Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.1e-73 278.9 137 100.0
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 2.0e-63 245.7 128 93.0
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 3.0e-51 205.3 128 78.1
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 3.9e-43 178.3 128 72.7
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 4.5e-39 164.9 126 64.3
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 3.8e-38 161.8 132 63.6
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 7.2e-37 157.5 128 60.9
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 8.8e-35 150.6 127 59.8
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 5.7e-34 147.9 153 53.6
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 8.5e-22 107.5 77 71.4
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.2e-21 105.1 132 47.7
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 3.6e-20 102.1 135 45.9
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 1.0e-19 100.5 134 45.5
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.4e-19 100.1 131 47.3
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.8e-19 99.8 130 45.4
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 3.0e-19 99.0 131 42.0
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 5.2e-19 98.2 131 46.6
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 8.8e-19 97.4 132 43.2
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 3.4e-18 95.5 131 44.3
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 5.7e-18 94.7 71 67.6
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 3.7e-17 92.0 72 68.1
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 3.7e-17 92.0 94 50.0
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 6.3e-17 91.3 132 40.9
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 8.3e-17 90.9 136 41.9
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.4e-16 90.1 136 44.9
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 1.8e-16 89.7 95 52.6
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.8e-16 89.7 132 43.2
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 3.1e-16 89.0 136 40.4
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.3e-16 88.2 113 45.1
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 5.3e-16 88.2 132 42.4
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 7.0e-16 87.8 94 52.1
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 9.1e-16 87.4 106 49.1
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.2e-15 87.0 81 54.3
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.6e-15 86.7 69 62.3
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 2.0e-15 86.3 138 42.8
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 3.5e-15 85.5 98 49.0
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.5e-15 85.1 142 40.1
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.9e-15 84.7 129 40.3
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.9e-15 84.7 129 40.3
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 7.7e-15 84.3 145 40.7
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 7.7e-15 84.3 65 64.6
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 7.7e-15 84.3 131 42.7
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 7.7e-15 84.3 108 49.1
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 1.0e-14 84.0 146 40.4
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.0e-14 84.0 81 61.7
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 5.0e-14 81.6 80 60.0
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.0e-14 81.6 80 60.0
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 6.5e-14 81.3 89 52.8
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 8.5e-14 80.9 71 56.3
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 2.5e-13 79.3 116 38.8
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.5e-13 79.3 79 59.5
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.2e-13 79.0 74 58.1
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.2e-13 79.0 71 59.2
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.2e-13 79.0 71 59.2
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 4.2e-13 78.6 65 56.9
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 7.2e-13 77.8 110 41.8
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 7.2e-13 77.8 65 58.5
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 2.1e-12 76.3 76 55.3
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 3.6e-12 75.5 77 51.9
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 6.1e-12 74.7 64 56.2
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 6.1e-12 74.7 74 54.1
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 8.0e-12 74.3 64 56.2
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.0e-11 73.9 65 50.8
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.4e-11 73.6 134 36.6
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.8e-11 73.2 64 60.9
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 3.0e-11 72.4 64 54.7
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 4.0e-11 72.0 64 54.7
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 4.0e-11 72.0 64 54.7
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.0e-11 72.0 69 56.5
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 5.2e-11 71.6 64 54.7
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 6.8e-11 71.2 64 54.7
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 8.8e-11 70.9 64 54.7
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.2e-10 70.5 64 53.1
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.5e-10 70.1 129 38.0
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.6e-10 69.3 97 39.2
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 5.7e-10 68.2 65 53.8
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 2.8e-09 65.9 64 54.7
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 3.7e-09 65.5 56 60.7
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.8e-08 63.2 59 50.8
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.8e-08 63.2 59 50.8
arahy.Tifrunner.gnm1.ann1.D1V4I4 Arachis hypogaea HOM05D003796 ORTHO05D004486 5.4e-08 61.6 39 64.1
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 9.1e-08 60.8 55 49.1
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.7e-07 59.3 39 66.7
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.5e-07 58.9 82 41.5
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 3.5e-07 58.9 79 44.3
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 5.9e-07 58.2 55 54.5
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 1.0e-06 57.4 93 34.4
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 2.9e-06 55.8 81 32.1
arahy.Tifrunner.gnm1.ann1.IM3V03 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.8e-06 55.5 44 59.1
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 3.8e-06 55.5 84 33.3
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 6.6e-06 54.7 65 36.9
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 6.6e-06 54.7 77 37.7
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 8.6e-06 54.3 78 35.9
VMungo0647G0793 Vigna mungo HOM05D001541 ORTHO05D000088 8.6e-06 54.3 42 57.1


User provided reference genes

Program Settings