Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.6e-255 885.6 452 100.0
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 2.9e-244 848.2 452 95.1
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 2.7e-234 815.1 453 90.3
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 4.4e-232 807.7 453 89.4
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 3.0e-217 758.4 452 83.0
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 2.8e-215 751.9 452 81.2
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 3.7e-215 751.5 480 80.6
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 8.3e-215 750.4 452 83.4
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.1e-214 750.0 480 80.6
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 5.9e-213 744.2 453 81.7
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 9.8e-208 726.9 454 79.7
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 8.6e-204 713.8 453 78.1
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 1.3e-188 663.3 447 75.2
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 3.3e-187 658.7 454 72.9
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 4.3e-187 658.3 449 73.3
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 4.7e-186 654.8 465 71.2
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 8.1e-186 654.1 450 72.4
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 5.2e-185 651.4 448 73.4
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 6.8e-185 651.0 447 74.7
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 8.9e-185 650.6 448 73.2
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.0e-184 649.4 449 72.2
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.6e-184 649.0 446 73.1
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 9.9e-184 647.1 447 71.4
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 2.2e-183 646.0 446 72.9
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 2.4e-182 642.5 454 72.7
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 1.6e-181 639.8 448 72.8
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.7e-181 639.0 448 72.5
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 2.7e-181 639.0 448 71.2
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.0e-180 637.1 447 72.7
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 3.0e-180 635.6 454 70.9
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.0e-180 635.6 449 71.5
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 5.1e-180 634.8 452 70.1
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 5.1e-180 634.8 447 71.8
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 6.6e-180 634.4 450 69.8
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 6.6e-180 634.4 444 72.3
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 1.9e-179 632.9 450 71.6
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.8e-178 629.0 457 70.9
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 3.1e-177 625.5 444 70.0
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 3.1e-177 625.5 439 69.9
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 4.0e-177 625.2 458 70.3
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 5.2e-177 624.8 464 67.7
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 8.9e-177 624.0 452 67.3
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 9.9e-176 620.5 448 69.0
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 4.9e-175 618.2 450 69.3
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.4e-174 616.7 450 69.8
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.9e-174 616.3 451 70.1
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.9e-174 616.3 449 70.2
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 2.4e-174 615.9 448 69.4
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 2.4e-174 615.9 450 70.0
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 3.2e-174 615.5 456 66.7
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 3.2e-174 615.5 456 66.7
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 4.1e-174 615.1 450 69.6
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 6.0e-173 611.3 395 76.2
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 7.8e-173 610.9 448 70.1
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.0e-172 610.5 404 75.7
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.3e-172 610.1 451 68.7
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-172 609.8 448 70.1
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 2.3e-172 609.4 448 70.1
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 3.0e-172 609.0 451 69.0
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.0e-172 609.0 447 69.8
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.9e-172 608.6 449 68.8
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 5.1e-172 608.2 448 69.9
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 6.6e-172 607.8 451 69.8
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 6.6e-172 607.8 451 68.5
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 6.6e-172 607.8 417 73.1
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 8.7e-172 607.4 447 69.8
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 8.7e-172 607.4 451 68.5
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 8.7e-172 607.4 451 68.5
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 8.7e-172 607.4 465 66.2
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.9e-171 606.3 448 69.2
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 2.5e-171 605.9 452 67.9
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 4.3e-171 605.1 449 69.7
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 1.6e-170 603.2 448 69.2
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.6e-170 603.2 451 68.5
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 3.6e-170 602.1 450 67.3
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 4.7e-170 601.7 452 67.0
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 6.2e-170 601.3 448 68.3
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 6.2e-170 601.3 439 67.9
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 8.1e-170 600.9 439 67.7
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.1e-169 600.5 489 64.4
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.1e-169 599.0 445 68.8
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.1e-169 599.0 447 68.7
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 4.0e-169 598.6 468 66.7
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 4.0e-169 598.6 440 65.9
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 6.9e-169 597.8 453 67.3
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 9.0e-169 597.4 449 67.9
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 9.0e-169 597.4 451 67.4
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 4.4e-168 595.1 447 67.3
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 4.4e-168 595.1 447 67.3
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 4.4e-168 595.1 446 67.9
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 5.8e-168 594.7 472 64.6
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 2.2e-167 592.8 454 67.2
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 4.9e-167 591.7 440 63.9
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 7.1e-166 587.8 476 64.5
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.7e-164 583.2 418 71.8
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 3.9e-164 582.0 547 55.4
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.3e-162 577.0 451 65.9
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 3.1e-161 572.4 465 63.9
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 5.3e-161 571.6 470 64.5
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.4e-159 564.7 439 65.1
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.6e-157 560.1 403 72.2
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 3.5e-157 558.9 401 67.1
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 4.6e-157 558.5 441 63.3
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.0e-156 555.8 440 64.8
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 5.1e-156 555.1 457 62.1
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.0e-152 543.1 441 63.0
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 8.4e-151 537.7 389 67.9
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 9.3e-150 534.3 464 59.9
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 6.2e-146 521.5 481 57.6
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 8.2e-146 521.2 443 59.1
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 2.5e-142 509.6 441 59.2
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.9e-139 500.0 403 63.3
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 2.6e-136 489.6 450 56.2
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.2e-135 486.5 394 62.2
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 2.2e-135 486.5 446 56.1
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 2.9e-135 486.1 446 54.7
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.6e-133 479.2 348 70.7
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 1.8e-129 466.8 448 54.2
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 4.7e-125 452.2 460 55.0
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 6.7e-124 448.4 439 52.6
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 3.3e-123 446.0 285 76.5
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 9.7e-123 444.5 454 50.0
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 4.1e-121 439.1 443 57.8
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 2.6e-120 436.4 426 52.3
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.4e-118 430.6 455 48.1
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 9.4e-118 427.9 455 47.7
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 4.7e-117 425.6 389 56.0
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 6.1e-117 425.2 448 48.2
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.3e-114 417.5 317 70.0
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.2e-101 374.4 449 45.9
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.2e-96 357.8 261 69.7
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 5.9e-96 355.5 290 64.8
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.3e-95 354.4 250 69.2
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.5e-91 340.9 394 48.7
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.0e-79 300.1 454 38.5
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 5.1e-71 272.7 186 71.5
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.8e-69 266.9 311 51.1
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 6.4e-66 255.8 451 38.4
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.9e-58 229.6 158 72.2
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 6.2e-53 212.6 128 76.6
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 1.8e-52 211.1 173 64.7
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 8.4e-50 202.2 140 72.1
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.6e-47 192.6 151 62.3
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.4e-43 180.3 194 50.5
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.7e-42 177.9 121 72.7
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.0e-31 142.1 132 59.1
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.8e-29 134.0 94 69.1
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.8e-27 126.3 118 59.3
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.4e-25 121.7 112 58.0
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 3.0e-23 114.0 72 70.8
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.8e-20 104.8 61 86.9
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.4e-17 95.1 99 48.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 1.6e-16 91.7 72 62.5
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 3.3e-14 84.0 63 65.1
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 8.2e-13 79.3 44 81.8
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 2.2e-10 71.2 79 54.4
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.9e-09 68.2 43 74.4
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 3.3e-06 57.4 37 75.7


User provided reference genes

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