Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 6.9e-35 150.2 82 100.0
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 6.6e-30 133.7 79 89.9
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 8.1e-28 126.7 81 82.7
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 4.0e-27 124.4 82 81.7
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 6.9e-27 123.6 79 83.5
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 4.5e-26 120.9 82 79.3
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 5.8e-26 120.6 80 80.0
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 2.9e-25 118.2 81 77.8
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 4.9e-25 117.5 83 79.5
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.9e-24 115.5 77 83.1
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 7.4e-21 103.6 77 70.1
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 2.1e-20 102.1 79 70.9
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 6.2e-20 100.5 70 75.7
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 6.9e-19 97.1 75 69.3
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.6e-18 95.1 75 68.0
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 2.6e-18 95.1 70 68.6
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 3.4e-18 94.7 70 78.6
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 4.5e-18 94.4 64 79.7
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.5e-18 94.4 70 78.6
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.7e-17 92.4 75 66.7
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.2e-17 92.0 75 66.7
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.2e-17 92.0 80 66.2
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.2e-17 92.0 69 71.0
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.9e-17 91.7 70 71.4
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.9e-17 91.7 78 66.7
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 3.8e-17 91.3 79 65.8
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 6.5e-17 90.5 69 69.6
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.1e-16 89.7 82 62.2
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.1e-16 89.7 82 62.2
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 1.1e-16 89.7 69 69.6
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 1.1e-16 89.7 82 63.4
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.1e-16 89.7 82 65.9
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 1.4e-16 89.4 77 66.2
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.9e-16 89.0 79 67.1
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.5e-16 88.6 72 66.7
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 3.2e-16 88.2 82 62.2
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 5.5e-16 87.4 78 65.4
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 5.5e-16 87.4 70 71.4
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 5.5e-16 87.4 82 62.2
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 9.3e-16 86.7 79 65.8
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 1.2e-15 86.3 84 61.9
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.6e-15 85.9 79 64.6
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.1e-15 85.5 81 63.0
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.7e-15 85.1 85 63.5
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 3.5e-15 84.7 78 65.4
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 3.5e-15 84.7 67 68.7
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 3.5e-15 84.7 78 66.7
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 3.5e-15 84.7 78 65.4
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 4.6e-15 84.3 81 61.7
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 4.6e-15 84.3 70 70.0
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 4.6e-15 84.3 70 70.0
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 6.0e-15 84.0 83 65.1
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 6.0e-15 84.0 71 66.2
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 7.9e-15 83.6 80 57.5
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 1.0e-14 83.2 80 60.0
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 1.3e-14 82.8 68 67.6
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 1.8e-14 82.4 80 62.5
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.8e-14 82.4 72 69.4
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.3e-14 82.0 81 60.5
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 2.3e-14 82.0 69 68.1
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 2.3e-14 82.0 84 64.3
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 3.0e-14 81.6 75 61.3
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 5.1e-14 80.9 78 60.3
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 6.7e-14 80.5 66 68.2
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 6.7e-14 80.5 71 64.8
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.7e-14 80.5 77 62.3
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 8.7e-14 80.1 86 58.1
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 8.7e-14 80.1 86 58.1
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 8.7e-14 80.1 86 58.1
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 8.7e-14 80.1 72 59.7
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 8.7e-14 80.1 75 61.3
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 1.1e-13 79.7 86 58.1
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 1.1e-13 79.7 86 58.1
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.1e-13 79.7 82 59.8
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.1e-13 79.7 73 63.0
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.5e-13 79.3 69 63.8
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.5e-13 79.3 75 61.3
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.5e-13 78.6 66 66.7
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 4.3e-13 77.8 80 56.2
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 4.3e-13 77.8 72 61.1
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 5.7e-13 77.4 65 63.1
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 5.7e-13 77.4 64 65.6
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 7.4e-13 77.0 70 61.4
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 9.6e-13 76.6 72 61.1
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.3e-12 76.3 62 71.0
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.3e-12 76.3 76 60.5
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.3e-12 76.3 70 60.0
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.6e-12 75.9 63 68.3
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 2.1e-12 75.5 90 53.3
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 2.1e-12 75.5 90 53.3
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.1e-12 75.5 65 64.6
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 2.1e-12 75.5 63 69.8
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 2.1e-12 75.5 63 66.7
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 2.1e-12 75.5 63 66.7
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 2.8e-12 75.1 84 56.0
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 2.8e-12 75.1 63 68.3
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 2.8e-12 75.1 70 64.3
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.7e-12 74.7 73 58.9
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 3.7e-12 74.7 66 63.6
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 4.8e-12 74.3 69 62.3
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 4.8e-12 74.3 70 64.3
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 6.2e-12 73.9 72 58.3
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 6.2e-12 73.9 71 57.7
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 8.2e-12 73.6 71 60.6
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 8.2e-12 73.6 75 64.0
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.1e-11 73.2 77 58.4
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 1.1e-11 73.2 64 60.9
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.4e-11 72.8 72 56.9
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 1.4e-11 72.8 69 59.4
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.8e-11 72.4 75 58.7
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.8e-11 72.4 72 55.6
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.8e-11 72.4 90 56.7
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.1e-11 71.6 70 60.0
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 3.1e-11 71.6 78 55.1
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 5.3e-11 70.9 77 55.8
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 6.9e-11 70.5 61 65.6
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 9.0e-11 70.1 73 61.6
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 9.0e-11 70.1 60 66.7
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 1.2e-10 69.7 72 59.7
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.5e-10 69.3 59 69.5
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.5e-10 69.3 85 55.3
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 2.0e-10 68.9 77 58.4
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.0e-10 68.9 85 55.3
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.0e-10 68.9 76 56.6
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 2.0e-10 68.9 65 58.5
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.6e-10 68.6 69 65.2
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.4e-10 68.2 79 55.7
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.4e-10 68.2 64 59.4
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 3.4e-10 68.2 61 65.6
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 3.4e-10 68.2 72 59.7
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 4.5e-10 67.8 62 64.5
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 4.5e-10 67.8 62 64.5
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 5.8e-10 67.4 67 59.7
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 5.8e-10 67.4 62 64.5
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.0e-09 66.6 80 53.8
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.0e-09 66.6 82 52.4
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.3e-09 66.2 70 57.1
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.7e-09 65.9 77 55.8
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.9e-09 65.1 65 56.9
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 3.8e-09 64.7 72 58.3
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 3.8e-09 64.7 73 53.4
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 5.0e-09 64.3 61 60.7
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 6.5e-09 63.9 71 56.3
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 1.9e-08 62.4 76 53.9
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.9e-08 62.4 84 48.8
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.5e-08 62.0 79 51.9
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 4.2e-08 61.2 63 55.6
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 1.6e-07 59.3 49 67.3
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 2.7e-07 58.5 50 66.0
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 2.7e-07 58.5 66 48.5
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 6.1e-07 57.4 79 50.6
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 7.9e-07 57.0 72 48.6
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 1.0e-06 56.6 81 48.1
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 3.9e-06 54.7 75 48.0


User provided reference genes

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