Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 6.9e-159 563.9 286 100.0
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 3.5e-94 349.0 306 67.0
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 1.7e-93 346.7 293 69.6
VMungo1080G0080 Vigna mungo HOM05D004925 ORTHO05D005643 2.0e-73 280.0 163 88.3
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 4.2e-63 245.7 297 55.9
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 5.5e-63 245.4 342 50.0
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 1.1e-55 221.1 299 51.2
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 1.4e-55 220.7 242 57.0
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 1.2e-54 217.6 315 49.8
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 1.3e-51 207.6 318 47.8
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 1.0e-45 188.0 286 48.6
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 5.1e-45 185.7 245 50.2
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 8.2e-43 178.3 177 58.2
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 3.4e-41 172.9 309 42.1
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.0e-40 171.4 289 44.3
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 1.0e-40 171.4 282 44.3
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 1.0e-40 171.4 282 44.3
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 1.0e-40 171.4 332 43.1
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 1.7e-40 170.6 308 42.2
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 2.9e-40 169.9 306 41.8
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 6.5e-40 168.7 253 47.0
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 6.5e-40 168.7 318 44.0
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 7.2e-39 165.2 305 40.7
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.2e-38 164.5 291 42.3
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.7e-38 163.3 160 58.1
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 3.6e-38 162.9 325 41.2
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.7e-38 162.5 291 40.9
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 7.9e-38 161.8 315 40.0
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 1.4e-37 161.0 335 39.1
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 2.3e-37 160.2 219 47.9
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.0e-37 159.8 291 41.2
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 6.7e-37 158.7 250 45.2
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 8.8e-37 158.3 300 40.7
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 1.1e-36 157.9 336 38.4
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 1.5e-36 157.5 299 41.1
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 3.3e-36 156.4 260 43.5
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 7.4e-36 155.2 303 40.6
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 9.7e-36 154.8 361 36.6
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 1.3e-35 154.5 326 37.1
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.7e-35 154.1 305 39.0
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 2.2e-35 153.7 326 37.1
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 4.8e-35 152.5 158 58.9
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 6.3e-35 152.1 297 38.7
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.1e-34 151.4 276 40.9
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 1.8e-34 150.6 204 46.6
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 1.8e-34 150.6 309 42.1
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 5.3e-34 149.1 274 40.1
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 1.2e-33 147.9 304 39.5
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 2.6e-33 146.7 316 40.5
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 4.5e-33 146.0 248 44.0
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 4.5e-33 146.0 196 47.4
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 5.9e-33 145.6 286 38.5
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 1.0e-32 144.8 301 39.2
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 2.9e-32 143.3 162 52.5
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 3.8e-32 142.9 165 53.9
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 5.0e-32 142.5 196 48.5
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 5.0e-32 142.5 162 52.5
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 8.5e-32 141.7 307 37.1
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.1e-31 141.4 192 47.9
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.9e-31 140.6 340 35.0
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.9e-31 140.6 266 41.4
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.9e-31 140.6 287 38.0
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 3.2e-31 139.8 305 39.7
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 4.2e-31 139.4 311 38.6
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 5.5e-31 139.0 278 39.9
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 5.5e-31 139.0 309 37.9
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 5.5e-31 139.0 248 43.1
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 7.2e-31 138.7 310 37.7
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 1.6e-30 137.5 166 52.4
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 3.6e-30 136.3 349 35.5
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 6.1e-30 135.6 283 39.6
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 1.4e-29 134.4 272 40.4
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 1.8e-29 134.0 288 38.5
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 1.8e-29 134.0 159 49.1
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 3.0e-29 133.3 337 34.7
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 5.2e-29 132.5 313 36.7
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 5.2e-29 132.5 290 37.6
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 5.2e-29 132.5 287 36.2
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 1.2e-28 131.3 183 44.3
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 1.5e-28 131.0 299 37.5
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 1.5e-28 131.0 253 36.8
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 3.3e-28 129.8 278 38.1
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 3.3e-28 129.8 141 49.6
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 4.4e-28 129.4 306 36.9
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 1.3e-27 127.9 283 38.2
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 1.3e-27 127.9 284 37.3
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 2.8e-27 126.7 167 46.7
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.8e-27 126.7 251 39.0
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 3.7e-27 126.3 298 37.2
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 3.7e-27 126.3 297 37.7
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 4.8e-27 125.9 307 36.2
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 8.2e-27 125.2 273 37.7
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.1e-26 124.8 289 38.4
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.4e-26 124.4 309 34.6
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 2.4e-26 123.6 305 35.7
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 2.4e-26 123.6 149 47.0
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 4.1e-26 122.9 152 49.3
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 5.3e-26 122.5 281 37.4
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 2.0e-25 120.6 142 52.1
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 2.7e-25 120.2 169 46.7
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 5.9e-25 119.0 287 36.2
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 7.7e-25 118.6 280 37.9
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 8.5e-24 115.2 167 43.7
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 8.5e-24 115.2 183 41.5
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 1.5e-23 114.4 299 36.5
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 1.9e-23 114.0 320 33.8
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 4.2e-23 112.8 284 35.2
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 9.4e-23 111.7 175 42.9
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 4.7e-22 109.4 284 32.4
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 2.3e-21 107.1 210 39.5
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 7.5e-20 102.1 224 36.2
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.7e-19 100.9 259 34.4
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 4.8e-19 99.4 127 47.2
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 6.3e-19 99.0 281 32.7
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 8.3e-19 98.6 282 31.6
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.1e-18 98.2 284 32.0
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 9.1e-18 95.1 178 37.6
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 1.0e-16 91.7 274 32.1
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 2.2e-16 90.5 251 35.5
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 2.9e-16 90.1 289 31.8
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 8.5e-16 88.6 201 33.3
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 5.5e-15 85.9 247 31.6
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 7.2e-15 85.5 277 29.6
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 8.0e-14 82.0 167 37.7
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 3.0e-13 80.1 283 31.1
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 4.0e-13 79.7 282 33.0
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 2.6e-12 77.0 91 50.5
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 9.8e-12 75.1 87 49.4
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 1.3e-11 74.7 64 57.8
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 2.8e-11 73.6 109 43.1
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 2.8e-11 73.6 167 32.9
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 2.8e-11 73.6 144 34.7
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 4.9e-11 72.8 90 45.6
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 4.9e-11 72.8 279 29.7
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 8.3e-11 72.0 80 48.8
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 1.1e-10 71.6 94 46.8
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 2.4e-10 70.5 85 47.1
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 5.4e-10 69.3 228 32.0
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 2.0e-09 67.4 97 46.4
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 1.7e-08 64.3 56 57.1


User provided reference genes

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