Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G025800 Phaseolus vulgaris HOM05D006338 ORTHO05D007946 4.4e-149 531.6 326 100.0
VMungo1080G1396 Vigna mungo HOM05D006338 ORTHO05D007946 5.7e-133 478.0 324 82.1
Glyma.04G135700 Glycine max HOM05D006338 ORTHO05D007946 1.6e-122 443.4 323 77.4
arahy.Tifrunner.gnm1.ann1.XVKA12 Arachis hypogaea HOM05D006338 ORTHO05D007946 3.4e-77 292.7 323 57.0
Psat4g193800 Pisum sativum HOM05D006338 ORTHO05D007946 1.1e-62 244.6 330 47.6
Lj3g0017268 Lotus japonicus HOM05D006338 ORTHO05D007946 3.4e-61 239.6 325 48.9
Ca_23967_v3 Cicer arietinum L. HOM05D006338 ORTHO05D007946 2.2e-60 236.9 335 46.3
Glyma.15G234200 Glycine max HOM05D006338 ORTHO05D007946 2.9e-60 236.5 312 48.4
Medtr8g039560 Medicago truncatula HOM05D006338 ORTHO05D007946 9.3e-59 231.5 303 46.9
VMungo1127G0668 Vigna mungo HOM05D006338 ORTHO05D007946 4.6e-58 229.2 311 46.6
Prupe.2G038900 Prunus persica HOM05D006338 ORTHO05D007946 1.3e-57 227.6 306 51.0
FvH4_7g03360 Fragaria vesca HOM05D006338 ORTHO05D007946 1.8e-57 227.3 306 49.7
FAN03G0755 Fragaria x ananassa HOM05D006338 ORTHO05D007946 5.1e-57 225.7 306 49.3
FAN10G1196 Fragaria x ananassa HOM05D006338 ORTHO05D007946 5.1e-57 225.7 306 49.3
QL04p017585 Quercus lobata HOM05D006338 ORTHO05D007946 8.7e-57 224.9 314 48.7
Lalb_Chr19g0133081 Lupinus albus HOM05D006338 ORTHO05D007946 1.9e-56 223.8 311 46.9
FAN06G4797 Fragaria x ananassa HOM05D006338 ORTHO05D007946 3.3e-56 223.0 301 49.2
MD07G1049200 Malus domestica HOM05D006338 ORTHO05D007946 3.3e-56 223.0 306 50.0
CiPaw.13G014600 Carya illinoinensis HOM05D006338 ORTHO05D007946 9.6e-56 221.5 312 48.7
Phvul.L001620 Phaseolus vulgaris HOM05D006338 ORTHO05D007946 9.6e-56 221.5 309 46.6
PGR031G0010 Punica granatum HOM05D006338 ORTHO05D007946 1.3e-55 221.1 322 47.2
AT1G08315 Arabidopsis thaliana HOM05D006338 ORTHO05D007946 1.6e-55 220.7 326 44.8
AL1G18730 Arabidopsis lyrata HOM05D006338 ORTHO05D007946 2.1e-55 220.3 320 45.3
CiPaw.14G008300 Carya illinoinensis HOM05D006338 ORTHO05D007946 2.8e-55 219.9 313 48.9
Glyma.13G195900 Glycine max HOM05D006338 ORTHO05D007946 4.8e-55 219.2 312 46.2
CARHR008200 Cardamine hirsuta HOM05D006338 ORTHO05D007946 1.8e-54 217.2 327 44.3
Cfa010924 Carpinus fangiana HOM05D006338 ORTHO05D007946 2.4e-54 216.9 307 46.6
MELO3C011394.2 Cucumis melo HOM05D006338 ORTHO05D007946 5.3e-54 215.7 313 46.0
Haze_03018 Corylus avellana HOM05D006338 ORTHO05D007946 9.0e-54 214.9 307 46.9
Haze_03025 Corylus avellana HOM05D006338 ORTHO05D007946 9.0e-54 214.9 307 46.9
Carub.0001s0767 Capsella rubella HOM05D006338 ORTHO05D007946 1.2e-53 214.5 307 45.6
C05p06440 Brassica napus HOM05D006338 ORTHO05D007946 2.0e-53 213.8 302 46.0
C05p06470 Brassica napus HOM05D006338 ORTHO05D007946 2.0e-53 213.8 302 46.0
BolC5t29405H Brassica oleracea HOM05D006338 ORTHO05D007946 2.0e-53 213.8 302 46.0
A06p05340 Brassica napus HOM05D006338 ORTHO05D007946 3.4e-53 213.0 302 46.0
BraA06t23743Z Brassica rapa HOM05D006338 ORTHO05D007946 3.4e-53 213.0 302 46.0
MD02G1283700 Malus domestica HOM05D006338 ORTHO05D007946 4.5e-53 212.6 306 47.7
BolC5t29407H Brassica oleracea HOM05D006338 ORTHO05D007946 5.8e-53 212.2 302 45.7
Dinv32021 Davidia involucrata HOM05D006338 ORTHO05D007946 1.3e-52 211.1 307 47.9
Sed0013519 Sechium edule HOM05D006338 ORTHO05D007946 1.7e-52 210.7 313 46.0
Thecc.10G151000 Theobroma cacao HOM05D006338 ORTHO05D007946 1.7e-52 210.7 313 46.3
Aa31LG1G6220 Aethionema arabicum HOM05D006338 ORTHO05D007946 2.2e-52 210.3 310 45.5
COL.COLO4_20675 Corchorus olitorius HOM05D006338 ORTHO05D007946 2.9e-52 209.9 312 46.2
Sp1g06950 Schrenkiella parvula HOM05D006338 ORTHO05D007946 2.9e-52 209.9 310 44.5
Atru.chr12.1255 Acer truncatum HOM05D006338 ORTHO05D007946 3.8e-52 209.5 318 45.3
ClCG08G010670 Citrullus lanatus HOM05D006338 ORTHO05D007946 3.8e-52 209.5 313 46.3
Dinv44690 Davidia involucrata HOM05D006338 ORTHO05D007946 3.8e-52 209.5 307 48.2
Eucgr.G03226 Eucalyptus grandis HOM05D006338 ORTHO05D007946 6.5e-52 208.8 308 47.4
Hma1.2p1_0837F.1_g226010 Hydrangea macrophylla HOM05D006338 ORTHO05D007946 1.1e-51 208.0 307 48.5
Hma1.2p1_1202F.1_g266875 Hydrangea macrophylla HOM05D006338 ORTHO05D007946 1.1e-51 208.0 307 48.5
Ciclev10021235m.g Citrus clementina HOM05D006338 ORTHO05D007946 1.4e-51 207.6 305 46.6
Manes.11G006100 Manihot esculenta HOM05D006338 ORTHO05D007946 1.9e-51 207.2 300 48.0
Sabra03G0145800 Salix brachista HOM05D006338 ORTHO05D007946 3.2e-51 206.5 313 46.6
TWI38G1861 Tripterygium wilfordii HOM05D006338 ORTHO05D007946 3.2e-51 206.5 307 46.6
GSVIVG01036669001 Vitis vinifera HOM05D006338 ORTHO05D007946 5.5e-51 205.7 304 48.4
Cpa.g.c43157 Carica papaya HOM05D006338 ORTHO05D007946 9.3e-51 204.9 308 46.1
Potri.003G195400 Populus trichocarpa HOM05D006338 ORTHO05D007946 1.2e-50 204.5 305 47.9
Actinidia06233 Actinidia chinensis HOM05D006338 ORTHO05D007946 2.7e-50 203.4 312 47.4
Duzib114G0257 Durio zibethinus HOM05D006338 ORTHO05D007946 2.7e-50 203.4 314 45.2
Thhalv10010031m.g Eutrema salsugineum HOM05D006338 ORTHO05D007946 3.5e-50 203.0 325 43.1
Gorai.011G216000 Gossypium raimondii HOM05D006338 ORTHO05D007946 3.5e-50 203.0 313 45.4
Gohir.D10G193200 Gossypium hirsutum HOM05D006338 ORTHO05D007946 4.6e-50 202.6 313 45.4
CsaV3_6G035860 Cucumis sativus L. HOM05D006338 ORTHO05D007946 1.3e-49 201.1 313 44.4
CSS0026304 Camellia sinensis var. sinensis HOM05D006338 ORTHO05D007946 1.8e-49 200.7 305 48.9
TWI63G1844 Tripterygium wilfordii HOM05D006338 ORTHO05D007946 3.0e-49 199.9 307 45.3
CSS0012434 Camellia sinensis var. sinensis HOM05D006338 ORTHO05D007946 3.9e-49 199.5 305 48.5
Rhsim07G0067600 Rhododendron simsii HOM05D006338 ORTHO05D007946 3.9e-49 199.5 305 47.2
Duzib128G1584 Durio zibethinus HOM05D006338 ORTHO05D007946 5.1e-49 199.1 303 46.5
Nn7g36735 Nelumbo nucifera HOM05D006338 ORTHO05D007946 1.1e-48 198.0 307 45.9
Sabra01G0020600 Salix brachista HOM05D006338 ORTHO05D007946 1.1e-48 198.0 305 46.6
Sc10g0004450 Simmondsia chinensis HOM05D006338 ORTHO05D007946 1.5e-48 197.6 307 45.3
Potri.001G028300 Populus trichocarpa HOM05D006338 ORTHO05D007946 2.5e-48 196.8 305 46.6
Actinidia10154 Actinidia chinensis HOM05D006338 ORTHO05D007946 3.3e-48 196.4 312 45.8
Gorai.009G298000 Gossypium raimondii HOM05D006338 ORTHO05D007946 4.3e-48 196.1 312 44.2
Lsat_1_v5_gn_7_31600 Lactuca sativa HOM05D006338 ORTHO05D007946 9.7e-48 194.9 316 44.9
MSTRG.20508 Avicennia marina HOM05D006338 ORTHO05D007946 1.6e-47 194.1 298 47.0
TAR633G1700 Trochodendron aralioides HOM05D006338 ORTHO05D007946 1.6e-47 194.1 306 48.0
DCAR_003626 Daucus carota HOM05D006338 ORTHO05D007946 2.2e-47 193.7 295 46.8
CSS0033972 Camellia sinensis var. sinensis HOM05D006338 ORTHO05D007946 2.8e-47 193.4 303 45.9
THA.LOC104809822 Tarenaya hassleriana HOM05D006338 ORTHO05D007946 2.8e-47 193.4 302 44.0
Gohir.A05G282300 Gossypium hirsutum HOM05D006338 ORTHO05D007946 4.8e-47 192.6 312 43.3
Gohir.D05G283500 Gossypium hirsutum HOM05D006338 ORTHO05D007946 4.8e-47 192.6 312 43.9
Lalb_Chr03g0032071 Lupinus albus HOM05D006338 ORTHO05D007946 1.8e-46 190.7 313 43.5
Migut.B01237 Erythranthe guttata HOM05D006338 ORTHO05D007946 1.2e-45 188.0 298 46.6
HanXRQChr04g0112891 Helianthus annuus HOM05D006338 ORTHO05D007946 1.5e-45 187.6 300 44.7
TAR636G1296 Trochodendron aralioides HOM05D006338 ORTHO05D007946 4.5e-45 186.0 307 44.6
PSO384G1336 Papaver somniferum HOM05D006338 ORTHO05D007946 7.6e-45 185.3 317 39.7
vmacro13757 Vaccinium macrocarpon HOM05D006338 ORTHO05D007946 7.6e-45 185.3 306 44.8
Lj8A90T48 Lonicera japonica HOM05D006338 ORTHO05D007946 6.5e-44 182.2 302 44.0
SGA_v2.0_scaffold124G33609 Striga asiatica HOM05D006338 ORTHO05D007946 1.4e-43 181.0 296 44.9
MBI13_g38612_MAGBIO Magnolia biondii HOM05D006338 ORTHO05D007946 2.5e-43 180.3 328 41.5
PGSC0003DMG400040483 Solanum tuberosum HOM05D006338 ORTHO05D007946 2.5e-43 180.3 300 43.7
Aqoxy1G00369 Aquilegia oxysepala HOM05D006338 ORTHO05D007946 3.2e-43 179.9 302 43.0
Nitab4.5_0003481g0060 Nicotiana tabacum HOM05D006338 ORTHO05D007946 5.5e-43 179.1 300 44.0
PSO339G3787 Papaver somniferum HOM05D006338 ORTHO05D007946 9.4e-43 178.3 317 46.1
SalBow5G1402 Salvia bowleyana HOM05D006338 ORTHO05D007946 9.4e-43 178.3 298 44.3
CAN.G1045.21 Capsicum annuum HOM05D006338 ORTHO05D007946 4.6e-42 176.0 300 42.3
Sopen01g040190 Solanum pennellii HOM05D006338 ORTHO05D007946 4.6e-42 176.0 300 43.0
Solyc01g096460.2 Solanum lycopersicum HOM05D006338 ORTHO05D007946 6.1e-42 175.6 300 42.7
Nitab4.5_0005808g0050 Nicotiana tabacum HOM05D006338 ORTHO05D007946 7.9e-42 175.3 300 42.7
Ah.12g062770 Amaranthus hybridus HOM05D006338 ORTHO05D007946 3.9e-41 172.9 310 43.5
AUR62026882 Chenopodium quinoa HOM05D006338 ORTHO05D007946 5.1e-41 172.6 310 41.0
Cc02_g29680 Coffea canephora HOM05D006338 ORTHO05D007946 4.3e-40 169.5 312 41.7
ECA248G3412 Erigeron canadensis HOM05D006338 ORTHO05D007946 9.7e-40 168.3 273 45.1
Ca_05571_v3 Cicer arietinum L. HOM05D006338 ORTHO05D007946 7.2e-35 152.1 303 37.3
unitig_8.g3782 Utricularia gibba HOM05D006338 ORTHO05D007946 2.6e-32 143.7 302 39.1
ATR0745G013 Amborella trichopoda HOM05D006338 ORTHO05D007946 3.3e-32 143.3 303 38.6
BcaB07g34077 Brassica carinata HOM05D006338 ORTHO05D007946 8.2e-31 138.7 222 41.9
Os01g0956075 Oryza sativa ssp. japonica HOM05D006338 ORTHO05D007946 8.2e-31 138.7 339 36.9
Gohir.A10G186200 Gossypium hirsutum HOM05D006338 ORTHO05D007946 3.8e-28 129.8 230 40.9
Peaxi162Scf00082g00013 Petunia axillaris HOM05D006338 ORTHO05D007946 9.7e-24 115.2 189 42.3
RcHm_v2.0_Chr1g0325681 Rosa chinensis HOM05D006338 ORTHO05D007946 3.7e-23 113.2 137 52.6
Zm00001eb140580 Zea mays HOM05D006338 ORTHO05D007946 1.1e-19 101.7 313 33.5
HPP92_006729 Vanilla planifolia HOM05D006338 ORTHO05D007946 6.7e-17 92.4 214 37.9
SEGI_33417 Sequoiadendron giganteum HOM05D006338 ORTHO05D007946 5.7e-16 89.4 269 32.7
QL04p017594 Quercus lobata HOM05D006338 ORTHO05D007946 2.8e-15 87.0 104 51.0
Lsat_1_v5_gn_2_123761 Lactuca sativa HOM05D000215 ORTHO05D008904 1.1e-11 75.1 299 27.4
unitig_749.g14336 Utricularia gibba HOM05D006338 ORTHO05D007946 3.2e-11 73.6 130 42.3
EL10Ac2g04870 Beta vulgaris HOM05D000215 ORTHO05D008904 4.8e-07 59.7 258 27.1
AagrBONN_evm.TU.Sc2ySwM_228.2258 Anthoceros agrestis HOM05D000215 ORTHO05D007946 1.4e-06 58.2 295 25.4
MD01G1156100 Malus domestica HOM05D000215 ORTHO05D008904 5.4e-06 56.2 131 33.6
Eucgr.J00184 Eucalyptus grandis HOM05D000215 ORTHO05D008904 7.0e-06 55.8 130 30.0
CiPaw.02G194500 Carya illinoinensis HOM05D000215 ORTHO05D008904 9.1e-06 55.5 132 31.8
FvH4_7g24820 Fragaria vesca HOM05D000215 ORTHO05D008904 9.1e-06 55.5 130 31.5
Hma1.2p1_0523F.1_g172090 Hydrangea macrophylla HOM05D000215 ORTHO05D008904 9.1e-06 55.5 130 31.5


User provided reference genes

Program Settings