Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.5e-209 731.9 368 100.0
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 5.4e-180 634.4 389 83.3
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 3.4e-174 615.1 373 86.1
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 3.4e-166 588.6 371 82.2
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 3.3e-137 492.3 373 71.0
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.1e-132 477.2 399 66.2
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 8.7e-130 467.6 372 68.5
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 4.8e-128 461.8 380 67.6
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 6.2e-128 461.5 370 67.0
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.0e-127 458.8 373 67.8
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 6.9e-127 458.0 371 67.7
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 9.4e-116 421.0 372 63.4
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 6.3e-104 381.7 376 57.4
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.4e-103 380.6 376 57.2
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.2e-102 377.5 374 57.0
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 4.4e-97 359.0 407 51.4
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.7e-93 347.1 380 53.7
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.7e-93 347.1 375 55.2
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 6.5e-93 345.1 369 54.7
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.5e-92 344.0 380 53.2
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.9e-92 343.6 377 53.3
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 9.4e-92 341.3 375 51.7
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 2.1e-91 340.1 410 50.2
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 4.0e-90 335.9 409 49.9
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 4.0e-90 335.9 371 53.6
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 5.2e-90 335.5 359 54.9
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 6.7e-90 335.1 385 53.5
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 2.2e-88 330.1 416 47.8
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.4e-87 327.4 382 51.8
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 5.3e-87 325.5 395 50.6
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 9.1e-87 324.7 379 52.0
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.9e-85 319.7 415 46.3
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 2.9e-85 319.7 383 50.4
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 6.5e-85 318.5 411 49.1
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 8.5e-85 318.2 377 50.7
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.9e-84 317.0 377 50.4
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 4.2e-84 315.8 383 51.2
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 1.2e-83 314.3 332 57.5
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.6e-83 312.8 426 45.8
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 8.0e-83 311.6 378 49.2
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.0e-82 309.3 387 50.1
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 5.2e-82 308.9 378 48.4
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 6.8e-82 308.5 379 51.7
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 5.7e-81 305.4 379 48.0
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.7e-81 305.4 402 47.0
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.7e-81 305.4 377 51.5
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 9.8e-81 304.7 381 48.6
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.3e-80 304.3 385 49.9
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.7e-80 303.9 403 46.7
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.8e-80 303.1 377 50.9
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 6.3e-80 302.0 371 48.5
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 8.3e-80 301.6 403 46.2
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.1e-79 301.2 387 51.4
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.1e-79 299.3 370 52.2
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 2.0e-78 297.0 380 48.2
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 2.0e-78 297.0 380 48.2
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 5.9e-78 295.4 406 47.8
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.3e-77 293.5 389 46.0
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 8.6e-77 291.6 391 48.1
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.1e-76 291.2 387 45.0
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.5e-76 290.8 389 45.8
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.1e-75 287.0 392 47.2
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 4.7e-75 285.8 380 46.3
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 1.0e-74 284.6 412 46.8
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.3e-74 283.5 397 45.1
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 3.0e-74 283.1 383 45.4
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 8.9e-74 281.6 389 45.5
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 3.4e-73 279.6 368 48.1
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 9.8e-73 278.1 392 46.2
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 4.5e-70 269.2 391 46.8
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 2.3e-69 266.9 428 43.7
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 8.6e-69 265.0 423 43.5
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 8.6e-69 265.0 375 45.1
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.5e-68 264.2 367 48.5
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 5.6e-68 262.3 324 49.4
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.8e-66 257.3 395 45.1
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.3e-66 256.9 374 47.9
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 4.0e-66 256.1 387 41.9
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.8e-66 255.4 379 44.9
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 7.5e-65 251.9 362 46.4
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 6.4e-64 248.8 392 42.6
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 8.3e-64 248.4 383 42.3
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.6e-62 244.2 335 48.1
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.7e-62 243.4 379 41.2
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 5.0e-61 239.2 403 41.2
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 5.0e-61 239.2 401 40.1
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.5e-60 237.7 250 54.8
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.9e-60 237.3 400 40.5
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 4.3e-60 236.1 370 40.8
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.6e-59 234.2 403 39.7
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.6e-59 233.0 265 53.2
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 4.7e-59 232.6 403 40.7
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 8.0e-59 231.9 400 42.2
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.4e-58 231.1 402 39.1
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.8e-58 230.7 274 52.6
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.1e-58 229.9 370 40.0
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 4.0e-58 229.6 370 40.0
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 5.2e-58 229.2 321 46.7
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 3.7e-56 223.0 318 42.8
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 3.2e-55 219.9 401 40.1
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 4.1e-55 219.5 401 39.9
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 4.1e-55 219.5 401 39.9
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.6e-54 217.6 401 39.9
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 7.8e-54 215.3 400 39.0
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 3.0e-53 213.4 400 38.8
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.9e-53 213.0 382 41.4
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.2e-51 208.0 414 38.6
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 8.1e-51 205.3 410 37.3
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.5e-49 201.1 411 36.5
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 3.4e-49 199.9 410 36.8
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 4.4e-49 199.5 386 39.1
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 1.3e-48 198.0 288 44.4
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 2.9e-48 196.8 409 36.2
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 9.2e-47 191.8 384 37.5
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.3e-45 188.0 409 35.2
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 3.9e-45 186.4 406 34.7
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 9.2e-39 165.2 260 41.2
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 7.8e-38 162.2 259 42.1
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 2.3e-37 160.6 237 44.7
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.9e-36 157.5 252 42.9
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 2.5e-36 157.1 228 42.5
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 2.1e-35 154.1 239 48.5
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 2.8e-35 153.7 245 41.2
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.4e-34 151.4 407 33.9
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.1e-34 150.2 348 35.9
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 5.3e-34 149.4 372 33.1
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 6.9e-34 149.1 496 29.4
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.2e-33 148.3 272 38.2
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.0e-33 147.5 249 41.4
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 7.6e-33 145.6 257 37.4
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.2e-32 144.1 391 31.5
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 2.9e-32 143.7 250 38.8
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 6.4e-32 142.5 226 39.8
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 8.4e-32 142.1 352 33.2
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.4e-31 140.6 258 34.9
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 5.4e-31 139.4 384 30.5
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 5.4e-31 139.4 197 43.7
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 9.3e-31 138.7 255 37.6
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.2e-30 138.3 243 38.3
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.6e-30 137.9 249 40.2
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.1e-30 137.5 271 37.3
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 2.7e-30 137.1 243 37.9
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.0e-29 135.2 249 37.8
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.3e-29 134.8 239 38.9
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.7e-29 134.4 264 37.9
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.3e-29 134.0 272 37.9
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.5e-28 131.3 413 30.8
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 4.3e-28 129.8 206 39.8
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 9.6e-28 128.6 234 37.6
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.1e-26 125.2 269 35.7
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.4e-23 114.8 230 34.3
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 1.9e-23 114.4 51 94.1
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.5e-22 110.2 147 46.9
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 6.0e-22 109.4 204 36.3
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.0e-22 109.4 197 39.1
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.5e-20 104.8 270 31.1
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 2.5e-20 104.0 253 32.4
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 2.1e-19 100.9 262 32.8
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 4.8e-19 99.8 203 39.4
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.4e-18 98.2 150 48.0
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 3.4e-17 93.6 91 47.3
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.5e-17 93.2 185 31.9
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.6e-17 92.4 192 31.8
Phvul.005G018900 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.3e-16 91.7 51 88.2
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.7e-16 91.3 122 45.1
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.4e-16 89.4 142 35.2
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 6.4e-16 89.4 142 35.2
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 1.9e-12 77.8 175 33.1
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.4e-12 75.9 113 38.1
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 6.2e-11 72.8 115 44.3
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 2.2e-08 64.3 50 56.0
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 1.2e-06 58.5 84 45.2


User provided reference genes

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