Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G017200 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 5.1e-173 610.9 296 100.0
VMungo1080G1585 Vigna mungo HOM05D008089 ORTHO05D000166 2.6e-100 369.4 314 63.7
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 1.2e-41 174.5 135 65.2
Glyma.19G047600 Glycine max HOM05D008089 ORTHO05D000166 8.8e-40 168.3 302 39.7
Glyma.19G045900 Glycine max HOM05D008089 ORTHO05D000166 1.1e-34 151.4 306 35.9
Glyma.19G051700 Glycine max HOM05D008089 ORTHO05D000166 1.0e-27 128.3 258 34.9
Glyma.13G045500 Glycine max HOM05D008089 ORTHO05D000166 1.9e-26 124.0 273 34.4
Lj1g0019614 Lotus japonicus HOM05D008089 ORTHO05D000166 1.8e-24 117.5 219 37.0
Lj2g0013276 Lotus japonicus HOM05D008089 ORTHO05D000166 6.8e-24 115.5 220 35.0
Phvul.004G061300 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 2.6e-23 113.6 179 39.1
Phvul.004G060700 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 5.7e-23 112.5 179 38.0
Phvul.004G061600 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 1.3e-22 111.3 169 39.6
Medtr4g107170 Medicago truncatula HOM05D008089 ORTHO05D000166 8.3e-22 108.6 147 38.1
Glyma.15G196300 Glycine max HOM05D008089 ORTHO05D000166 3.1e-21 106.7 252 32.5
Phvul.009G213800 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 3.1e-21 106.7 287 30.3
arahy.Tifrunner.gnm1.ann1.4RS8DG Arachis hypogaea HOM05D008089 ORTHO05D000166 4.1e-21 106.3 314 31.5
Phvul.004G060500 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 5.4e-21 105.9 179 37.4
Medtr2g049530 Medicago truncatula HOM05D008089 ORTHO05D000166 1.2e-20 104.8 108 50.0
Medtr2g049610 Medicago truncatula HOM05D008089 ORTHO05D000166 1.6e-20 104.4 143 41.3
Phvul.004G060900 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 2.7e-20 103.6 178 37.1
Lj6g0015605 Lotus japonicus HOM05D008089 ORTHO05D000166 4.5e-20 102.8 151 39.1
TPR.G1875 Trifolium pratense HOM05D008089 ORTHO05D000166 5.9e-20 102.4 119 42.0
TPR.G23667 Trifolium pratense HOM05D008089 ORTHO05D000166 5.9e-20 102.4 285 28.4
TPR.G1873 Trifolium pratense HOM05D008089 ORTHO05D000166 7.7e-20 102.1 112 43.8
VMungo1309G0257 Vigna mungo HOM05D008089 ORTHO05D000166 1.3e-19 101.3 276 28.6
Phvul.004G061000 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 2.3e-19 100.5 148 39.9
Lj6g0011242 Lotus japonicus HOM05D008089 ORTHO05D000166 2.9e-19 100.1 106 47.2
Phvul.004G061100 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 3.8e-19 99.8 164 38.4
Phvul.004G061500 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 3.8e-19 99.8 151 40.4
Psat1g133560 Pisum sativum HOM05D008089 ORTHO05D026066 5.0e-19 99.4 131 42.0
Ca_04905_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 8.6e-19 98.6 138 39.1
TPR.G28062 Trifolium pratense HOM05D008089 ORTHO05D000166 1.1e-18 98.2 101 40.6
arahy.Tifrunner.gnm1.ann1.G9T3SU Arachis hypogaea HOM05D008089 ORTHO05D000166 1.9e-18 97.4 234 29.1
Lj1g0015182 Lotus japonicus HOM05D008089 ORTHO05D000166 2.5e-18 97.1 121 38.0
TPR.G6617 Trifolium pratense HOM05D008089 ORTHO05D000166 2.5e-18 97.1 97 42.3
VMungo0251G0242 Vigna mungo HOM05D008089 ORTHO05D000166 2.5e-18 97.1 136 36.0
Medtr2g049630 Medicago truncatula HOM05D008089 ORTHO05D000166 4.2e-18 96.3 143 40.6
Ca_27244_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 5.5e-18 95.9 138 37.7
Medtr4g045977 Medicago truncatula HOM05D008089 ORTHO05D000166 7.2e-18 95.5 162 35.8
Phvul.004G060600 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 7.2e-18 95.5 113 43.4
TPR.G23685 Trifolium pratense HOM05D008089 ORTHO05D000166 7.2e-18 95.5 220 30.0
Medtr6g005440 Medicago truncatula HOM05D008089 ORTHO05D000166 1.6e-17 94.4 188 30.9
arahy.Tifrunner.gnm1.ann1.UG5UID Arachis hypogaea HOM05D008089 ORTHO05D000166 2.1e-17 94.0 234 29.5
Lj1g0009381 Lotus japonicus HOM05D008089 ORTHO05D000166 2.1e-17 94.0 132 36.4
Glyma.05G140000 Glycine max HOM05D000307 ORTHO05D000166 2.8e-17 93.6 133 36.1
Lalb_Chr11g0073241 Lupinus albus HOM05D008089 ORTHO05D000166 2.8e-17 93.6 146 37.7
Ca_13731_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 3.6e-17 93.2 149 30.9
TPR.G28961 Trifolium pratense HOM05D008089 ORTHO05D000166 3.6e-17 93.2 127 37.8
arahy.Tifrunner.gnm1.ann1.P24S13 Arachis hypogaea HOM05D000307 ORTHO05D000166 4.7e-17 92.8 145 34.5
Lj5g0004947 Lotus japonicus HOM05D000307 ORTHO05D000166 6.1e-17 92.4 97 39.2
Lj5g0023944 Lotus japonicus HOM05D000307 ORTHO05D000166 6.1e-17 92.4 97 39.2
TPR.G23696 Trifolium pratense HOM05D008089 ORTHO05D000166 6.1e-17 92.4 287 28.6
Glyma.08G095300 Glycine max HOM05D008089 ORTHO05D000166 8.0e-17 92.0 135 36.3
TPR.G6633 Trifolium pratense HOM05D008089 ORTHO05D000166 8.0e-17 92.0 97 38.1
Lalb_Chr05g0223381 Lupinus albus HOM05D000307 ORTHO05D000166 1.0e-16 91.7 134 35.8
arahy.Tifrunner.gnm1.ann1.Q9AYPR Arachis hypogaea HOM05D008089 ORTHO05D000166 1.4e-16 91.3 295 30.8
Medtr1g115290 Medicago truncatula HOM05D008089 ORTHO05D000166 1.8e-16 90.9 119 39.5
VMungo0647G1946 Vigna mungo HOM05D008089 ORTHO05D000166 1.8e-16 90.9 138 32.6
TPR.G1441 Trifolium pratense HOM05D000307 ORTHO05D000166 2.3e-16 90.5 150 28.0
Ca_02546_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 3.0e-16 90.1 255 29.8
Phvul.002G183400 Phaseolus vulgaris HOM05D000307 ORTHO05D000166 6.8e-16 89.0 136 33.1
Lj1g0022539 Lotus japonicus HOM05D008089 ORTHO05D000166 8.8e-16 88.6 97 38.1
Lalb_Chr08g0233261 Lupinus albus HOM05D008089 ORTHO05D000166 1.2e-15 88.2 299 26.4
Glyma.08G095500 Glycine max HOM05D008089 ORTHO05D000166 2.0e-15 87.4 135 34.1
Lj5g0018268 Lotus japonicus HOM05D000307 ORTHO05D000166 3.4e-15 86.7 170 31.8
Ca_02497_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 1.3e-14 84.7 125 39.2
Ca_31023_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 1.3e-14 84.7 128 40.6
Psat1g082000 Pisum sativum HOM05D000307 ORTHO05D000166 2.2e-14 84.0 152 28.9
Medtr6g005450 Medicago truncatula HOM05D008089 ORTHO05D000166 1.1e-13 81.6 173 30.6
Medtr6g018920 Medicago truncatula HOM05D000307 ORTHO05D000166 1.1e-13 81.6 152 27.6
TPR.G26403 Trifolium pratense HOM05D008089 ORTHO05D000166 1.8e-13 80.9 98 34.7
TPR.G32449 Trifolium pratense HOM05D000307 ORTHO05D000166 2.4e-13 80.5 150 28.0
Lalb_Chr23g0265491 Lupinus albus HOM05D000307 ORTHO05D000166 3.1e-13 80.1 205 27.3
Medtr1g114730 Medicago truncatula HOM05D000307 ORTHO05D000166 4.1e-13 79.7 151 28.5
TPR.G7343 Trifolium pratense HOM05D008089 ORTHO05D000166 5.4e-13 79.3 88 42.0
TPR.G7340 Trifolium pratense HOM05D008089 ORTHO05D000166 7.0e-13 79.0 108 38.9
Psat6g001960 Pisum sativum HOM05D000307 ORTHO05D000166 1.2e-12 78.2 134 28.4
Lj1C1007T18 Lonicera japonica HOM05D000307 ORTHO05D000166 2.0e-12 77.4 102 39.2
Lalb_Chr08g0233361 Lupinus albus HOM05D008089 ORTHO05D000166 2.7e-12 77.0 164 29.9
Phvul.004G061400 Phaseolus vulgaris HOM05D008089 ORTHO05D000166 1.0e-11 75.1 99 46.5
Potri.002G255700 Populus trichocarpa HOM05D000307 ORTHO05D000166 1.0e-11 75.1 148 29.7
Cc02_g23180 Coffea canephora HOM05D000307 ORTHO05D000166 3.8e-11 73.2 100 33.0
Haze_14188 Corylus avellana HOM05D000307 ORTHO05D000166 3.8e-11 73.2 112 31.2
Potri.012G109900 Populus trichocarpa HOM05D000307 ORTHO05D000166 5.0e-11 72.8 148 28.4
COL.COLO4_22397 Corchorus olitorius HOM05D000307 ORTHO05D000166 1.1e-10 71.6 150 30.0
Lj1C1007T16 Lonicera japonica HOM05D000307 ORTHO05D000166 1.1e-10 71.6 126 35.7
Oeu064601.1 Olea europaea HOM05D000307 ORTHO05D000166 1.1e-10 71.6 178 28.1
Duzib264G0859 Durio zibethinus HOM05D000307 ORTHO05D000166 1.5e-10 71.2 144 26.4
Sabra02G0194300 Salix brachista HOM05D028904 ORTHO05D000166 4.3e-10 69.7 144 29.9
arahy.Tifrunner.gnm1.ann1.PV8IVT Arachis hypogaea HOM05D008089 ORTHO05D000166 5.6e-10 69.3 101 41.6
Oeu061767.1 Olea europaea HOM05D000307 ORTHO05D000166 5.6e-10 69.3 144 30.6
Migut.B00770 Erythranthe guttata HOM05D000307 ORTHO05D000166 2.8e-09 67.0 108 30.6
Cfa007888 Carpinus fangiana HOM05D000307 ORTHO05D000166 3.6e-09 66.6 99 32.3
ECA246G0964 Erigeron canadensis HOM05D000307 ORTHO05D000166 3.6e-09 66.6 100 32.0
Thecc.01G021900 Theobroma cacao HOM05D000307 ORTHO05D000166 4.7e-09 66.2 105 28.6
MBI10_g35440_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 6.1e-09 65.9 134 29.9
Oeu023403.1 Olea europaea HOM05D000307 ORTHO05D000166 6.1e-09 65.9 177 28.8
Oeu061769.1 Olea europaea HOM05D000307 ORTHO05D000166 6.1e-09 65.9 144 29.2
CSS0028822 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 8.0e-09 65.5 192 25.5
Lsat_1_v5_gn_0_21801 Lactuca sativa HOM05D000307 ORTHO05D000166 8.0e-09 65.5 103 34.0
CSS0034462 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.0e-08 65.1 149 28.9
Migut.N01290 Erythranthe guttata HOM05D000307 ORTHO05D000166 1.0e-08 65.1 114 29.8
MBI10_g26051_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.0e-08 65.1 122 29.5
Migut.G00091 Erythranthe guttata HOM05D000307 ORTHO05D000166 1.4e-08 64.7 130 29.2
Migut.G01095 Erythranthe guttata HOM05D000307 ORTHO05D000166 1.4e-08 64.7 130 29.2
Hma1.2p1_0038F.1_g024040 Hydrangea macrophylla HOM05D000307 ORTHO05D000166 1.4e-08 64.7 105 27.6
CSS0003566 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.8e-08 64.3 169 27.2
CiPaw.03G065100 Carya illinoinensis HOM05D000307 ORTHO05D000166 1.8e-08 64.3 136 31.6
CsaV3_2G019470 Cucumis sativus L. HOM05D000307 ORTHO05D000166 2.3e-08 63.9 97 32.0
Oeu046899.1 Olea europaea HOM05D000307 ORTHO05D000166 2.3e-08 63.9 135 28.1
CSS0047056 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.0e-08 63.5 229 25.8
Lsat_1_v5_gn_9_60601 Lactuca sativa HOM05D000307 ORTHO05D000166 4.0e-08 63.2 105 29.5
SalBow7G2221 Salvia bowleyana HOM05D000307 ORTHO05D000166 4.0e-08 63.2 105 34.3
Lsat_1_v5_gn_5_103840 Lactuca sativa HOM05D000307 ORTHO05D000166 5.2e-08 62.8 85 32.9
Prupe.2G110900 Prunus persica HOM05D000307 ORTHO05D000166 5.2e-08 62.8 200 26.5
CSS0000924 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 6.8e-08 62.4 120 30.0
HanXRQChr10g0294541 Helianthus annuus HOM05D000307 ORTHO05D000166 8.9e-08 62.0 109 29.4
HanXRQChr15g0464231 Helianthus annuus HOM05D000307 ORTHO05D000166 8.9e-08 62.0 109 29.4
Manes.15G161100 Manihot esculenta HOM05D028904 ORTHO05D000166 8.9e-08 62.0 89 33.7
Nitab4.5_0000787g0180 Nicotiana tabacum HOM05D000307 ORTHO05D000166 8.9e-08 62.0 187 27.8
SGA_v2.0_scaffold304G47921 Striga asiatica HOM05D000307 ORTHO05D000166 8.9e-08 62.0 107 30.8
Rhsim08G0003700 Rhododendron simsii HOM05D000307 ORTHO05D000166 1.2e-07 61.6 184 26.1
TAR624G0600 Trochodendron aralioides HOM05D000307 ORTHO05D000166 1.2e-07 61.6 109 26.6
CSS0019629 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 2.0e-07 60.8 169 26.0
ClCG02G000370 Citrullus lanatus HOM05D000307 ORTHO05D000166 2.0e-07 60.8 135 30.4
Peaxi162Scf00076g01010 Petunia axillaris HOM05D000307 ORTHO05D000166 2.0e-07 60.8 101 29.7
TAR362G0043 Trochodendron aralioides HOM05D000307 ORTHO05D000166 2.0e-07 60.8 101 31.7
TAR362G1006 Trochodendron aralioides HOM05D000307 ORTHO05D000166 2.6e-07 60.5 101 31.7
CSS0012311 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.4e-07 60.1 220 23.2
ECA234G3622 Erigeron canadensis HOM05D000307 ORTHO05D000166 3.4e-07 60.1 78 33.3
MD02G1297800 Malus domestica HOM05D000307 ORTHO05D000166 4.4e-07 59.7 95 29.5
Aqoxy7G02773 Aquilegia oxysepala HOM05D000307 ORTHO05D000166 5.7e-07 59.3 104 26.0
CSS0020770 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 5.7e-07 59.3 99 29.3
COL.COLO4_31651 Corchorus olitorius HOM05D028763 ORTHO05D000166 5.7e-07 59.3 110 27.3
Peaxi162Scf00011g00124 Petunia axillaris HOM05D000307 ORTHO05D000166 5.7e-07 59.3 112 33.0
CSS0029060 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.5e-07 58.9 100 29.0
TAR362G0570 Trochodendron aralioides HOM05D000307 ORTHO05D000166 7.5e-07 58.9 101 30.7
CSS0008018 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 9.8e-07 58.5 169 25.4
MD17G1250500 Malus domestica HOM05D000307 ORTHO05D000166 9.8e-07 58.5 108 29.6
TAR625G0022 Trochodendron aralioides HOM05D000307 ORTHO05D000166 9.8e-07 58.5 101 29.7
TAR625G1049 Trochodendron aralioides HOM05D000307 ORTHO05D000166 9.8e-07 58.5 101 31.7
CSS0036006 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.3e-06 58.2 99 31.3
CSS0039576 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.3e-06 58.2 169 26.6
Sed0006669 Sechium edule HOM05D000307 ORTHO05D000166 1.3e-06 58.2 170 25.9
TAR625G0813 Trochodendron aralioides HOM05D000307 ORTHO05D000166 1.3e-06 58.2 101 31.7
Prupe.3G148900 Prunus persica HOM05D000307 ORTHO05D000166 1.7e-06 57.8 111 28.8
MELO3C023227.2 Cucumis melo HOM05D000307 ORTHO05D000166 2.2e-06 57.4 128 30.5
Nitab4.5_0007355g0010 Nicotiana tabacum HOM05D000307 ORTHO05D000166 2.2e-06 57.4 196 24.5
Peaxi162Scf00129g00103 Petunia axillaris HOM05D000307 ORTHO05D000166 2.2e-06 57.4 109 31.2
TWI34G1561 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 2.2e-06 57.4 143 28.7
Ca_04374_v3 Cicer arietinum L. HOM05D008089 ORTHO05D000166 2.9e-06 57.0 110 30.9
CSS0022233 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 4.9e-06 56.2 98 28.6
CSS0036324 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 4.9e-06 56.2 98 28.6
TAR381G0994 Trochodendron aralioides HOM05D000307 ORTHO05D000166 4.9e-06 56.2 111 25.2
FvH4_2g27520 Fragaria vesca HOM05D000307 ORTHO05D000166 6.4e-06 55.8 83 28.9
FAN15G0593 Fragaria x ananassa HOM05D000307 ORTHO05D000166 6.4e-06 55.8 83 28.9
FAN24G2406 Fragaria x ananassa HOM05D000307 ORTHO05D000166 6.4e-06 55.8 83 28.9
FAN27G3405 Fragaria x ananassa HOM05D000307 ORTHO05D000166 6.4e-06 55.8 83 28.9
PGSC0003DMG400027886 Solanum tuberosum HOM05D000307 ORTHO05D000166 6.4e-06 55.8 165 27.3
TAR625G0700 Trochodendron aralioides HOM05D000307 ORTHO05D000166 8.3e-06 55.5 137 30.7


User provided reference genes

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