Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 0.0e+00 2531.1 1243 100.0
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 0.0e+00 2047.3 1256 82.3
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 0.0e+00 1923.7 1252 78.0
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 0.0e+00 1882.8 1267 75.6
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 0.0e+00 1757.3 1269 70.5
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 0.0e+00 1672.5 1270 67.8
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 0.0e+00 1622.4 1263 67.1
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 0.0e+00 1423.7 1263 60.7
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 0.0e+00 1214.5 1293 52.4
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 0.0e+00 1183.7 822 72.7
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 0.0e+00 1176.4 1274 51.6
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 0.0e+00 1164.1 1320 50.1
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 0.0e+00 1158.7 1279 51.0
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 0.0e+00 1152.5 1286 50.9
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1147.9 1252 51.0
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1135.6 1279 50.1
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 0.0e+00 1132.1 1272 50.9
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1131.7 1272 50.9
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1126.3 1275 50.5
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 0.0e+00 1122.1 1266 49.0
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 0.0e+00 1122.1 1335 47.5
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1120.1 1283 50.4
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1115.1 1340 47.5
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 0.0e+00 1101.7 1327 46.7
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1094.3 1224 50.2
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 0.0e+00 1091.3 1327 47.1
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 0.0e+00 1086.6 1276 48.7
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 0.0e+00 1084.7 1275 49.0
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 2.3e-307 1059.3 1278 48.8
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 3.3e-306 1055.4 1281 47.9
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 9.6e-306 1053.9 1266 46.8
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 5.3e-304 1048.1 1252 48.0
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 2.6e-303 1045.8 1260 48.0
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 7.4e-282 974.5 1300 43.7
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.2e-281 973.0 1253 44.9
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 1.4e-277 960.3 1278 44.1
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 9.4e-277 957.6 1272 44.5
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 3.6e-276 955.7 1279 44.1
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 7.9e-276 954.5 1276 43.9
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 7.4e-274 948.0 1282 44.1
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 9.7e-274 947.6 1050 50.6
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 3.7e-273 945.7 1305 43.1
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 8.2e-273 944.5 1279 45.0
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 1.4e-272 943.7 1292 42.4
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 2.2e-265 919.8 1301 42.2
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 4.8e-265 918.7 1110 47.6
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 1.4e-264 917.1 1075 48.4
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 5.3e-264 915.2 1276 42.9
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 1.7e-262 910.2 1302 42.3
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 3.8e-262 909.1 1452 39.5
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 1.2e-260 904.0 1322 41.2
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 1.7e-254 883.6 1329 41.3
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 9.4e-253 877.9 1299 41.6
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 9.1e-248 861.3 1246 41.7
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 8.0e-244 848.2 1318 39.6
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.0e-238 831.2 1309 38.7
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 3.5e-231 806.2 998 46.3
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 1.5e-226 790.8 1254 39.2
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 2.2e-225 786.9 1260 38.3
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 1.1e-224 784.6 1259 38.8
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 1.2e-223 781.2 1255 39.0
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 2.3e-222 776.9 1255 38.8
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 6.6e-222 775.4 1255 38.9
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 2.8e-220 770.0 1256 38.6
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 1.4e-219 767.7 1253 38.7
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 3.7e-217 759.6 1255 38.2
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 7.8e-215 751.9 855 47.5
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 2.5e-213 746.9 1263 37.2
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 3.1e-211 740.0 1181 38.9
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.5e-210 737.6 1281 37.5
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 4.9e-209 732.6 881 48.0
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 3.6e-204 716.5 841 47.6
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 1.8e-187 661.0 883 41.9
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 6.9e-187 659.1 939 44.1
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 3.4e-186 656.8 865 42.4
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 5.1e-182 642.9 1493 31.9
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 1.4e-179 634.8 1246 35.6
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 1.2e-178 631.7 1130 37.7
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 1.3e-172 611.7 365 82.5
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 1.4e-166 591.7 408 72.3
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 9.4e-160 568.9 1102 36.3
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 2.6e-157 560.8 366 75.4
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 1.5e-149 535.0 448 64.1
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 8.5e-145 519.2 575 49.0
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 5.0e-129 466.8 534 46.4
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 1.8e-126 458.4 902 34.1
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 4.4e-125 453.8 1133 30.3
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 8.6e-121 439.5 373 61.1
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 2.1e-119 434.9 782 34.5
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 2.8e-119 434.5 1337 27.3
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 1.1e-112 412.5 381 56.4
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 4.7e-111 407.1 475 45.1
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 7.5e-109 399.8 934 31.5
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 3.7e-108 397.5 395 50.9
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 2.0e-101 375.2 317 58.7
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 5.8e-85 320.5 418 43.1
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 3.5e-82 311.2 344 51.7
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.1e-72 279.6 302 50.3
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 1.9e-64 252.3 256 50.8
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 1.0e-60 240.0 957 25.1
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 8.4e-60 236.9 477 32.1
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 5.5e-59 234.2 330 45.2
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.5e-56 226.1 184 64.7
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.6e-55 222.6 355 39.4
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.6e-55 222.6 355 39.4
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 6.3e-55 220.7 192 59.4
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 4.2e-51 208.0 233 43.8
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 2.6e-45 188.7 179 55.3
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.0e-44 186.8 625 24.5
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 5.5e-43 181.0 186 52.7
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 1.1e-38 166.8 231 45.0
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.4e-38 166.4 237 38.4
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 2.8e-31 142.1 318 32.7
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 2.4e-30 139.0 347 30.8
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 2.2e-28 132.5 147 48.3
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 5.0e-28 131.3 183 40.4
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.4e-25 123.2 191 37.7
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 1.2e-24 120.2 194 38.7
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 2.7e-21 109.0 122 43.4
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 1.3e-20 106.7 336 30.7
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 2.7e-18 99.0 133 42.1
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 2.6e-16 92.4 91 48.4
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.8e-14 86.3 94 46.8
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 9.2e-14 84.0 96 45.8
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.6e-13 83.2 82 52.4
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.7e-12 79.7 145 37.9
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.9e-11 76.3 82 51.2
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.9e-11 76.3 82 51.2
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 1.0e-09 70.5 92 42.4
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 6.8e-09 67.8 82 47.6
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 3.7e-07 62.0 70 41.4
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 3.7e-07 62.0 96 36.5
Dinv18440 Davidia involucrata HOM05D005395 ORTHO05D006352 4.9e-07 61.6 48 62.5
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 1.1e-06 60.5 86 45.3
DCAR_024213 Daucus carota HOM05D005395 ORTHO05D006352 5.4e-06 58.2 92 39.1


User provided reference genes

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