Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 6.5e-165 583.9 289 100.0
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 5.4e-143 511.1 289 87.2
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 3.1e-130 468.8 289 82.4
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 9.9e-129 463.8 285 83.2
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 2.9e-104 382.5 288 71.2
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 7.9e-102 374.4 281 71.5
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 6.9e-98 361.3 281 68.0
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 6.5e-96 354.8 277 68.6
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 1.1e-90 337.4 235 74.0
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 3.2e-87 325.9 290 64.5
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 1.0e-85 320.9 285 63.5
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 7.4e-84 314.7 284 59.5
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 9.1e-82 307.8 295 57.3
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 7.7e-81 304.7 275 59.6
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 1.2e-78 297.4 290 56.9
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 3.6e-78 295.8 289 57.4
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 3.6e-78 295.8 274 56.2
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 4.7e-78 295.4 290 56.2
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 6.1e-78 295.0 206 71.8
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 1.8e-77 293.5 292 56.2
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 5.1e-77 292.0 223 64.1
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 1.5e-76 290.4 264 61.0
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 4.4e-76 288.9 278 58.3
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 7.4e-76 288.1 305 55.7
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 3.1e-74 282.7 259 59.5
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 3.1e-74 282.7 286 57.3
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 9.1e-74 281.2 265 54.7
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 2.6e-73 279.6 260 56.9
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 7.7e-73 278.1 219 65.8
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 1.0e-72 277.7 219 65.3
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 2.2e-72 276.6 254 59.4
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.2e-72 276.6 209 67.0
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 3.8e-72 275.8 209 67.0
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 3.8e-72 275.8 269 58.4
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 3.8e-72 275.8 257 55.3
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 5.0e-72 275.4 242 59.1
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 8.5e-72 274.6 257 57.2
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.1e-71 274.2 209 67.0
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 1.4e-71 273.9 254 58.3
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 1.4e-71 273.9 288 52.8
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 1.9e-71 273.5 285 55.4
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 1.9e-71 273.5 263 55.1
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 3.2e-71 272.7 254 58.3
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.1e-70 270.0 209 65.6
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 2.7e-70 269.6 172 75.0
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 4.7e-70 268.9 263 54.4
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 4.7e-70 268.9 263 54.4
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 8.0e-70 268.1 260 58.1
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 1.0e-69 267.7 283 54.1
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 3.0e-69 266.2 215 59.1
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 6.7e-69 265.0 261 55.6
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 6.7e-69 265.0 363 46.0
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 8.8e-69 264.6 195 65.6
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 2.6e-68 263.1 281 52.3
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 2.6e-68 263.1 201 68.2
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 5.7e-68 261.9 278 53.6
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 2.2e-67 260.0 280 52.5
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 2.8e-67 259.6 278 52.5
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 2.8e-67 259.6 210 62.9
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 3.7e-67 259.2 257 54.9
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 4.8e-67 258.8 256 53.5
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 6.3e-67 258.5 280 52.5
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 4.1e-66 255.8 279 52.3
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 1.2e-65 254.2 259 52.9
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 2.6e-65 253.1 219 59.4
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 5.9e-65 251.9 255 53.3
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 1.3e-64 250.8 282 50.7
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 1.7e-64 250.4 197 62.9
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 8.5e-64 248.1 296 48.3
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 1.1e-63 247.7 266 51.5
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 7.2e-63 245.0 212 60.8
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 7.2e-63 245.0 249 54.2
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 7.2e-63 245.0 249 54.2
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 1.2e-62 244.2 202 59.9
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 1.6e-62 243.8 248 54.8
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 2.1e-62 243.4 212 60.4
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 2.1e-62 243.4 254 53.9
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 2.7e-62 243.0 259 53.3
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 4.7e-62 242.3 221 57.0
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 4.7e-62 242.3 167 70.1
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 3.0e-61 239.6 263 53.6
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 6.8e-61 238.4 228 57.0
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 6.8e-61 238.4 308 47.4
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 1.5e-60 237.3 219 56.2
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 9.7e-60 234.6 172 66.9
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 8.5e-56 221.5 271 48.7
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 4.2e-55 219.2 285 49.1
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 5.5e-55 218.8 401 37.9
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 2.6e-52 209.9 232 51.3
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 1.7e-51 207.2 319 42.3
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 1.7e-51 207.2 200 54.0
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 1.0e-48 198.0 200 52.5
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 2.9e-48 196.4 257 46.7
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 1.6e-46 190.7 166 58.4
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 8.0e-46 188.3 185 57.8
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 4.0e-45 186.0 160 55.0
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 6.8e-45 185.3 166 54.2
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 8.3e-43 178.3 271 43.2
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 2.4e-42 176.8 161 53.4
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 2.4e-42 176.8 195 47.7
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 2.9e-40 169.9 203 50.7
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 1.2e-33 147.9 196 43.4
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 3.6e-30 136.3 140 53.6
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 8.0e-30 135.2 286 39.5
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 8.9e-29 131.7 83 73.5
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 9.8e-28 128.3 133 51.9
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 4.1e-26 122.9 178 44.4
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 5.4e-26 122.5 188 43.6
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 2.3e-24 117.1 168 41.7
Psat5g184640 Pisum sativum HOM05D002956 ORTHO05D009000 7.3e-23 112.1 117 54.7
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 2.8e-22 110.2 175 41.1
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 7.1e-18 95.5 128 46.9
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 3.2e-10 70.1 98 41.8
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 1.6e-09 67.8 99 39.4
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 3.5e-09 66.6 76 53.9
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 2.3e-08 63.9 61 55.7
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 3.9e-08 63.2 140 34.3


User provided reference genes

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