Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 1.3e-190 669.5 327 100.0
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 1.3e-190 669.5 327 100.0
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 4.9e-185 651.0 327 96.3
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 1.7e-177 625.9 327 92.7
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 3.8e-177 624.8 327 92.7
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 1.9e-176 622.5 327 91.7
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 1.6e-172 609.4 327 89.9
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 1.4e-171 606.3 327 89.3
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 1.4e-171 606.3 327 89.0
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 1.8e-171 605.9 327 88.1
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 1.8e-171 605.9 327 88.4
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 2.0e-170 602.4 327 88.4
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 5.9e-170 600.9 327 88.4
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.0e-169 600.1 327 88.1
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 1.0e-169 600.1 327 88.4
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 3.8e-169 598.2 327 88.1
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 1.4e-168 596.3 327 87.2
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 1.4e-168 596.3 327 88.1
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 1.4e-168 596.3 327 85.9
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 1.9e-168 595.9 327 86.5
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 2.5e-168 595.5 325 87.7
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 3.2e-168 595.1 327 86.9
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 5.5e-168 594.3 327 86.9
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 5.5e-168 594.3 327 86.9
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 9.4e-168 593.6 327 86.9
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 1.2e-167 593.2 326 86.2
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 1.6e-167 592.8 327 86.5
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 2.1e-167 592.4 327 86.2
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 6.1e-167 590.9 327 86.2
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 7.9e-167 590.5 327 85.9
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 1.0e-166 590.1 327 85.9
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 3.9e-166 588.2 327 85.6
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 5.1e-166 587.8 327 86.2
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 5.1e-166 587.8 327 85.9
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 6.7e-166 587.4 327 85.3
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 6.7e-166 587.4 327 86.2
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 1.1e-165 586.6 327 85.9
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.1e-165 586.6 327 85.6
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 1.5e-165 586.3 343 82.2
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 4.3e-165 584.7 327 85.6
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 5.7e-165 584.3 327 85.0
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 7.4e-165 583.9 327 85.3
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 1.7e-164 582.8 327 84.1
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 2.2e-164 582.4 327 85.0
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 4.8e-164 581.3 327 84.7
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 8.2e-164 580.5 327 85.0
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 1.1e-163 580.1 327 84.4
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 2.4e-163 578.9 327 84.1
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 2.4e-163 578.9 327 84.7
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 3.1e-163 578.6 327 84.1
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 6.9e-163 577.4 327 84.1
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 9.1e-163 577.0 327 82.9
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 9.1e-163 577.0 327 83.5
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 9.1e-163 577.0 327 83.8
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 9.1e-163 577.0 327 84.4
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 1.5e-162 576.2 327 82.9
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 1.5e-162 576.2 327 83.8
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 1.5e-162 576.2 327 82.9
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 2.0e-162 575.9 327 83.8
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 2.6e-162 575.5 327 83.5
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 3.4e-162 575.1 327 83.5
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 3.4e-162 575.1 327 83.2
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 3.4e-162 575.1 327 83.2
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 4.5e-162 574.7 327 83.5
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 5.9e-162 574.3 327 83.2
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 5.9e-162 574.3 327 82.9
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 7.7e-162 573.9 327 83.5
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 7.7e-162 573.9 327 82.6
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 1.0e-161 573.5 319 85.6
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 1.3e-161 573.2 327 82.0
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 1.7e-161 572.8 327 82.6
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 1.7e-161 572.8 327 82.9
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 2.2e-161 572.4 328 83.5
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 2.9e-161 572.0 327 82.6
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 3.8e-161 571.6 327 83.2
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 6.5e-161 570.9 327 83.2
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 6.5e-161 570.9 381 75.6
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 1.1e-160 570.1 327 82.6
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 1.4e-160 569.7 327 82.6
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 2.5e-160 568.9 327 83.2
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 5.5e-160 567.8 327 81.7
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 7.2e-160 567.4 327 82.9
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 1.2e-159 566.6 335 81.8
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 2.3e-158 562.4 327 81.3
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 1.5e-157 559.7 327 79.8
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 2.6e-157 558.9 327 81.3
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 1.3e-156 556.6 327 81.7
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 3.7e-156 555.1 327 80.1
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 4.8e-156 554.7 327 80.1
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 1.1e-155 553.5 327 79.5
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 1.8e-155 552.7 327 79.8
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 4.5e-154 548.1 327 78.3
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 1.0e-153 547.0 327 78.0
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 1.3e-153 546.6 327 79.2
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 6.5e-153 544.3 327 77.4
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 2.3e-150 535.8 327 77.4
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 2.4e-147 525.8 304 82.9
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 2.4e-147 525.8 304 82.9
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 2.0e-138 496.1 327 72.2
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 1.0e-137 493.8 327 70.0
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 5.0e-137 491.5 327 70.9
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 3.6e-135 485.3 327 71.9
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 4.7e-135 485.0 327 73.4
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 1.8e-134 483.0 327 69.1
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 4.4e-133 478.4 322 74.5
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 1.4e-131 473.4 327 73.1
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 9.8e-125 450.7 326 69.6
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 8.0e-119 431.0 326 62.0
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 4.4e-117 425.2 327 65.7
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 6.6e-113 411.4 376 56.4
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 3.7e-108 395.6 214 86.9
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 6.4e-108 394.8 328 57.0
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 1.4e-107 393.7 214 86.9
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 4.6e-106 388.7 215 85.6
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 2.1e-103 379.8 214 82.7
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 3.6e-103 379.0 213 83.6
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 3.7e-100 369.0 327 56.9
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 2.7e-98 362.8 366 51.4
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 8.1e-71 271.6 287 47.7
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 1.0e-65 254.6 190 67.9
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 1.1e-64 251.1 156 77.6
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 3.0e-57 226.5 157 69.4
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 9.7e-48 194.9 147 66.7
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 3.1e-46 189.9 131 71.0
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 1.8e-14 84.3 59 71.2
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 2.0e-13 80.9 90 48.9
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 2.0e-13 80.9 90 48.9
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 4.0e-09 66.6 35 82.9


User provided reference genes

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