Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G018200 Phaseolus vulgaris HOM05D007594 ORTHO05D009607 0.0e+00 2129.8 1081 100.0
VMungo1080G0650 Vigna mungo HOM05D007594 ORTHO05D009607 0.0e+00 1745.7 1085 83.9
Glyma.11G170937 Glycine max HOM05D007594 ORTHO05D009607 0.0e+00 1534.2 1101 74.4
Lj3g0014217 Lotus japonicus HOM05D007594 ORTHO05D009607 0.0e+00 1226.5 1097 64.0
Psat5g215360 Pisum sativum HOM05D007594 ORTHO05D009607 0.0e+00 1107.4 1268 52.4
Medtr3g013490 Medicago truncatula HOM05D007594 ORTHO05D009607 0.0e+00 1078.9 1153 55.1
arahy.Tifrunner.gnm1.ann1.HR2C9L Arachis hypogaea HOM05D007594 ORTHO05D009607 2.2e-298 1029.2 1102 55.4
arahy.Tifrunner.gnm1.ann1.IJ2ITM Arachis hypogaea HOM05D007594 ORTHO05D009607 5.4e-297 1024.6 1102 55.6
Ca_14092_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 4.2e-257 892.1 952 56.4
TPR.G1438 Trifolium pratense HOM05D007594 ORTHO05D009607 5.7e-238 828.6 984 52.6
Lalb_Chr24g0402831 Lupinus albus HOM05D007594 ORTHO05D009607 1.3e-218 764.2 925 52.9
Ca_14091_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 8.1e-192 675.2 833 51.9
MD00G1152500 Malus domestica HOM05D007594 ORTHO05D009607 8.4e-173 612.1 1118 39.0
Prupe.2G044000 Prunus persica HOM05D007594 ORTHO05D009607 8.1e-168 595.5 1096 38.7
Dinv03295 Davidia involucrata HOM05D007594 ORTHO05D009607 1.7e-165 587.8 1115 38.7
Haze_02988 Corylus avellana HOM05D007594 ORTHO05D009607 1.1e-156 558.5 1073 38.0
TAR633G1990 Trochodendron aralioides HOM05D007594 ORTHO05D009607 3.9e-154 550.1 1166 36.3
Actinidia06215 Actinidia chinensis HOM05D007594 ORTHO05D009607 2.8e-152 543.9 1113 37.3
TPR.G20651 Trifolium pratense HOM05D007594 ORTHO05D009607 1.4e-148 531.6 411 69.6
Thecc.10G140800 Theobroma cacao HOM05D007594 ORTHO05D009607 1.4e-146 525.0 1116 37.5
Hma1.2p1_1342F.1_g276950 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 2.3e-146 524.2 1104 36.9
Duzib128G1040 Durio zibethinus HOM05D007594 ORTHO05D009607 8.2e-144 515.8 1110 36.9
RcHm_v2.0_Chr1g0327541 Rosa chinensis HOM05D007594 ORTHO05D009607 4.1e-143 513.5 1119 35.3
Potri.003G193100 Populus trichocarpa HOM05D007594 ORTHO05D009607 1.6e-139 501.5 1164 34.7
ClCG11G013140 Citrullus lanatus HOM05D007594 ORTHO05D009607 5.7e-137 493.0 1088 34.2
FvH4_7g03921 Fragaria vesca HOM05D007594 ORTHO05D009607 7.4e-137 492.7 1121 34.9
FAN06G1277 Fragaria x ananassa HOM05D007594 ORTHO05D009607 1.1e-135 488.8 1121 34.7
CiPaw.13G016300 Carya illinoinensis HOM05D007594 ORTHO05D009607 7.0e-135 486.1 1022 36.0
Sed0005696 Sechium edule HOM05D007594 ORTHO05D009607 3.8e-133 480.3 1075 34.9
CsaV3_5G029660 Cucumis sativus L. HOM05D007594 ORTHO05D009607 8.5e-133 479.2 1119 32.9
Manes.04G156000 Manihot esculenta HOM05D007594 ORTHO05D009607 2.1e-131 474.6 1150 35.2
CANSAT56G2828 Cannabis sativa HOM05D007594 ORTHO05D009607 5.9e-126 456.4 1094 35.2
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 5.5e-124 449.9 1114 33.7
DCAR_006600 Daucus carota HOM05D007594 ORTHO05D009607 5.7e-121 439.9 1142 32.6
Rhsim07G0071100 Rhododendron simsii HOM05D007594 ORTHO05D009607 1.0e-117 429.1 1111 33.5
Gorai.011G220800 Gossypium raimondii HOM05D007594 ORTHO05D009607 6.5e-117 426.4 1207 33.2
vmacro13773 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 4.2e-116 423.7 1135 33.0
Nn7g36922 Nelumbo nucifera HOM05D007594 ORTHO05D009607 3.6e-115 420.6 1097 32.7
Aqoxy1G00415 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 2.6e-113 414.5 1143 31.4
MBI13_g07373_MAGBIO Magnolia biondii HOM05D007594 ORTHO05D009607 4.8e-112 410.2 1171 32.0
TWI63G1387 Tripterygium wilfordii HOM05D007594 ORTHO05D009607 1.2e-110 405.6 1100 31.9
Atru.chr12.1243 Acer truncatum HOM05D007594 ORTHO05D009607 1.6e-110 405.2 1035 34.2
Cc00_g06100 Coffea canephora HOM05D007594 ORTHO05D009607 2.9e-109 401.0 1111 32.4
Gohir.D10G197300 Gossypium hirsutum HOM05D007594 ORTHO05D009607 6.6e-109 399.8 933 35.0
Hma1.2p1_1730F.1_g299670 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 1.9e-108 398.3 1211 31.7
Solyc07g048100.3 Solanum lycopersicum HOM05D007594 ORTHO05D009607 1.6e-107 395.2 1118 31.8
Ciclev10003355m.g Citrus clementina HOM05D007594 ORTHO05D009607 2.1e-107 394.8 932 35.3
AUR62023865 Chenopodium quinoa HOM05D007594 ORTHO05D009607 4.7e-107 393.7 1176 31.0
GSVIVG01036598001 Vitis vinifera HOM05D007594 ORTHO05D009607 1.5e-105 388.7 904 36.9
Gohir.A10G189500 Gossypium hirsutum HOM05D007594 ORTHO05D009607 4.4e-105 387.1 1234 31.8
CAN.G897.9 Capsicum annuum HOM05D007594 ORTHO05D009607 1.3e-101 375.6 1042 32.3
Peaxi162Scf02035g00032 Petunia axillaris HOM05D007594 ORTHO05D009607 6.6e-101 373.2 1119 31.5
Nitab4.5_0004215g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 8.6e-101 372.9 1028 31.2
Nitab4.5_0004358g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 7.3e-100 369.8 1033 32.0
FAN01G0543 Fragaria x ananassa HOM05D007594 ORTHO05D009607 3.4e-97 360.9 1111 31.1
SGA_v2.0_scaffold124G33645 Striga asiatica HOM05D007594 ORTHO05D009607 1.4e-95 355.5 1108 29.2
ECA246G0181 Erigeron canadensis HOM05D007594 ORTHO05D009607 6.0e-94 350.1 1127 31.1
SalBow5G4015 Salvia bowleyana HOM05D007594 ORTHO05D009607 2.3e-93 348.2 1145 29.9
Sopen07g024530 Solanum pennellii HOM05D007594 ORTHO05D009607 5.6e-92 343.6 911 32.3
ATR0307G127 Amborella trichopoda HOM05D007594 ORTHO05D009607 7.0e-87 326.6 1216 29.4
Eucgr.G03206 Eucalyptus grandis HOM05D007594 ORTHO05D009607 1.2e-86 325.9 1071 29.2
EL10Ac3g05954 Beta vulgaris HOM05D007594 ORTHO05D009607 4.6e-86 323.9 1064 29.9
AUR62002319 Chenopodium quinoa HOM05D007594 ORTHO05D009607 8.6e-85 319.7 1152 29.2
HanXRQChr05g0146261 Helianthus annuus HOM05D007594 ORTHO05D009607 1.5e-81 308.9 1075 29.3
Lsat_1_v5_gn_1_118241 Lactuca sativa HOM05D007594 ORTHO05D009607 7.8e-78 296.6 1074 28.1
Sc11g0006300 Simmondsia chinensis HOM05D007594 ORTHO05D009607 6.8e-74 283.5 594 35.4
PGSC0003DMG400006140 Solanum tuberosum HOM05D007594 ORTHO05D009607 1.5e-68 265.8 613 33.8
PSO339G5236 Papaver somniferum HOM05D007594 ORTHO05D009607 5.6e-68 263.8 929 29.3
THA.LOC104826746 Tarenaya hassleriana HOM05D007594 ORTHO05D009607 3.2e-63 248.1 875 29.6
Lj9P657T24 Lonicera japonica HOM05D007594 ORTHO05D009607 2.7e-62 245.0 322 43.8
Migut.B01185 Erythranthe guttata HOM05D007594 ORTHO05D009607 3.0e-61 241.5 294 44.6
PSO384G4678 Papaver somniferum HOM05D007594 ORTHO05D009607 3.3e-60 238.0 888 29.2
Hund03165 Selenicereus undatus HOM05D007594 ORTHO05D009607 3.5e-54 218.0 1002 26.7
Hund03166 Selenicereus undatus HOM05D007594 ORTHO05D009607 3.9e-53 214.5 1013 26.9
MELO3C011810.2 Cucumis melo HOM05D007594 ORTHO05D009607 5.6e-52 210.7 863 27.5
Os03g0811200 Oryza sativa ssp. japonica HOM05D007594 ORTHO05D009607 2.8e-51 208.4 1118 26.6
Lalb_Chr24g0402821 Lupinus albus HOM05D007594 ORTHO05D009607 2.1e-46 192.2 146 68.5
Zm00001eb062110 Zea mays HOM05D007594 ORTHO05D009607 5.1e-45 187.6 284 42.6
Nn032s41616 Nelumbo nucifera HOM05D007594 ORTHO05D009607 7.4e-44 183.7 181 48.1
unitig_22.g5331 Utricularia gibba HOM05D007594 ORTHO05D009607 2.1e-43 182.2 864 25.5
Nn7g38492 Nelumbo nucifera HOM05D007594 ORTHO05D009607 1.4e-34 152.9 748 27.4
Aqoxy1G00417 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 6.9e-34 150.6 531 29.2
Sc11g0006290 Simmondsia chinensis HOM05D007594 ORTHO05D009607 5.9e-33 147.5 455 31.0
Hund03164 Selenicereus undatus HOM05D007594 ORTHO05D009607 1.5e-28 132.9 137 43.1
CSS0016538 Camellia sinensis var. sinensis HOM05D007594 ORTHO05D009607 4.7e-22 111.3 97 55.7
Atru.chr12.1242 Acer truncatum HOM05D007594 ORTHO05D009607 1.5e-20 106.3 87 62.1
Lj2g0024514 Lotus japonicus HOM05D007594 ORTHO05D009607 2.6e-20 105.5 64 79.7
AagrBONN_evm.TU.Sc2ySwM_368.2306 Anthoceros agrestis HOM05D007594 ORTHO05D009607 8.8e-13 80.5 169 29.6
SEGI_38959 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 1.6e-09 69.7 70 41.4
SEGI_25891 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 1.7e-08 66.2 420 25.2
CBR_g49793 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-08 65.5 142 33.8
ATR0445G001 Amborella trichopoda HOM05D007594 ORTHO05D009607 3.8e-08 65.1 245 33.5
Aqoxy1G00418 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 3.8e-08 65.1 53 52.8
Sopen07g024520 Solanum pennellii HOM05D007594 ORTHO05D009607 6.5e-08 64.3 87 43.7
Aqoxy1G00416 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 8.5e-08 63.9 90 40.0
COL.COLO4_04921 Corchorus olitorius HOM05D007594 ORTHO05D009607 4.2e-07 61.6 60 51.7
Cc01_g17980 Coffea canephora HOM05D000001 ORTHO05D002182 1.2e-06 60.1 170 25.3


User provided reference genes

Program Settings