Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 5.2e-185 651.0 343 100.0
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 5.6e-139 498.0 343 75.2
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 2.5e-123 446.0 311 81.0
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.2e-117 427.2 342 67.0
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.3e-116 423.7 336 67.9
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 5.1e-116 421.8 334 67.4
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 5.1e-116 421.8 333 67.3
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 1.5e-115 420.2 346 66.8
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 2.0e-112 409.8 332 64.8
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.3e-111 407.1 332 65.4
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 1.6e-109 400.2 332 65.1
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.6e-101 372.5 346 59.8
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 4.3e-99 365.5 307 64.2
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 6.3e-98 361.7 333 59.5
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 8.5e-95 351.3 333 55.9
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.4e-94 350.5 323 59.4
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.9e-94 350.1 330 55.5
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.9e-94 350.1 334 58.4
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 2.5e-94 349.7 334 57.8
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 3.2e-94 349.4 330 55.5
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.6e-93 347.1 334 55.7
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.7e-93 346.3 329 54.7
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 4.7e-93 345.5 336 57.4
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 6.1e-93 345.1 339 55.5
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 7.9e-93 344.7 331 55.6
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.4e-92 344.0 329 54.4
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 3.9e-92 342.4 334 55.7
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 3.9e-92 342.4 327 56.9
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 8.8e-92 341.3 329 55.0
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 5.7e-91 338.6 327 56.6
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 1.3e-90 337.4 337 55.2
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.3e-90 337.4 331 54.7
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 1.3e-90 337.4 336 55.1
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 2.2e-90 336.7 327 56.6
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 1.4e-89 334.0 337 55.5
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.8e-89 333.6 331 55.3
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.8e-89 333.6 331 57.1
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 1.8e-89 333.6 334 53.6
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 2.4e-89 333.2 331 53.8
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 2.4e-89 333.2 330 56.1
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 3.1e-89 332.8 331 55.0
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 5.3e-89 332.0 315 55.6
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 9.1e-89 331.3 326 58.6
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.2e-88 330.9 334 56.3
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.5e-88 330.5 331 54.7
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.0e-87 327.8 342 55.8
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.0e-87 327.8 337 54.6
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 3.8e-87 325.9 290 60.7
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 5.0e-87 325.5 331 53.5
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 5.0e-87 325.5 307 58.6
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.4e-86 323.9 327 52.9
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 1.4e-86 323.9 331 55.3
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.2e-86 322.8 334 56.0
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 4.2e-86 322.4 342 54.1
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 4.2e-86 322.4 349 52.4
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 5.5e-86 322.0 236 64.4
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.6e-85 320.5 328 54.9
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 4.7e-85 318.9 329 52.9
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 8.0e-85 318.2 331 53.2
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 8.0e-85 318.2 245 64.1
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.4e-84 317.4 343 51.9
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 1.4e-84 317.4 336 54.5
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.8e-84 317.0 331 56.8
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.3e-84 316.6 334 53.0
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 3.0e-84 316.2 343 52.2
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 5.2e-84 315.5 326 52.1
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 6.7e-84 315.1 334 52.4
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 6.7e-84 315.1 344 51.2
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 1.1e-83 314.3 337 53.4
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.1e-83 314.3 326 53.7
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 2.0e-83 313.5 330 53.0
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 2.0e-83 313.5 349 50.7
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 4.4e-83 312.4 356 52.2
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.3e-82 310.8 326 54.0
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 2.2e-82 310.1 308 58.1
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 2.8e-82 309.7 326 52.8
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 1.4e-81 307.4 334 52.1
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.0e-79 301.2 311 55.3
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 2.9e-79 299.7 337 51.3
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 2.6e-75 286.6 331 49.8
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 7.5e-75 285.0 303 53.1
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 1.3e-74 284.3 344 48.8
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.7e-74 283.9 254 60.2
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.1e-73 281.2 218 62.4
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 2.4e-73 280.0 261 54.4
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 7.0e-73 278.5 298 52.7
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.6e-72 277.3 250 57.2
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 7.7e-72 275.0 231 61.9
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.0e-71 274.6 228 62.7
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.2e-71 273.5 334 51.2
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 3.8e-71 272.7 340 49.4
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 6.5e-71 271.9 300 51.7
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.5e-70 270.8 364 45.3
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 1.5e-70 270.8 301 50.8
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.6e-69 267.3 342 49.4
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 1.6e-69 267.3 305 51.5
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.4e-68 264.2 265 49.8
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.8e-68 263.8 342 49.1
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 8.8e-68 261.5 345 49.3
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.2e-67 261.2 214 65.0
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.2e-67 261.2 214 65.0
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.7e-66 257.3 196 64.8
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.7e-66 257.3 298 52.3
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.2e-64 251.1 335 46.0
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 2.8e-61 240.0 252 55.2
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 8.0e-61 238.4 258 51.2
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.2e-59 234.6 249 52.2
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.2e-59 234.6 251 49.4
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.9e-58 229.2 219 56.2
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 1.1e-57 228.0 249 45.0
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.8e-57 227.3 242 49.2
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 9.2e-57 224.9 294 43.2
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 9.2e-57 224.9 216 56.9
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 1.5e-54 217.6 326 44.8
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.5e-54 216.9 330 43.9
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.6e-53 214.2 175 62.9
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.0e-52 211.5 282 47.9
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 8.3e-50 201.8 208 52.9
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.4e-49 199.1 246 47.6
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.2e-49 198.4 299 40.5
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 7.5e-43 178.7 237 43.9
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.7e-42 177.6 213 48.4
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 8.3e-42 175.3 140 64.3
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 8.3e-42 175.3 122 67.2
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 5.4e-41 172.6 178 51.1
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 2.1e-40 170.6 148 58.8
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.1e-38 164.9 177 50.8
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.5e-38 164.5 272 40.8
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.4e-36 157.9 248 37.1
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.4e-36 157.9 126 64.3
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.7e-34 149.8 282 34.8
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 4.3e-30 136.3 157 53.5
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 5.6e-30 136.0 141 48.2
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 6.2e-29 132.5 155 45.8
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 1.2e-24 118.2 272 30.5
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.3e-23 114.0 101 58.4
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.0e-23 113.6 163 44.8
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 1.3e-21 108.2 70 68.6
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 8.1e-21 105.5 61 77.0
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 6.4e-18 95.9 170 31.8
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.6e-13 81.3 185 30.3
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 4.8e-13 79.7 58 62.1
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.4e-12 77.4 69 55.1
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 9.0e-12 75.5 65 60.0


User provided reference genes

Program Settings