Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 8.2e-123 443.7 224 100.0
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 2.5e-39 166.4 250 42.8
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 7.4e-39 164.9 234 44.0
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 9.0e-37 157.9 250 41.6
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 2.2e-35 153.3 242 41.3
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 2.9e-35 152.9 242 40.5
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 3.8e-35 152.5 242 38.8
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.1e-34 151.0 237 37.6
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.4e-34 150.6 232 38.8
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 1.2e-33 147.5 239 39.7
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 2.1e-33 146.7 234 40.6
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 7.9e-33 144.8 235 40.9
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 1.0e-32 144.4 222 41.4
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 3.0e-32 142.9 233 39.1
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 6.7e-32 141.7 223 39.5
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 1.5e-31 140.6 232 40.5
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 1.9e-31 140.2 222 39.6
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 2.5e-31 139.8 222 40.5
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 4.3e-31 139.0 235 40.9
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 5.6e-31 138.7 234 40.6
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 9.6e-31 137.9 233 39.1
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 2.8e-30 136.3 230 38.7
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 1.1e-29 134.4 226 39.8
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 1.1e-29 134.4 228 39.5
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 1.4e-29 134.0 232 37.1
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 1.8e-29 133.7 228 40.8
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 1.8e-29 133.7 230 39.1
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 2.4e-29 133.3 233 38.6
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 2.4e-29 133.3 228 39.5
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 3.1e-29 132.9 233 38.6
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 4.0e-29 132.5 232 41.4
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 5.3e-29 132.1 228 39.5
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 5.3e-29 132.1 229 37.6
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 6.9e-29 131.7 230 36.1
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 6.9e-29 131.7 233 38.2
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 6.9e-29 131.7 233 39.5
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 1.5e-28 130.6 236 40.3
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 5.8e-28 128.6 227 36.1
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 5.8e-28 128.6 233 37.8
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 1.0e-27 127.9 230 38.7
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 1.3e-27 127.5 224 37.1
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 2.2e-27 126.7 227 37.9
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 2.2e-27 126.7 230 37.8
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 2.9e-27 126.3 231 34.6
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 4.9e-27 125.6 230 37.0
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 1.1e-26 124.4 218 39.0
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 1.1e-26 124.4 238 35.3
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 1.4e-26 124.0 231 39.0
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 4.2e-26 122.5 226 38.1
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 4.2e-26 122.5 220 36.8
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 9.3e-26 121.3 236 36.0
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 1.6e-25 120.6 221 38.5
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 2.1e-25 120.2 223 37.2
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 3.5e-25 119.4 222 37.8
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 3.5e-25 119.4 224 36.2
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 7.9e-25 118.2 235 36.6
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 7.9e-25 118.2 222 37.4
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 1.0e-24 117.9 233 35.6
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.8e-24 117.1 230 37.4
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 2.3e-24 116.7 222 35.1
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 2.3e-24 116.7 231 31.6
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 2.3e-24 116.7 228 36.0
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 3.0e-24 116.3 230 36.5
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 3.9e-24 115.9 231 37.2
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 5.1e-24 115.5 217 35.5
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 8.7e-24 114.8 221 34.8
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 8.7e-24 114.8 215 36.3
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 8.7e-24 114.8 224 36.6
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 1.5e-23 114.0 229 35.8
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.9e-23 113.6 223 35.4
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 3.3e-23 112.8 215 35.8
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 5.7e-23 112.1 226 35.0
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 9.6e-23 111.3 215 37.2
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 1.3e-22 110.9 213 34.3
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 1.3e-22 110.9 214 35.0
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 1.6e-22 110.5 221 33.9
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 1.6e-22 110.5 225 35.1
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 1.6e-22 110.5 213 35.2
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 1.6e-22 110.5 219 36.5
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 2.1e-22 110.2 220 33.6
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 4.8e-22 109.0 219 33.3
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 6.3e-22 108.6 214 36.4
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 4.1e-21 105.9 223 32.7
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 4.1e-21 105.9 221 33.5
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 5.3e-21 105.5 251 32.7
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 5.3e-21 105.5 187 36.9
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 5.3e-21 105.5 187 36.9
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 5.3e-21 105.5 216 34.3
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 9.0e-21 104.8 239 31.0
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 9.0e-21 104.8 222 32.4
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 1.5e-20 104.0 219 35.2
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 2.6e-20 103.2 219 33.8
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 3.4e-20 102.8 216 31.9
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 3.4e-20 102.8 219 32.0
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 3.4e-20 102.8 219 32.0
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 5.9e-20 102.1 216 33.3
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 5.9e-20 102.1 224 33.0
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 1.0e-19 101.3 219 32.0
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 1.0e-19 101.3 219 32.0
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 1.3e-19 100.9 206 33.5
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 8.5e-19 98.2 227 29.1
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 1.1e-18 97.8 252 28.6
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 1.4e-18 97.4 220 32.3
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 3.2e-18 96.3 273 30.8
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 4.2e-18 95.9 225 31.6
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 6.1e-17 92.0 169 34.9
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 7.9e-17 91.7 219 28.8
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 7.9e-17 91.7 207 33.3
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 1.8e-16 90.5 123 37.4
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 1.8e-16 90.5 120 39.2
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 8.7e-16 88.2 198 33.3
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 2.5e-15 86.7 267 29.6
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 4.3e-15 85.9 208 30.3
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 5.7e-15 85.5 145 35.9
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 9.7e-15 84.7 208 28.8
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 2.2e-14 83.6 121 39.7
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 3.7e-14 82.8 210 32.4
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.4e-13 80.1 105 47.6
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 2.4e-13 80.1 164 32.3
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 2.0e-12 77.0 113 32.7
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 2.6e-12 76.6 130 33.1
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 3.2e-10 69.7 128 33.6
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 7.9e-09 65.1 213 27.2
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 1.4e-08 64.3 99 34.3
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 3.0e-08 63.2 94 40.4
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 8.8e-08 61.6 99 33.3
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 2.2e-06 57.0 51 52.9
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 3.7e-06 56.2 201 26.4


User provided reference genes

Program Settings