Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 6.4e-179 630.6 305 100.0
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.7e-124 449.1 306 73.2
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 6.8e-120 434.5 307 73.0
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.2e-116 423.7 307 70.7
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 6.8e-112 407.9 307 68.1
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 9.8e-111 404.1 307 67.4
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 5.4e-109 398.3 310 67.4
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 9.2e-109 397.5 306 67.6
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 1.1e-106 390.6 310 65.8
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 3.3e-106 389.0 303 67.7
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 5.6e-106 388.3 310 66.1
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 7.3e-106 387.9 302 66.9
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 1.2e-105 387.1 304 67.1
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 1.0e-104 384.0 310 65.2
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 2.0e-103 379.8 307 63.8
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 1.7e-102 376.7 305 65.2
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 9.2e-101 370.9 307 59.6
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 2.0e-100 369.8 355 56.3
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 7.8e-100 367.9 303 62.0
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 2.3e-99 366.3 302 62.3
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 6.6e-99 364.8 307 60.9
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.5e-98 363.6 307 59.3
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.5e-98 363.6 307 59.6
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 2.5e-98 362.8 307 60.6
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 3.3e-98 362.5 302 60.9
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 7.3e-98 361.3 307 60.6
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 1.2e-97 360.5 309 60.2
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 2.1e-97 359.8 302 60.9
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 4.7e-97 358.6 302 60.6
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 6.2e-97 358.2 307 58.6
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 8.1e-97 357.8 303 61.1
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 1.8e-96 356.7 302 60.9
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 3.1e-96 355.9 307 59.0
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 3.1e-96 355.9 302 58.9
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 3.1e-96 355.9 302 60.9
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 5.2e-96 355.1 305 58.4
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 5.2e-96 355.1 302 60.3
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 8.9e-96 354.4 302 59.3
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 8.9e-96 354.4 302 59.3
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 1.2e-95 354.0 303 61.1
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.5e-95 353.6 303 60.7
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 2.0e-95 353.2 307 58.6
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 3.4e-95 352.4 308 59.7
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 7.5e-95 351.3 307 58.0
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 9.8e-95 350.9 302 59.3
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 1.3e-94 350.5 305 59.3
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 1.7e-94 350.1 302 59.3
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 3.7e-94 349.0 305 57.0
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 6.4e-94 348.2 295 59.7
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 8.3e-94 347.8 308 58.8
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 8.3e-94 347.8 306 58.2
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 1.1e-93 347.4 306 58.8
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 1.1e-93 347.4 308 58.8
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 1.4e-93 347.1 308 57.5
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 1.4e-93 347.1 308 58.1
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 1.9e-93 346.7 305 57.4
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 5.4e-93 345.1 308 59.4
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 5.4e-93 345.1 308 58.4
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 7.1e-93 344.7 307 56.0
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 6.0e-92 341.7 307 55.7
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 1.3e-91 340.5 307 55.4
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 1.7e-91 340.1 299 56.9
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.7e-91 340.1 307 57.0
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 2.3e-91 339.7 307 55.4
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 3.0e-91 339.3 304 56.9
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 3.0e-91 339.3 307 56.7
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 3.9e-91 339.0 307 55.0
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 5.1e-91 338.6 302 57.0
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 8.6e-91 337.8 309 55.0
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 1.1e-90 337.4 278 64.7
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 5.6e-90 335.1 307 58.0
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 5.6e-90 335.1 314 54.5
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 1.6e-89 333.6 307 55.0
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.6e-89 333.6 302 57.6
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 3.6e-89 332.4 303 56.4
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 6.2e-89 331.6 302 55.6
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 8.1e-89 331.3 312 55.1
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 8.1e-89 331.3 307 55.7
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 6.8e-88 328.2 302 56.0
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 8.9e-88 327.8 302 56.3
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 5.8e-87 325.1 302 55.6
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 9.9e-87 324.3 315 54.9
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 2.2e-86 323.2 304 56.6
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 2.2e-86 323.2 315 54.9
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 2.9e-86 322.8 302 55.3
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 2.9e-86 322.8 295 56.3
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 3.8e-86 322.4 302 55.3
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 8.4e-86 321.2 302 54.6
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 8.4e-86 321.2 302 55.0
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 8.4e-86 321.2 302 55.0
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 8.4e-86 321.2 302 55.0
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 1.1e-85 320.9 322 53.7
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 1.9e-85 320.1 302 55.0
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 3.2e-85 319.3 302 55.0
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 5.4e-85 318.5 302 54.6
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 7.1e-85 318.2 302 55.3
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 1.2e-84 317.4 302 54.3
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 5.1e-83 312.0 299 53.2
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 6.6e-83 311.6 302 53.0
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 8.6e-83 311.2 302 52.3
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.9e-82 310.1 301 55.5
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 1.2e-81 307.4 308 52.9
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 1.2e-81 307.4 302 53.0
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 6.2e-81 305.1 305 55.7
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 4.4e-79 298.9 308 53.6
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.7e-78 297.0 261 59.8
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 4.9e-78 295.4 304 54.3
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 1.6e-76 290.4 309 50.8
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 3.5e-76 289.3 342 48.0
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 3.0e-75 286.2 307 49.5
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 8.7e-75 284.6 302 51.0
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 1.5e-74 283.9 273 53.1
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 1.1e-72 277.7 299 48.8
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 3.1e-72 276.2 245 58.4
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 1.2e-71 274.2 236 58.5
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 5.4e-69 265.4 306 47.7
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 5.4e-69 265.4 308 44.8
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 2.1e-68 263.5 309 50.5
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 2.7e-68 263.1 303 44.6
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 8.7e-67 258.1 273 52.4
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 1.8e-64 250.4 288 48.3
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 5.8e-63 245.4 303 44.2
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.8e-59 233.8 302 44.7
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 2.0e-55 220.3 295 44.1
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 1.9e-53 213.8 202 54.0
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 4.6e-52 209.1 161 65.2
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 6.0e-52 208.8 307 37.5
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 1.0e-43 181.4 147 64.6
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 6.7e-43 178.7 303 36.0
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.1e-42 177.9 160 57.5
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 3.2e-37 159.8 148 56.1
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 1.8e-32 144.1 147 53.7
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 6.9e-32 142.1 238 39.9
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 9.1e-32 141.7 302 33.4
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.7e-30 137.5 116 63.8
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 7.2e-29 132.1 158 48.7
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 1.8e-27 127.5 296 31.1
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.1e-26 124.8 139 48.9
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 3.3e-26 123.2 249 32.1
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 3.2e-21 106.7 223 37.7
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.6e-20 104.4 85 58.8
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 8.2e-17 92.0 85 55.3
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.2e-15 88.2 94 47.9
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 9.4e-13 78.6 73 49.3
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 2.1e-12 77.4 238 29.4
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.4e-11 74.7 166 31.3
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 3.7e-09 66.6 65 50.8
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 4.1e-08 63.2 40 70.0
A06p11500 Brassica napus HOM05D000746 ORTHO05D005767 5.9e-07 59.3 299 22.7
C05p13620 Brassica napus HOM05D004669 ORTHO05D005767 5.9e-07 59.3 299 22.7
BolC5t30098H Brassica oleracea HOM05D004669 ORTHO05D005767 5.9e-07 59.3 299 22.7
BraA06t24327Z Brassica rapa HOM05D000746 ORTHO05D005767 5.9e-07 59.3 299 22.7
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 7.7e-07 58.9 52 51.9
BcaC07g38791 Brassica carinata HOM05D004669 ORTHO05D005767 1.0e-06 58.5 300 22.7
C08p17210 Brassica napus HOM05D004669 ORTHO05D005767 1.0e-06 58.5 299 22.4
BolC8t49350H Brassica oleracea HOM05D004669 ORTHO05D005767 1.0e-06 58.5 299 22.4
BcaB03g13059 Brassica carinata HOM05D004669 ORTHO05D005767 1.3e-06 58.2 299 22.4
A08p31560 Brassica napus HOM05D004669 ORTHO05D005767 1.3e-06 58.2 299 22.4
BraA08t35078Z Brassica rapa HOM05D004669 ORTHO05D005767 1.3e-06 58.2 299 22.4
AT1G15440 Arabidopsis thaliana HOM05D004669 ORTHO05D005767 2.3e-06 57.4 293 22.5
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 2.3e-06 57.4 298 22.5


User provided reference genes

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