Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 4.2e-209 731.1 364 100.0
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 1.4e-191 672.9 364 90.9
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 1.4e-180 636.3 364 86.5
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 5.5e-177 624.4 364 86.5
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 2.5e-169 599.0 366 82.5
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 1.4e-167 593.2 364 82.1
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.5e-166 589.7 362 81.5
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 7.5e-166 587.4 362 80.1
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 8.2e-165 583.9 362 80.1
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-163 580.1 364 79.9
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 8.0e-160 567.4 363 79.1
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 5.7e-158 561.2 352 78.1
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 2.0e-147 526.2 369 73.2
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 7.8e-147 524.2 368 72.3
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.3e-146 523.5 368 72.0
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 7.3e-145 517.7 369 71.5
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 6.1e-144 514.6 369 71.3
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 3.1e-143 512.3 367 72.5
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 6.4e-141 504.6 367 71.7
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.9e-140 503.1 371 70.6
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 4.1e-140 501.9 367 71.4
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 4.1e-140 501.9 365 70.4
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 5.4e-140 501.5 369 70.5
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.5e-139 498.8 367 70.8
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 1.0e-138 497.3 368 68.5
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.7e-138 496.5 367 70.6
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 3.9e-138 495.4 364 69.5
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 6.6e-138 494.6 362 71.5
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 8.6e-138 494.2 370 69.7
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 2.5e-137 492.7 361 69.5
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 3.3e-137 492.3 364 70.1
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 4.3e-137 491.9 366 69.7
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 4.3e-137 491.9 361 68.7
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 5.6e-137 491.5 367 66.8
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 7.3e-137 491.1 368 70.4
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 1.1e-135 487.3 373 67.6
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.4e-135 486.9 369 68.3
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.6e-134 482.6 373 67.6
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 1.3e-133 480.3 371 67.1
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 1.7e-133 479.9 371 67.1
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 3.7e-133 478.8 371 66.8
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 1.1e-132 477.2 333 73.6
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 4.1e-132 475.3 361 67.0
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 3.5e-131 472.2 387 63.8
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 6.0e-131 471.5 370 68.4
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 7.8e-131 471.1 371 67.1
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 8.6e-130 467.6 366 67.8
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.9e-129 466.5 332 71.4
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.3e-129 465.7 390 61.5
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 4.3e-129 465.3 370 66.5
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 5.6e-129 464.9 360 62.8
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 7.3e-129 464.5 362 66.3
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 7.3e-129 464.5 379 63.9
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 1.6e-128 463.4 361 67.9
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.6e-128 463.4 332 71.1
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 1.6e-128 463.4 332 70.8
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 2.1e-128 463.0 364 66.5
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.1e-128 463.0 362 66.3
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 3.6e-128 462.2 364 64.8
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.8e-127 459.9 362 65.2
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 3.1e-127 459.1 333 70.6
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 2.0e-126 456.4 333 70.3
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 3.4e-126 455.7 362 65.2
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 9.9e-126 454.1 368 62.2
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 1.7e-125 453.4 369 63.7
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.7e-125 453.4 368 62.2
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 2.2e-125 453.0 430 57.7
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 3.7e-125 452.2 358 67.3
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 8.3e-125 451.1 328 70.7
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.1e-124 450.7 362 65.2
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 3.2e-124 449.1 327 66.1
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 9.2e-124 447.6 373 64.3
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 1.6e-123 446.8 359 60.2
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.0e-122 444.1 359 63.5
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 1.3e-122 443.7 375 62.4
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.3e-122 443.0 434 56.7
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 5.1e-122 441.8 362 58.6
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 8.6e-122 441.0 328 68.9
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 8.6e-122 441.0 364 64.0
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 2.5e-121 439.5 359 64.6
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 4.3e-121 438.7 365 63.0
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 7.3e-121 438.0 345 66.1
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 1.1e-119 434.1 356 64.9
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 1.8e-119 433.3 362 61.9
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 3.1e-119 432.6 342 64.3
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 5.2e-119 431.8 362 63.3
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 9.9e-118 427.6 363 62.0
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.7e-117 426.8 370 60.5
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.9e-117 426.0 365 62.2
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 3.8e-117 425.6 358 57.8
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 1.1e-116 424.1 364 61.5
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 2.7e-115 419.5 319 68.7
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 2.3e-114 416.4 364 60.4
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 2.8e-112 409.5 328 64.9
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 4.8e-112 408.7 328 65.2
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.4e-111 407.1 328 65.2
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.0e-111 405.6 368 59.8
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 1.2e-110 404.1 341 62.8
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 3.4e-110 402.5 362 57.5
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.3e-109 400.6 330 64.2
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.7e-109 400.2 362 57.2
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.7e-109 400.2 325 64.9
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 2.9e-109 399.4 328 63.7
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 4.9e-109 398.7 364 58.8
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 6.4e-109 398.3 362 58.3
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 1.1e-108 397.5 326 64.4
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 1.4e-108 397.1 359 57.4
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 1.9e-108 396.7 371 58.2
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 2.4e-108 396.4 361 58.4
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.2e-108 395.6 221 79.6
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.0e-106 391.0 360 58.3
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 8.7e-106 387.9 303 68.3
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 1.1e-105 387.5 349 58.7
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 2.1e-104 383.3 351 58.4
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 3.6e-104 382.5 348 58.6
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 2.4e-100 369.8 347 48.7
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 7.1e-100 368.2 352 59.1
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.0e-98 364.4 301 66.1
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 3.7e-96 355.9 414 47.1
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 4.8e-96 355.5 234 68.8
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.8e-95 353.6 299 65.2
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 5.3e-95 352.1 301 61.8
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 4.5e-94 349.0 277 61.0
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.0e-93 347.8 362 54.4
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 2.2e-93 346.7 350 53.7
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 6.4e-93 345.1 199 75.4
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 2.5e-92 343.2 328 52.1
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 3.2e-92 342.8 212 72.6
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.2e-91 340.9 287 57.8
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.6e-91 339.0 338 52.7
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.8e-90 337.0 338 53.8
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 3.0e-90 336.3 190 76.8
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 3.0e-90 336.3 363 51.2
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.1e-87 326.2 302 60.3
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 4.0e-87 325.9 333 47.7
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 6.5e-85 318.5 336 55.7
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.1e-84 315.1 366 50.8
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-83 314.3 333 55.9
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.2e-83 314.3 334 53.9
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.6e-83 313.9 335 57.0
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 1.6e-83 313.9 335 54.0
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 6.1e-83 312.0 331 49.8
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.0e-82 311.2 332 53.9
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 5.7e-81 305.4 331 54.4
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 4.8e-80 302.4 336 56.0
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 4.8e-80 302.4 336 54.2
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 2.4e-79 300.1 337 52.5
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.4e-78 296.2 362 43.9
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 3.2e-76 289.7 331 51.4
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 7.2e-76 288.5 326 49.1
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 9.4e-76 288.1 183 69.4
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 1.4e-74 284.3 332 51.2
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.9e-74 282.7 335 51.6
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 8.8e-74 281.6 340 50.0
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.3e-65 253.1 181 65.7
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 1.8e-63 247.3 218 49.5
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.9e-60 237.3 366 44.5
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-59 234.6 372 43.5
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 2.5e-52 210.3 322 43.2
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.1e-51 207.2 158 62.7
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 1.4e-50 204.5 109 81.7
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.8e-50 204.1 241 41.5
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 2.0e-49 200.7 110 81.8
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.8e-48 196.8 93 95.7
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 3.4e-17 93.6 102 42.2
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 2.4e-15 87.4 93 57.0
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 7.8e-14 82.4 47 72.3
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 2.3e-13 80.9 48 70.8
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 2.8e-11 73.9 43 79.1
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 2.3e-10 70.9 82 50.0
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 3.1e-10 70.5 40 77.5
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 3.1e-10 70.5 40 77.5
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 2.6e-09 67.4 44 68.2
arahy.Tifrunner.gnm1.ann1.RPY2B8 Arachis hypogaea HOM05D004014 ORTHO05D031593 1.1e-07 62.0 42 69.0
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 2.4e-07 60.8 45 64.4
C08p21400 Brassica napus HOM05D003920 ORTHO05D017698 3.2e-07 60.5 50 60.0
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 6.0e-06 56.2 110 50.0


User provided reference genes

Program Settings