Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 1.2e-175 619.8 317 100.0
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 1.3e-126 456.8 321 78.8
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 1.7e-121 439.9 320 76.9
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 1.2e-103 380.6 229 83.8
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 4.0e-99 365.5 341 58.9
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 1.4e-91 340.5 312 59.9
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 1.5e-90 337.0 313 59.7
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 1.1e-88 330.9 313 60.1
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 2.6e-82 309.7 332 53.6
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 3.4e-82 309.3 307 57.3
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 1.2e-79 300.8 339 51.0
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 3.9e-78 295.8 288 59.0
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 2.0e-74 283.5 313 50.2
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 2.3e-70 270.0 317 48.6
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 3.9e-70 269.2 329 47.4
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 6.7e-70 268.5 320 49.7
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 1.9e-69 266.9 311 48.2
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 7.4e-69 265.0 314 49.7
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 3.7e-68 262.7 315 50.5
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 2.4e-67 260.0 313 50.2
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 3.1e-67 259.6 305 52.1
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 9.0e-67 258.1 306 48.4
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 5.9e-66 255.4 307 47.2
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 5.9e-66 255.4 307 47.2
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 5.9e-66 255.4 298 47.7
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 1.0e-65 254.6 313 46.6
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 1.0e-65 254.6 313 47.3
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 5.0e-65 252.3 329 43.5
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 6.5e-65 251.9 311 45.3
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 1.1e-64 251.1 315 45.7
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 5.5e-64 248.8 310 45.2
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 2.7e-63 246.5 318 45.0
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 3.0e-62 243.0 318 44.3
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 3.0e-62 243.0 318 44.3
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 6.7e-62 241.9 288 48.6
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 1.1e-61 241.1 318 44.0
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 3.3e-61 239.6 315 43.8
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 9.7e-61 238.0 317 44.8
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.3e-60 237.7 319 43.9
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 2.2e-60 236.9 309 45.0
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 1.1e-59 234.6 313 44.1
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 1.8e-59 233.8 320 42.8
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 4.1e-59 232.6 307 45.0
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 5.3e-59 232.3 325 41.5
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 9.1e-59 231.5 325 41.8
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 6.5e-57 225.3 322 41.3
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 9.4e-56 221.5 312 42.6
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 3.6e-55 219.5 324 42.9
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 8.8e-54 214.9 285 43.9
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 2.0e-53 213.8 321 42.1
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 2.0e-53 213.8 324 42.3
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 5.7e-53 212.2 324 42.9
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 7.4e-53 211.8 281 44.8
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 1.3e-52 211.1 324 41.4
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 6.3e-52 208.8 315 39.7
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 2.4e-51 206.8 314 38.9
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 6.9e-51 205.3 309 36.9
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 1.3e-49 201.1 315 40.6
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 1.3e-49 201.1 312 40.4
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 2.9e-49 199.9 297 40.7
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 3.8e-49 199.5 279 39.1
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 2.5e-48 196.8 314 38.9
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 4.2e-48 196.1 320 38.8
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 4.2e-48 196.1 308 40.6
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 4.2e-48 196.1 309 36.9
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 9.4e-48 194.9 288 41.7
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 3.6e-47 193.0 281 39.1
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 7.9e-47 191.8 309 37.9
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 7.9e-47 191.8 309 37.9
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 1.0e-46 191.4 321 42.4
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 3.0e-46 189.9 315 38.4
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 2.0e-45 187.2 314 40.4
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 2.6e-45 186.8 290 36.6
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 7.4e-45 185.3 308 37.3
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 4.8e-44 182.6 294 40.1
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 8.2e-44 181.8 305 39.7
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 1.4e-43 181.0 281 39.9
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 1.4e-43 181.0 307 38.1
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 3.1e-43 179.9 314 36.6
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 4.1e-43 179.5 283 39.6
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 7.0e-43 178.7 290 35.2
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 4.5e-42 176.0 237 43.0
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 4.5e-42 176.0 269 38.3
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 2.9e-41 173.3 325 36.0
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 6.5e-41 172.2 315 38.4
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 2.7e-39 166.8 310 36.5
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 3.6e-39 166.4 322 34.8
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 4.7e-39 166.0 318 33.6
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 2.3e-38 163.7 310 34.2
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 1.2e-37 161.4 299 36.1
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 7.5e-37 158.7 287 35.2
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 2.8e-36 156.8 313 36.1
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 8.2e-36 155.2 301 35.9
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 1.1e-35 154.8 318 35.5
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 3.1e-35 153.3 320 34.7
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 3.2e-32 143.3 307 34.5
Medtr3g034540 Medicago truncatula HOM05D007109 ORTHO05D008813 2.1e-31 140.6 124 59.7
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 1.2e-29 134.8 297 32.0
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 1.7e-28 131.0 309 31.7
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 1.7e-28 131.0 336 29.5
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 4.5e-26 122.9 309 31.4
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 7.2e-24 115.5 113 55.8
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 1.2e-23 114.8 95 64.2
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 6.1e-23 112.5 141 43.3
TPR.G40619 Trifolium pratense HOM05D007109 ORTHO05D008813 2.4e-19 100.5 99 56.6
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 7.8e-18 95.5 122 43.4
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 7.8e-18 95.5 122 43.4
TPR.G21941 Trifolium pratense HOM05D007109 ORTHO05D008813 1.7e-17 94.4 94 56.4
CsaV3_3G031910 Cucumis sativus L. HOM05D007109 ORTHO05D008813 8.9e-14 82.0 126 38.1
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 9.8e-13 78.6 248 28.6
MBI19_g41373_MAGBIO Magnolia biondii HOM05D002440 ORTHO05D002576 1.0e-09 68.6 338 23.1
Glyma.09G255800 Glycine max HOM05D002440 ORTHO05D002576 3.9e-09 66.6 331 25.4
VMungo1383G0515 Vigna mungo HOM05D002440 ORTHO05D002576 5.0e-09 66.2 331 25.4
RcHm_v2.0_Chr4g0446391 Rosa chinensis HOM05D002440 ORTHO05D002576 8.6e-09 65.5 288 24.0
PSO478G1852 Papaver somniferum HOM05D002440 ORTHO05D002576 1.1e-08 65.1 322 25.2
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 3.3e-08 63.5 300 24.0
Lj3g0009121 Lotus japonicus HOM05D002440 ORTHO05D002576 3.3e-08 63.5 306 24.8
Psat3g108800 Pisum sativum HOM05D002440 ORTHO05D002576 3.3e-08 63.5 326 24.2
Ca_23593_v3 Cicer arietinum L. HOM05D002440 ORTHO05D002576 4.3e-08 63.2 307 24.4
Psat4g156680 Pisum sativum HOM05D002440 ORTHO05D002576 4.3e-08 63.2 307 24.1
TPR.G19397 Trifolium pratense HOM05D002440 ORTHO05D002576 4.3e-08 63.2 307 24.4
ATR0782G062 Amborella trichopoda HOM05D002440 ORTHO05D008813 5.6e-08 62.8 119 31.9
BolC5t28837H Brassica oleracea HOM05D002440 ORTHO05D002576 7.3e-08 62.4 315 22.9
CsaV3_3G008740 Cucumis sativus L. HOM05D002440 ORTHO05D002576 7.3e-08 62.4 328 22.0
PSO782G0131 Papaver somniferum HOM05D002440 ORTHO05D002576 7.3e-08 62.4 323 24.8
Lalb_Chr10g0096721 Lupinus albus HOM05D002440 ORTHO05D002576 9.5e-08 62.0 332 23.2
Phvul.008G059500 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 9.5e-08 62.0 314 24.2
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 1.2e-07 61.6 329 21.9
MELO3C006091.2 Cucumis melo HOM05D002440 ORTHO05D002576 1.6e-07 61.2 328 22.0
Lj1g0008716 Lotus japonicus HOM05D002440 ORTHO05D002576 1.6e-07 61.2 326 23.9
arahy.Tifrunner.gnm1.ann1.1NF82D Arachis hypogaea HOM05D002440 ORTHO05D002576 2.1e-07 60.8 300 25.3
MD00G1111800 Malus domestica HOM05D002440 ORTHO05D002576 2.1e-07 60.8 282 23.0
Dinv43850 Davidia involucrata HOM05D002440 ORTHO05D002576 3.6e-07 60.1 285 25.6
Nn1g01638 Nelumbo nucifera HOM05D002440 ORTHO05D002576 3.6e-07 60.1 312 23.1
PGR031G3124 Punica granatum HOM05D002440 ORTHO05D002576 4.7e-07 59.7 310 23.2
CiPaw.08G144600 Carya illinoinensis HOM05D007109 ORTHO05D008813 6.2e-07 59.3 81 43.2
Glyma.18G237000 Glycine max HOM05D002440 ORTHO05D002576 8.0e-07 58.9 330 24.5
MD01G1069200 Malus domestica HOM05D002440 ORTHO05D002576 8.0e-07 58.9 282 22.3
TAR629G1939 Trochodendron aralioides HOM05D002440 ORTHO05D002576 8.0e-07 58.9 315 24.4
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 1.1e-06 58.5 302 23.2
ClCG06G003470 Citrullus lanatus HOM05D002440 ORTHO05D002576 1.1e-06 58.5 315 23.8
AL1G10850 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 1.4e-06 58.2 295 22.0
Cc00_g17880 Coffea canephora HOM05D002440 ORTHO05D002576 1.4e-06 58.2 278 21.9
Medtr7g078700 Medicago truncatula HOM05D002440 ORTHO05D002576 1.4e-06 58.2 326 22.7
CiPaw.02G033700 Carya illinoinensis HOM05D002440 ORTHO05D002576 2.3e-06 57.4 311 25.4
Carub.0001s0069 Capsella rubella HOM05D002440 ORTHO05D002576 3.1e-06 57.0 295 22.0
CsaV3_6G000840 Cucumis sativus L. HOM05D002440 ORTHO05D002576 3.1e-06 57.0 300 24.0
MELO3C021186.2 Cucumis melo HOM05D002440 ORTHO05D002576 4.0e-06 56.6 300 24.0
Manes.05G031100 Manihot esculenta HOM05D002440 ORTHO05D002576 4.0e-06 56.6 330 23.3
arahy.Tifrunner.gnm1.ann1.ZTTB8N Arachis hypogaea HOM05D002440 ORTHO05D002576 5.2e-06 56.2 330 23.3
Peaxi162Scf00020g00113 Petunia axillaris HOM05D002440 ORTHO05D002576 5.2e-06 56.2 302 22.2
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 6.8e-06 55.8 101 32.7
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 6.8e-06 55.8 101 32.7
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 6.8e-06 55.8 101 32.7
MD13G1008300 Malus domestica HOM05D002440 ORTHO05D002576 6.8e-06 55.8 300 21.3
FvH4_7g15070 Fragaria vesca HOM05D002440 ORTHO05D002576 8.9e-06 55.5 282 20.9
FAN06G2187 Fragaria x ananassa HOM05D002440 ORTHO05D002576 8.9e-06 55.5 282 20.9
FAN06G3166 Fragaria x ananassa HOM05D002440 ORTHO05D002576 8.9e-06 55.5 282 20.9
Sabra08G0063500 Salix brachista HOM05D002440 ORTHO05D002576 8.9e-06 55.5 282 21.3
unitig_749.g14346 Utricularia gibba HOM05D002440 ORTHO05D002576 8.9e-06 55.5 303 23.8


User provided reference genes

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