Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.6e-29 132.1 67 100.0
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 1.3e-20 102.4 68 75.0
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 1.3e-20 102.4 68 75.0
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 2.5e-19 98.2 66 71.2
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 5.6e-19 97.1 66 69.7
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 2.1e-18 95.1 66 65.2
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 4.8e-18 94.0 67 67.2
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.4e-17 92.4 66 65.2
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 2.4e-17 91.7 63 65.1
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 2.4e-17 91.7 65 64.6
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 2.4e-17 91.7 67 65.7
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.4e-17 91.7 63 65.1
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.4e-17 91.7 63 65.1
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 3.1e-17 91.3 65 67.7
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 3.1e-17 91.3 66 62.1
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 3.1e-17 91.3 63 66.7
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 4.0e-17 90.9 63 65.1
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 5.3e-17 90.5 63 65.1
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 5.3e-17 90.5 63 61.9
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 5.3e-17 90.5 63 61.9
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.5e-16 89.0 66 63.6
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.5e-16 89.0 63 65.1
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.0e-16 88.6 63 63.5
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 2.6e-16 88.2 63 65.1
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.4e-16 87.8 66 63.6
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.4e-16 87.8 66 63.6
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 4.5e-16 87.4 66 60.6
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 4.5e-16 87.4 67 62.7
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 5.8e-16 87.0 66 60.6
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 7.6e-16 86.7 66 62.1
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 7.6e-16 86.7 67 61.2
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 7.6e-16 86.7 63 65.1
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.3e-15 85.9 66 62.1
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.7e-15 85.5 65 60.0
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.7e-15 85.5 66 60.6
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.2e-15 85.1 63 61.9
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 2.2e-15 85.1 65 63.1
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 3.8e-15 84.3 64 59.4
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 4.9e-15 84.0 66 62.1
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 6.4e-15 83.6 65 63.1
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 2.4e-14 81.6 62 61.3
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 2.4e-14 81.6 62 61.3
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 2.4e-14 81.6 62 61.3
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 3.2e-14 81.3 66 57.6
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.2e-14 81.3 65 55.4
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 4.2e-14 80.9 65 55.4
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 4.2e-14 80.9 65 55.4
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 7.1e-14 80.1 66 56.1
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 7.1e-14 80.1 60 61.7
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 7.1e-14 80.1 66 56.1
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 7.1e-14 80.1 63 58.7
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 9.3e-14 79.7 66 57.6
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 9.3e-14 79.7 66 57.6
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 1.2e-13 79.3 60 60.0
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 1.2e-13 79.3 57 63.2
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 1.2e-13 79.3 57 63.2
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 1.2e-13 79.3 62 59.7
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 1.6e-13 79.0 66 54.5
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.6e-13 79.0 66 59.1
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.6e-13 79.0 62 59.7
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 3.5e-13 77.8 57 61.4
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 4.6e-13 77.4 65 53.8
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 4.6e-13 77.4 63 52.4
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 7.9e-13 76.6 62 59.7
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 7.9e-13 76.6 66 59.1
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.0e-12 76.3 66 57.6
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.0e-12 76.3 67 56.7
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 1.3e-12 75.9 67 58.2
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.3e-12 75.9 59 61.0
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.3e-12 75.9 59 61.0
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 1.3e-12 75.9 66 56.1
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 1.8e-12 75.5 67 56.7
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.8e-12 75.5 62 58.1
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.3e-12 75.1 63 58.7
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 2.3e-12 75.1 62 59.7
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 3.0e-12 74.7 63 54.0
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 3.0e-12 74.7 67 58.2
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 3.9e-12 74.3 67 56.7
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 3.9e-12 74.3 63 54.0
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 5.1e-12 73.9 57 61.4
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 5.1e-12 73.9 63 57.1
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 5.1e-12 73.9 60 58.3
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 5.1e-12 73.9 60 58.3
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 6.7e-12 73.6 59 59.3
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.7e-12 73.6 67 53.7
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 6.7e-12 73.6 67 53.7
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.7e-12 73.6 56 62.5
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 8.7e-12 73.2 61 59.0
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 8.7e-12 73.2 67 53.7
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 1.1e-11 72.8 48 70.8
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.1e-11 72.8 67 55.2
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 1.5e-11 72.4 63 54.0
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 1.9e-11 72.0 66 56.1
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 1.9e-11 72.0 60 56.7
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 1.9e-11 72.0 60 56.7
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.9e-11 72.0 66 54.5
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.9e-11 72.0 66 54.5
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.9e-11 72.0 59 57.6
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.9e-11 72.0 67 52.2
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.9e-11 72.0 67 53.7
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.9e-11 72.0 63 54.0
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.3e-11 71.2 67 52.2
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.3e-11 71.2 67 52.2
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 3.3e-11 71.2 62 58.1
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 5.6e-11 70.5 60 55.0
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 5.6e-11 70.5 60 55.0
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 5.6e-11 70.5 60 55.0
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 5.6e-11 70.5 67 52.2
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 5.6e-11 70.5 59 57.6
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 5.6e-11 70.5 67 53.7
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 5.6e-11 70.5 59 55.9
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 7.4e-11 70.1 62 58.1
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 9.6e-11 69.7 59 57.6
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 9.6e-11 69.7 57 56.1
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 1.3e-10 69.3 60 53.3
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.3e-10 69.3 59 59.3
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 1.6e-10 68.9 62 54.8
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.8e-10 68.2 67 49.3
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 4.8e-10 67.4 59 55.9
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 6.2e-10 67.0 67 52.2
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 1.1e-09 66.2 62 54.8
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 1.1e-09 66.2 62 53.2
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.4e-09 65.9 64 48.4
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 1.4e-09 65.9 59 54.2
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.4e-09 65.1 62 51.6
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.1e-09 64.7 62 53.2
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.1e-09 64.7 62 53.2
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 4.0e-09 64.3 48 60.4
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 4.0e-09 64.3 66 51.5
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 9.0e-09 63.2 41 78.0
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 1.2e-08 62.8 62 51.6
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 1.2e-08 62.8 65 55.4
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-08 62.4 62 51.6
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-08 62.4 62 51.6
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.5e-08 62.4 48 62.5
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 3.4e-08 61.2 62 51.6
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 4.5e-08 60.8 62 50.0
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 5.8e-08 60.5 59 49.2
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 5.8e-08 60.5 59 49.2
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 7.6e-08 60.1 48 58.3
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.0e-07 59.7 57 49.1
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.3e-07 59.3 53 62.3
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 1.7e-07 58.9 62 50.0
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.9e-07 58.2 59 49.2
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 3.8e-07 57.8 62 45.2
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.9e-07 57.4 62 45.2
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 6.5e-07 57.0 59 50.8
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 1.1e-06 56.2 62 50.0
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.4e-06 55.8 56 48.2
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.9e-06 55.5 62 48.4
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.5e-06 55.1 58 44.8
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 9.3e-06 53.1 62 45.2


User provided reference genes

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