Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 4.0e-105 384.8 197 100.0
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 2.0e-93 345.9 197 91.4
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 1.3e-92 343.2 197 90.4
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 8.0e-90 334.0 197 87.8
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 2.3e-76 289.3 197 77.2
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 1.1e-75 287.0 197 77.2
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 1.1e-75 287.0 198 77.3
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 1.5e-75 286.6 188 83.0
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 6.2e-74 281.2 193 79.3
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 8.1e-74 280.8 198 77.3
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 1.1e-73 280.4 197 76.1
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.4e-73 280.0 196 75.5
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 3.4e-72 275.4 197 76.6
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 3.8e-71 271.9 197 74.6
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 1.1e-70 270.4 197 74.6
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 3.2e-70 268.9 197 74.1
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 7.8e-69 264.2 197 72.1
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 1.0e-68 263.8 197 71.6
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 6.6e-68 261.2 197 73.1
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 1.1e-67 260.4 196 74.0
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 3.3e-67 258.8 197 73.1
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 5.6e-67 258.1 198 73.2
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 5.6e-67 258.1 197 69.0
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 7.3e-67 257.7 200 71.0
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 1.6e-66 256.5 198 73.2
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 3.6e-66 255.4 196 71.4
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 3.6e-66 255.4 199 71.9
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 1.1e-65 253.8 199 71.9
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.6e-64 249.2 195 70.8
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 2.6e-64 249.2 192 70.3
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.4e-64 248.8 196 68.4
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.8e-64 248.1 196 69.4
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 5.8e-64 248.1 196 69.4
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 2.2e-63 246.1 171 77.8
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 2.2e-63 246.1 197 67.5
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.9e-63 245.7 196 67.9
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 2.9e-63 245.7 196 67.9
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 3.8e-63 245.4 196 68.9
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 3.8e-63 245.4 196 67.3
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 6.4e-63 244.6 195 69.7
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 8.4e-63 244.2 185 70.8
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 8.4e-63 244.2 169 78.7
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.1e-62 243.8 182 72.5
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.4e-62 243.4 182 72.0
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 1.9e-62 243.0 195 70.3
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 2.4e-62 242.7 196 68.9
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 3.2e-62 242.3 196 68.9
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 5.4e-62 241.5 198 70.7
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 7.1e-62 241.1 197 69.5
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 9.3e-62 240.7 170 74.7
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 1.2e-61 240.4 168 75.6
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 1.6e-61 240.0 204 67.6
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.6e-61 240.0 199 68.8
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 2.7e-61 239.2 196 66.3
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 2.7e-61 239.2 167 76.0
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 3.5e-61 238.8 197 69.5
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 3.5e-61 238.8 196 68.4
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 3.5e-61 238.8 148 85.8
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 4.6e-61 238.4 197 69.0
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 4.6e-61 238.4 203 69.5
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.8e-61 237.7 199 69.8
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 7.8e-61 237.7 202 64.4
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.7e-60 236.5 148 84.5
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 3.0e-60 235.7 141 85.1
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 3.0e-60 235.7 193 67.9
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 3.9e-60 235.3 181 70.2
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 3.9e-60 235.3 136 86.8
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.6e-60 234.6 199 67.3
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 1.1e-59 233.8 148 81.1
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 2.5e-59 232.6 198 67.2
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 4.3e-59 231.9 183 71.6
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 7.3e-59 231.1 198 66.2
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 7.3e-59 231.1 140 82.9
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 1.3e-58 230.3 198 67.2
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 1.3e-58 230.3 201 67.7
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.6e-58 229.9 196 66.3
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 2.1e-58 229.6 197 67.5
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.8e-58 229.2 142 83.8
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 2.8e-58 229.2 201 66.7
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 3.6e-58 228.8 181 72.4
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 6.2e-58 228.0 142 83.1
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.1e-57 227.3 141 81.6
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 1.8e-57 226.5 142 82.4
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 3.1e-57 225.7 166 72.9
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 3.1e-57 225.7 197 66.5
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 4.0e-57 225.3 199 64.8
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 6.9e-57 224.6 148 80.4
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 6.9e-57 224.6 194 66.5
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 6.9e-57 224.6 148 79.7
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 9.0e-57 224.2 193 67.4
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 1.2e-56 223.8 201 65.2
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 2.0e-56 223.0 148 80.4
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 2.6e-56 222.6 169 71.6
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.6e-56 222.6 203 65.0
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 4.5e-56 221.9 141 83.0
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 4.5e-56 221.9 142 82.4
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 7.6e-56 221.1 147 79.6
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 7.6e-56 221.1 143 81.1
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 7.6e-56 221.1 140 80.0
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 1.3e-55 220.3 141 82.3
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.3e-55 220.3 147 78.2
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 1.3e-55 220.3 196 65.3
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 2.2e-55 219.5 141 80.9
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.9e-55 219.2 179 69.8
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 2.9e-55 219.2 202 63.9
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 3.8e-55 218.8 141 82.3
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 3.8e-55 218.8 146 81.5
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 4.9e-55 218.4 142 79.6
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 4.9e-55 218.4 142 79.6
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 4.9e-55 218.4 142 79.6
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 4.9e-55 218.4 142 79.6
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 1.1e-54 217.2 176 68.2
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 3.2e-54 215.7 141 78.7
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 4.2e-54 215.3 199 64.8
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 7.1e-54 214.5 150 74.7
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 1.2e-53 213.8 142 79.6
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.6e-53 213.4 140 80.7
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 4.6e-53 211.8 141 79.4
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 6.0e-53 211.5 147 77.6
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.8e-52 209.9 196 62.8
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 3.9e-52 208.8 135 79.3
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 5.1e-52 208.4 189 64.6
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 4.3e-51 205.3 144 75.7
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 9.6e-51 204.1 194 60.3
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.6e-50 203.4 115 89.6
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.6e-50 203.4 115 89.6
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.8e-50 202.6 143 74.8
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 6.2e-50 201.4 113 90.3
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 1.1e-49 200.7 113 92.0
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.4e-49 200.3 115 87.8
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.4e-49 199.5 177 62.7
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 3.1e-49 199.1 140 77.1
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 5.3e-49 198.4 164 65.9
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 9.0e-49 197.6 112 90.2
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 7.6e-48 194.5 176 64.2
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.2e-46 189.1 196 58.7
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 4.2e-46 188.7 198 59.1
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 5.5e-46 188.3 157 63.7
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.1e-46 188.0 196 58.2
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 2.7e-45 186.0 168 63.7
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 6.7e-44 181.4 142 70.4
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.1e-43 180.6 141 68.1
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.5e-43 180.3 190 56.8
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 3.3e-43 179.1 111 84.7
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 5.7e-43 178.3 141 67.4
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 1.6e-42 176.8 109 79.8
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 3.7e-42 175.6 163 62.6
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 9.0e-41 171.0 348 37.6
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.6e-40 169.5 143 60.8
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 7.6e-40 167.9 150 63.3
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 1.7e-39 166.8 163 62.0
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 3.2e-38 162.5 111 73.0
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 2.1e-37 159.8 113 71.7
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 2.5e-35 152.9 157 54.8
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.3e-35 152.1 160 55.6
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 1.9e-30 136.7 109 63.3
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 2.7e-29 132.9 79 83.5
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 7.9e-29 131.3 128 57.8
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 4.8e-26 122.1 128 53.9
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 5.9e-24 115.2 91 69.2
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 2.9e-23 112.8 94 64.9
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 2.9e-23 112.8 94 66.0
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.9e-22 110.2 87 71.3
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.2e-21 107.5 87 70.1
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.2e-21 107.5 87 70.1
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 2.8e-18 96.3 73 67.1
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 4.8e-18 95.5 112 50.0
Lalb_Chr12g0198741 Lupinus albus HOM05D004106 ORTHO05D004381 5.3e-17 92.0 82 58.5
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 2.2e-15 86.7 47 89.4
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 1.9e-14 83.6 49 81.6
Psat5g263840 Pisum sativum HOM05D001198 ORTHO05D001599 7.2e-14 81.6 89 49.4
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 8.0e-13 78.2 44 88.6
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 2.4e-09 66.6 38 86.8
AagrBONN_evm.TU.Sc2ySwM_344.958 Anthoceros agrestis HOM05D010958 ORTHO05D004381 8.5e-07 58.2 138 34.1
Ca_01978_v3 Cicer arietinum L. HOM05D001198 ORTHO05D001599 1.9e-06 57.0 156 34.0
Medtr2g088390 Medicago truncatula HOM05D001198 ORTHO05D001599 2.5e-06 56.6 84 47.6
AagrBONN_evm.TU.Sc2ySwM_362.2265 Anthoceros agrestis HOM05D010958 ORTHO05D004381 9.4e-06 54.7 140 32.1


User provided reference genes

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