Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 1.2e-46 189.5 96 100.0
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 2.5e-36 155.2 99 82.8
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 7.3e-36 153.7 99 81.8
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 2.0e-33 145.6 99 75.8
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 1.9e-31 139.0 99 74.7
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 4.1e-31 137.9 99 72.7
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 3.5e-30 134.8 100 74.0
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 1.1e-26 123.2 99 69.7
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 6.8e-26 120.6 97 63.9
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 3.2e-23 111.7 100 60.0
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 1.0e-21 106.7 99 58.6
Medtr3g020880 Medicago truncatula HOM05D007791 ORTHO05D000653 3.0e-21 105.1 96 63.5
Medtr3g020930 Medicago truncatula HOM05D007791 ORTHO05D000653 1.1e-20 103.2 70 71.4
TWI74G0823 Tripterygium wilfordii HOM05D007791 ORTHO05D000653 4.3e-20 101.3 103 56.3
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 1.4e-18 96.3 86 60.5
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 1.8e-18 95.9 103 53.4
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 1.8e-18 95.9 103 53.4
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.1e-18 95.1 101 56.4
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.1e-18 95.1 101 56.4
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.1e-18 95.1 101 55.4
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 8.9e-18 93.6 98 53.1
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 2.0e-17 92.4 103 54.4
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 2.0e-17 92.4 92 56.5
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 2.0e-17 92.4 105 54.3
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 2.6e-17 92.0 100 52.0
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 3.4e-17 91.7 100 53.0
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 4.4e-17 91.3 105 53.3
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 5.8e-17 90.9 105 53.3
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 5.8e-17 90.9 106 53.8
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 9.9e-17 90.1 92 53.3
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 9.9e-17 90.1 64 68.8
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 1.7e-16 89.4 98 51.0
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 2.2e-16 89.0 70 64.3
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.7e-16 88.2 74 62.2
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 6.4e-16 87.4 100 52.0
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 1.1e-15 86.7 96 50.0
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 1.1e-15 86.7 113 46.9
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 1.4e-15 86.3 106 48.1
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 1.9e-15 85.9 97 50.5
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 2.4e-15 85.5 84 52.4
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 2.4e-15 85.5 64 67.2
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 3.2e-15 85.1 96 56.2
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 3.2e-15 85.1 96 56.2
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 5.4e-15 84.3 96 47.9
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 9.2e-15 83.6 74 54.1
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 1.2e-14 83.2 82 52.4
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 1.6e-14 82.8 73 58.9
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 2.1e-14 82.4 64 62.5
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 2.1e-14 82.4 87 51.7
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 2.7e-14 82.0 64 59.4
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 3.5e-14 81.6 67 59.7
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 7.8e-14 80.5 107 43.9
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 1.3e-13 79.7 105 46.7
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 1.3e-13 79.7 64 59.4
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 1.3e-13 79.7 96 45.8
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 6.6e-13 77.4 96 53.1
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.1e-12 76.6 95 48.4
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 3.3e-12 75.1 96 51.0
CsaV3_4G025200 Cucumis sativus L. HOM05D007791 ORTHO05D000653 7.3e-12 73.9 96 46.9
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 7.3e-12 73.9 82 47.6
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 7.3e-12 73.9 64 53.1
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 1.2e-11 73.2 94 45.7
Aqoxy1G00874 Aquilegia oxysepala HOM05D007791 ORTHO05D000653 3.6e-11 71.6 62 59.7
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 1.5e-09 66.2 71 43.7
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 2.0e-09 65.9 62 48.4
Peaxi162Scf00325g00711 Petunia axillaris HOM05D001004 ORTHO05D000653 3.4e-09 65.1 64 51.6
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 3.4e-09 65.1 101 38.6
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 3.4e-09 65.1 65 49.2
CBR_g37573 Chara braunii HOM05D007791 ORTHO05D000653 4.4e-09 64.7 64 53.1
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 4.4e-09 64.7 64 51.6
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 5.8e-09 64.3 65 49.2
Lj5g0010722 Lotus japonicus HOM05D001004 ORTHO05D000653 7.6e-09 63.9 64 50.0
Os08g0441200 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 7.6e-09 63.9 64 46.9
Os08g0441300 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 7.6e-09 63.9 64 46.9
Zm00001eb208560 Zea mays HOM05D014452 ORTHO05D000653 9.9e-09 63.5 66 42.4
Manes.05G086329 Manihot esculenta HOM05D001004 ORTHO05D000653 2.2e-08 62.4 69 46.4
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.2e-08 62.4 64 53.1
Psat2g130960 Pisum sativum HOM05D001004 ORTHO05D000653 2.2e-08 62.4 64 50.0
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 2.2e-08 62.4 72 48.6
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 2.9e-08 62.0 64 51.6
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 2.9e-08 62.0 64 48.4
vmacro08656 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 2.9e-08 62.0 64 48.4
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 3.8e-08 61.6 70 48.6
Manes.05G086480 Manihot esculenta HOM05D001004 ORTHO05D000653 6.4e-08 60.8 69 44.9
RcHm_v2.0_Chr4g0390831 Rosa chinensis HOM05D001004 ORTHO05D000653 6.4e-08 60.8 64 48.4
Zm00001eb355990 Zea mays HOM05D007791 ORTHO05D000653 6.4e-08 60.8 70 45.7
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 8.4e-08 60.5 64 51.6
Sed0018468 Sechium edule HOM05D001004 ORTHO05D000653 1.1e-07 60.1 64 48.4
TPR.G24475 Trifolium pratense HOM05D003787 ORTHO05D000653 1.1e-07 60.1 64 48.4
Lj5g0009601 Lotus japonicus HOM05D001004 ORTHO05D000653 1.4e-07 59.7 64 48.4
Medtr5g045470 Medicago truncatula HOM05D001004 ORTHO05D000653 1.4e-07 59.7 64 50.0
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 1.9e-07 59.3 64 50.0
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 1.9e-07 59.3 64 48.4
Oeu002604.1 Olea europaea HOM05D001004 ORTHO05D000653 1.9e-07 59.3 64 46.9
FvH4_4g02940 Fragaria vesca HOM05D001004 ORTHO05D000653 2.4e-07 58.9 74 43.2
FAN17G1223 Fragaria x ananassa HOM05D001004 ORTHO05D000653 2.4e-07 58.9 74 43.2
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 2.4e-07 58.9 64 48.4
SMO351G0292 Selaginella moellendorffii HOM05D007791 ORTHO05D000653 2.4e-07 58.9 65 49.2
THA.LOC104824172 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 2.4e-07 58.9 64 48.4
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 2.4e-07 58.9 72 44.4
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 3.2e-07 58.5 64 46.9
Hma1.2p1_0310F.1_g120950 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 3.2e-07 58.5 64 46.9
RcHm_v2.0_Chr4g0390841 Rosa chinensis HOM05D001004 ORTHO05D000653 4.2e-07 58.2 64 46.9
SalBow6G5036 Salvia bowleyana HOM05D001004 ORTHO05D000653 4.2e-07 58.2 64 46.9
vmacro08637 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 4.2e-07 58.2 62 46.8
HPP92_019238 Vanilla planifolia HOM05D007791 ORTHO05D000653 5.4e-07 57.8 62 48.4
Glyma.20G205900 Glycine max HOM05D001004 ORTHO05D000653 7.1e-07 57.4 64 51.6
Os01g0615050 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 7.1e-07 57.4 64 48.4
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 7.1e-07 57.4 66 40.9
RhsimUnG0178600 Rhododendron simsii HOM05D007791 ORTHO05D000653 7.1e-07 57.4 56 58.9
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 9.3e-07 57.0 64 48.4
Hma1.2p1_0310F.1_g120940 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 1.2e-06 56.6 64 43.8
RhsimUnG0178500 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.2e-06 56.6 65 50.8
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 1.2e-06 56.6 64 48.4
Thecc.10G077900 Theobroma cacao HOM05D001004 ORTHO05D000653 1.2e-06 56.6 64 48.4
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 1.2e-06 56.6 64 48.4
CANSAT78G0302 Cannabis sativa HOM05D001004 ORTHO05D000653 1.6e-06 56.2 71 46.5
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.6e-06 56.2 66 47.0
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.6e-06 56.2 68 44.1
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.6e-06 56.2 66 47.0
RcHm_v2.0_Chr4g0391001 Rosa chinensis HOM05D001004 ORTHO05D000653 1.6e-06 56.2 70 42.9
CiPaw.04G183700 Carya illinoinensis HOM05D001004 ORTHO05D000653 2.1e-06 55.8 66 47.0
Ciclev10007070m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.1e-06 55.8 64 45.3
Ciclev10007123m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.1e-06 55.8 64 46.9
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.1e-06 55.8 68 44.1
QL06p015871 Quercus lobata HOM05D001004 ORTHO05D000653 2.1e-06 55.8 63 47.6
Sed0010846 Sechium edule HOM05D001004 ORTHO05D000653 2.1e-06 55.8 65 50.8
Thecc.10G077700 Theobroma cacao HOM05D001004 ORTHO05D000653 2.1e-06 55.8 64 46.9
Zm00001eb267030 Zea mays HOM05D007791 ORTHO05D000653 2.1e-06 55.8 74 41.9
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 2.7e-06 55.5 73 42.5
Dinv44642 Davidia involucrata HOM05D001004 ORTHO05D000653 2.7e-06 55.5 64 46.9
MD13G1208800 Malus domestica HOM05D001004 ORTHO05D000653 2.7e-06 55.5 64 45.3
Sed0001135 Sechium edule HOM05D001004 ORTHO05D000653 2.7e-06 55.5 68 47.1
AUR62032224 Chenopodium quinoa HOM05D001004 ORTHO05D000653 3.5e-06 55.1 64 46.9
Nitab4.5_0000302g0080 Nicotiana tabacum HOM05D001004 ORTHO05D000653 3.5e-06 55.1 64 45.3
Thecc.10G078100 Theobroma cacao HOM05D001004 ORTHO05D000653 3.5e-06 55.1 64 46.9
AL4G36170 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 4.6e-06 54.7 66 45.5
Carub.0004s2093 Capsella rubella HOM05D001004 ORTHO05D000653 4.6e-06 54.7 64 43.8
CAN.G324.21 Capsicum annuum HOM05D007791 ORTHO05D028502 4.6e-06 54.7 77 44.2
CiPaw.01G189600 Carya illinoinensis HOM05D001004 ORTHO05D000653 4.6e-06 54.7 64 46.9
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 4.6e-06 54.7 64 45.3
MELO3C034586.2 Cucumis melo HOM05D001004 ORTHO05D000653 4.6e-06 54.7 64 40.6
FvH4_4g02840 Fragaria vesca HOM05D001004 ORTHO05D000653 4.6e-06 54.7 62 41.9
FAN12G0040 Fragaria x ananassa HOM05D001004 ORTHO05D000653 4.6e-06 54.7 62 41.9
HanXRQChr13g0424431 Helianthus annuus HOM05D001004 ORTHO05D000653 4.6e-06 54.7 64 45.3
Prupe.1G032500 Prunus persica HOM05D001004 ORTHO05D000653 4.6e-06 54.7 64 46.9
Prupe.I000300 Prunus persica HOM05D001004 ORTHO05D000653 4.6e-06 54.7 64 45.3
AT2G38900 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 6.0e-06 54.3 64 43.8
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 6.0e-06 54.3 64 45.3
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 6.0e-06 54.3 70 44.3
HanXRQChr01g0014511 Helianthus annuus HOM05D001004 ORTHO05D000653 6.0e-06 54.3 64 46.9
AT2G38870 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 7.8e-06 53.9 66 43.9
COL.COLO4_12153 Corchorus olitorius HOM05D001004 ORTHO05D000653 7.8e-06 53.9 65 49.2
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 7.8e-06 53.9 65 46.2
Migut.C00659 Erythranthe guttata HOM05D001004 ORTHO05D000653 7.8e-06 53.9 64 43.8
HanXRQChr13g0424391 Helianthus annuus HOM05D001004 ORTHO05D000653 7.8e-06 53.9 64 45.3
MBI04_g22607_MAGBIO Magnolia biondii HOM05D001004 ORTHO05D000653 7.8e-06 53.9 64 48.4
MD16G1210400 Malus domestica HOM05D001004 ORTHO05D000653 7.8e-06 53.9 64 45.3
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 7.8e-06 53.9 64 40.6
Os11g0279750 Oryza sativa ssp. japonica HOM05D001004 ORTHO05D000653 7.8e-06 53.9 64 43.8
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 7.8e-06 53.9 64 46.9


User provided reference genes

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