Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.9e-34 148.7 79 100.0
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 1.3e-27 125.9 73 93.2
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 6.6e-27 123.6 73 91.8
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 7.3e-26 120.2 72 88.9
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 3.6e-25 117.9 77 76.6
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 1.1e-24 116.3 73 84.9
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 3.4e-23 111.3 71 78.9
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 7.6e-23 110.2 74 75.7
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 7.6e-23 110.2 74 75.7
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 2.2e-22 108.6 76 72.4
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.9e-22 108.2 71 77.5
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 2.9e-22 108.2 73 79.5
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 4.9e-22 107.5 71 76.1
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 6.4e-22 107.1 70 77.1
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 8.4e-22 106.7 76 72.4
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.1e-21 106.3 73 75.3
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.1e-21 106.3 76 67.1
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.4e-21 105.1 71 71.8
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 3.2e-21 104.8 69 72.5
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 3.2e-21 104.8 69 72.5
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 5.4e-21 104.0 71 74.6
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 7.1e-21 103.6 72 72.2
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 9.3e-21 103.2 71 73.2
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 9.3e-21 103.2 71 73.2
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 9.3e-21 103.2 70 75.7
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 1.2e-20 102.8 71 74.6
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.6e-20 102.4 71 73.2
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.6e-20 102.4 73 74.0
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 2.7e-20 101.7 73 71.2
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.7e-20 101.7 70 72.9
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.5e-20 101.3 70 74.3
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.6e-20 100.9 71 73.2
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 4.6e-20 100.9 71 74.6
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 7.8e-20 100.1 68 70.6
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 1.0e-19 99.8 71 71.8
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.3e-19 99.4 70 74.3
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 3.0e-19 98.2 71 70.4
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 5.1e-19 97.4 71 71.8
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 6.6e-19 97.1 71 66.2
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 8.7e-19 96.7 71 70.4
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 8.7e-19 96.7 71 66.2
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.1e-18 96.3 69 68.1
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 1.5e-18 95.9 71 66.2
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 1.5e-18 95.9 69 66.7
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.9e-18 95.5 73 68.5
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.9e-18 95.5 71 66.2
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.5e-18 95.1 72 68.1
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 3.3e-18 94.7 73 61.6
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 5.6e-18 94.0 72 66.7
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 7.3e-18 93.6 70 67.1
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 7.3e-18 93.6 70 68.6
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.8e-17 91.7 74 58.1
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 3.6e-17 91.3 73 60.3
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.6e-17 91.3 71 69.0
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.6e-17 91.3 71 69.0
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 6.2e-17 90.5 68 64.7
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 6.2e-17 90.5 70 62.9
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 6.2e-17 90.5 70 62.9
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.1e-16 89.7 73 60.3
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.4e-16 89.4 71 60.6
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.4e-16 89.4 101 53.5
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 1.8e-16 89.0 56 76.8
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 2.4e-16 88.6 72 58.3
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.1e-16 88.2 65 67.7
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 4.0e-16 87.8 71 57.7
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 5.3e-16 87.4 71 60.6
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 5.3e-16 87.4 73 58.9
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 5.3e-16 87.4 73 58.9
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 5.3e-16 87.4 71 57.7
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 6.9e-16 87.0 71 59.2
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 6.9e-16 87.0 71 59.2
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 6.9e-16 87.0 71 57.7
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 6.9e-16 87.0 71 59.2
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 3.4e-15 84.7 71 57.7
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.9e-13 79.0 56 67.9
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.6e-12 75.9 73 52.1
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 2.7e-12 75.1 56 62.5
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 1.8e-11 72.4 70 52.9
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 9.6e-10 66.6 72 44.4
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.6e-09 65.9 71 46.5
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 4.8e-09 64.3 74 41.9
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 6.2e-09 63.9 70 54.3
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 8.1e-09 63.5 74 40.5
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.1e-08 63.2 71 42.3
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 1.1e-08 63.2 73 45.2
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 1.4e-08 62.8 74 41.9
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 1.8e-08 62.4 73 42.5
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.4e-08 62.0 74 41.9
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 4.0e-08 61.2 74 44.6
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 4.0e-08 61.2 74 47.3
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 5.3e-08 60.8 71 40.8
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 5.3e-08 60.8 74 43.2
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 5.3e-08 60.8 73 42.5
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 6.9e-08 60.5 74 40.5
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 6.9e-08 60.5 73 42.5
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 6.9e-08 60.5 74 40.5
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 6.9e-08 60.5 74 41.9
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 6.9e-08 60.5 73 41.1
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 9.0e-08 60.1 73 41.1
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 9.0e-08 60.1 72 41.7
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 9.0e-08 60.1 73 41.1
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 9.0e-08 60.1 73 41.1
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 9.0e-08 60.1 73 39.7
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 9.0e-08 60.1 71 42.3
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 1.2e-07 59.7 83 42.2
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.2e-07 59.7 76 44.7
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 1.2e-07 59.7 75 42.7
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 1.5e-07 59.3 73 41.1
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 1.5e-07 59.3 75 42.7
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 2.0e-07 58.9 73 38.4
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 2.0e-07 58.9 71 46.5
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 2.0e-07 58.9 74 40.5
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.0e-07 58.9 72 41.7
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 2.0e-07 58.9 74 39.2
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 2.0e-07 58.9 71 40.8
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.6e-07 58.5 74 44.6
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 3.4e-07 58.2 73 42.5
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 3.4e-07 58.2 36 75.0
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.4e-07 58.2 73 42.5
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 3.4e-07 58.2 74 39.2
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 3.4e-07 58.2 73 37.0
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 4.5e-07 57.8 74 43.2
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 4.5e-07 57.8 73 37.0
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 4.5e-07 57.8 73 39.7
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 4.5e-07 57.8 73 39.7
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 5.8e-07 57.4 82 41.5
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 5.8e-07 57.4 73 38.4
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 9.9e-07 56.6 72 36.1
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 9.9e-07 56.6 75 45.3
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.3e-06 56.2 74 40.5
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.3e-06 56.2 71 35.2
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.3e-06 56.2 73 37.0
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 2.9e-06 55.1 74 41.9
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 2.9e-06 55.1 73 43.8
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 3.8e-06 54.7 74 37.8
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 3.8e-06 54.7 72 40.3
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 4.9e-06 54.3 72 43.1
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 6.4e-06 53.9 73 37.0
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 6.4e-06 53.9 73 38.4


User provided reference genes

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