Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 2.9e-54 214.9 105 100.0
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 1.2e-36 156.4 105 76.2
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 6.1e-36 154.1 105 74.3
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 1.8e-35 152.5 105 73.3
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 6.7e-35 150.6 105 72.4
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 1.7e-33 146.0 105 68.6
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 4.8e-33 144.4 105 65.7
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 2.4e-32 142.1 91 75.8
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 3.1e-32 141.7 105 66.7
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 7.0e-32 140.6 89 73.0
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 1.6e-31 139.4 90 72.2
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 7.7e-31 137.1 76 80.3
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 7.7e-31 137.1 95 68.4
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 7.7e-31 137.1 94 71.3
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 1.0e-30 136.7 98 65.3
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 1.7e-30 136.0 105 64.8
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 1.7e-30 136.0 91 68.1
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 1.7e-30 136.0 95 68.4
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 2.2e-30 135.6 94 70.2
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 2.9e-30 135.2 97 66.0
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 2.9e-30 135.2 99 66.7
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 2.9e-30 135.2 99 66.7
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 3.8e-30 134.8 95 69.5
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 3.8e-30 134.8 76 77.6
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 5.0e-30 134.4 92 69.6
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 6.5e-30 134.0 95 67.4
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 8.5e-30 133.7 90 67.8
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 1.1e-29 133.3 97 64.9
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.9e-29 132.5 94 68.1
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 1.9e-29 132.5 94 68.1
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 1.9e-29 132.5 107 63.6
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 1.9e-29 132.5 100 63.0
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 2.5e-29 132.1 98 65.3
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 3.2e-29 131.7 76 75.0
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 3.2e-29 131.7 94 68.1
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 4.2e-29 131.3 79 70.9
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 5.5e-29 131.0 105 57.1
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 5.5e-29 131.0 94 67.0
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 5.5e-29 131.0 94 62.8
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 7.2e-29 130.6 90 66.7
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 7.2e-29 130.6 98 63.3
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 7.2e-29 130.6 98 60.2
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 7.2e-29 130.6 72 80.6
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 7.2e-29 130.6 97 62.9
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-28 129.8 90 66.7
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 1.2e-28 129.8 94 66.0
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 2.1e-28 129.0 98 61.2
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 2.7e-28 128.6 101 64.4
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 2.7e-28 128.6 95 63.2
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 3.6e-28 128.3 93 65.6
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 3.6e-28 128.3 99 57.6
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 3.6e-28 128.3 95 61.1
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 4.7e-28 127.9 92 63.0
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 6.1e-28 127.5 93 63.4
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 6.1e-28 127.5 91 63.7
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 6.1e-28 127.5 94 64.9
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 1.0e-27 126.7 91 60.4
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 1.4e-27 126.3 105 61.0
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 1.8e-27 125.9 105 60.0
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 1.8e-27 125.9 95 60.0
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 1.8e-27 125.9 93 63.4
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 1.8e-27 125.9 108 58.3
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 2.3e-27 125.6 94 64.9
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 2.3e-27 125.6 105 59.0
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 5.2e-27 124.4 91 60.4
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 8.8e-27 123.6 105 57.1
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 1.5e-26 122.9 75 69.3
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 2.6e-26 122.1 93 60.2
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 2.6e-26 122.1 86 66.3
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 4.4e-26 121.3 100 59.0
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 4.4e-26 121.3 94 59.6
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 7.5e-26 120.6 95 60.0
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 9.7e-26 120.2 73 72.6
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 1.3e-25 119.8 77 67.5
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 1.7e-25 119.4 77 67.5
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 1.7e-25 119.4 77 67.5
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 1.7e-25 119.4 77 67.5
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 2.8e-25 118.6 75 66.7
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 3.7e-25 118.2 75 68.0
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 3.7e-25 118.2 77 67.5
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 6.3e-25 117.5 71 70.4
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 6.3e-25 117.5 75 68.0
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 6.3e-25 117.5 75 68.0
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 6.3e-25 117.5 75 68.0
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 6.3e-25 117.5 75 68.0
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 6.3e-25 117.5 75 68.0
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 6.3e-25 117.5 71 69.0
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 1.1e-24 116.7 77 66.2
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 1.1e-24 116.7 77 66.2
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 7.0e-24 114.0 112 51.8
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 7.0e-24 114.0 71 69.0
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 7.0e-24 114.0 112 51.8
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 3.5e-23 111.7 99 53.5
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 3.5e-23 111.7 104 55.8
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 2.9e-22 108.6 71 64.8
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 8.5e-22 107.1 90 55.6
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 1.1e-21 106.7 77 67.5
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 1.5e-21 106.3 99 50.5
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 1.5e-21 106.3 57 80.7
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 2.5e-21 105.5 90 51.1
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 2.5e-21 105.5 90 51.1
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 2.5e-21 105.5 90 51.1
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 4.2e-21 104.8 91 52.7
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 4.2e-21 104.8 90 51.1
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 5.5e-21 104.4 91 52.7
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 5.5e-21 104.4 103 51.5
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 5.5e-21 104.4 103 51.5
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 9.4e-21 103.6 99 46.5
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 2.7e-20 102.1 99 45.5
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 2.7e-20 102.1 99 45.5
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 6.1e-20 100.9 99 45.5
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 8.0e-20 100.5 90 48.9
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 8.0e-20 100.5 71 63.4
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 1.4e-19 99.8 99 46.5
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 2.3e-19 99.0 94 46.8
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 3.0e-19 98.6 83 50.6
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 8.8e-19 97.1 90 45.6
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 8.3e-17 90.5 80 51.2
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 2.0e-15 85.9 100 42.0
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 2.2e-14 82.4 90 41.1
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 5.0e-06 54.7 89 36.0


User provided reference genes

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