Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 1.3e-28 129.0 65 100.0
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 1.2e-18 95.9 67 73.1
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 1.5e-13 79.0 62 66.1
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 2.6e-13 78.2 60 66.7
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 7.6e-13 76.6 62 62.9
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 7.6e-13 76.6 62 61.3
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 7.6e-13 76.6 62 61.3
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 7.6e-13 76.6 62 61.3
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 5.0e-12 73.9 61 57.4
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 1.1e-11 72.8 62 62.9
arahy.Tifrunner.gnm1.ann1.FG2V1D Arachis hypogaea HOM05D007881 ORTHO05D009922 5.5e-11 70.5 54 68.5
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 7.2e-11 70.1 45 77.8
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 7.2e-11 70.1 45 77.8
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 1.2e-10 69.3 66 59.1
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 1.2e-10 69.3 62 53.2
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 1.6e-10 68.9 51 70.6
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 1.6e-10 68.9 67 53.7
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 2.7e-10 68.2 49 63.3
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 2.7e-10 68.2 57 57.9
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 2.7e-10 68.2 65 56.9
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 3.5e-10 67.8 59 55.9
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 4.6e-10 67.4 57 54.4
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 1.0e-09 66.2 60 61.7
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 1.0e-09 66.2 59 54.2
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 1.3e-09 65.9 60 56.7
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 1.3e-09 65.9 52 57.7
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 1.8e-09 65.5 51 56.9
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 2.3e-09 65.1 51 62.7
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 3.0e-09 64.7 68 52.9
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 3.0e-09 64.7 44 65.9
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 3.0e-09 64.7 44 65.9
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 3.0e-09 64.7 59 55.9
AUR62000305 Chenopodium quinoa HOM05D007881 ORTHO05D009922 3.0e-09 64.7 58 55.2
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 3.9e-09 64.3 63 55.6
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 3.9e-09 64.3 66 54.5
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 3.9e-09 64.3 59 59.3
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 5.1e-09 63.9 67 49.3
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 5.1e-09 63.9 57 56.1
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 5.1e-09 63.9 59 52.5
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 6.7e-09 63.5 72 48.6
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 8.7e-09 63.2 62 58.1
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 8.7e-09 63.2 51 54.9
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 8.7e-09 63.2 61 47.5
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 8.7e-09 63.2 54 59.3
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 1.1e-08 62.8 57 57.9
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 1.5e-08 62.4 58 56.9
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 1.9e-08 62.0 62 51.6
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 1.9e-08 62.0 56 57.1
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 1.9e-08 62.0 56 58.9
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 1.9e-08 62.0 44 65.9
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 2.5e-08 61.6 46 60.9
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 2.5e-08 61.6 62 51.6
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 2.5e-08 61.6 43 65.1
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 2.5e-08 61.6 56 57.1
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 3.3e-08 61.2 64 53.1
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 3.3e-08 61.2 38 71.1
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 3.3e-08 61.2 40 67.5
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 3.3e-08 61.2 65 49.2
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 4.3e-08 60.8 68 51.5
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 4.3e-08 60.8 41 68.3
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 4.3e-08 60.8 63 52.4
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 4.3e-08 60.8 61 49.2
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 7.4e-08 60.1 68 51.5
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 7.4e-08 60.1 36 72.2
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 7.4e-08 60.1 37 73.0
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 7.4e-08 60.1 37 73.0
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 1.3e-07 59.3 52 53.8
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 1.3e-07 59.3 56 55.4
AUR62006650 Chenopodium quinoa HOM05D007881 ORTHO05D009922 2.2e-07 58.5 58 51.7
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 2.8e-07 58.2 38 65.8
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 2.8e-07 58.2 60 53.3
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 3.7e-07 57.8 45 62.2
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 4.8e-07 57.4 37 67.6
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 8.2e-07 56.6 40 65.0
EL10Ac4g09960 Beta vulgaris HOM05D007881 ORTHO05D009922 1.1e-06 56.2 60 46.7
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 1.4e-06 55.8 55 52.7
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 1.8e-06 55.5 58 51.7
arahy.Tifrunner.gnm1.ann1.4W1HTH Arachis hypogaea HOM05D007881 ORTHO05D009922 5.3e-06 53.9 45 68.9
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 5.3e-06 53.9 56 50.0
HanXRQChr16g0510911 Helianthus annuus HOM05D007881 ORTHO05D009922 5.3e-06 53.9 53 50.9
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 9.0e-06 53.1 43 58.1
MBI17_g00966_MAGBIO Magnolia biondii HOM05D007881 ORTHO05D009922 9.0e-06 53.1 45 55.6


User provided reference genes

Program Settings