D020600 ORTHO05D010522 7.7e-06 54.7 126 29.4
TPR.G9555 Trifolium pratense HOM05D000096 ORTHO05D000045 7.7e-06 54.7 144 31.2


User provided reference genes

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