Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 0.0e+00 1272.7 705 100.0
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 0.0e+00 1152.5 706 91.6
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 2.8e-294 1015.0 723 79.0
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 3.9e-280 968.0 701 78.5
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 1.9e-210 736.5 769 59.9
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 1.3e-198 697.2 810 54.3
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 3.5e-188 662.5 820 54.6
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 7.6e-183 644.8 796 54.0
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 3.0e-179 632.9 782 51.2
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 1.3e-174 617.5 774 52.1
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 6.1e-172 608.6 776 53.7
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 4.2e-165 585.9 751 51.4
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 6.3e-161 572.0 731 52.3
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 7.5e-114 415.6 749 39.3
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 1.6e-111 407.9 752 39.0
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 2.1e-108 397.5 736 39.1
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 1.3e-97 361.7 747 38.3
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 1.4e-96 358.2 756 37.3
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 1.3e-94 351.7 697 38.5
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 1.3e-94 351.7 755 37.5
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 1.7e-94 351.3 746 38.3
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 9.0e-91 339.0 754 37.5
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 3.8e-89 333.6 755 36.7
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 1.1e-88 332.0 740 36.9
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 2.4e-88 330.9 783 37.3
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 4.2e-88 330.1 701 36.9
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.5e-87 327.0 702 36.5
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 4.6e-87 326.6 737 37.2
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.3e-86 325.1 700 36.3
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 2.3e-86 324.3 745 35.0
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 6.2e-84 316.2 770 37.1
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 8.1e-84 315.8 702 36.2
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 5.3e-83 313.2 705 36.0
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 3.8e-81 307.0 810 33.5
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 4.9e-81 306.6 746 33.9
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 1.9e-80 304.7 756 33.9
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 2.4e-80 304.3 724 34.9
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 3.2e-80 303.9 760 34.3
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 5.4e-80 303.1 763 35.0
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 9.3e-80 302.4 736 34.9
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 1.2e-79 302.0 751 34.8
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 1.6e-79 301.6 772 33.8
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 2.3e-78 297.7 773 34.4
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 8.7e-78 295.8 744 36.0
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 1.5e-77 295.0 755 35.8
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 5.6e-77 293.1 681 35.8
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 5.6e-77 293.1 751 34.1
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 1.6e-76 291.6 765 35.4
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 2.1e-76 291.2 746 35.0
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 2.4e-75 287.7 749 33.4
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 3.1e-75 287.3 765 35.4
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 1.2e-74 285.4 769 34.9
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 4.5e-74 283.5 757 33.7
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 8.4e-73 279.3 742 33.8
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 5.5e-72 276.6 755 31.8
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 9.3e-72 275.8 727 33.6
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.6e-71 275.0 692 36.3
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 2.1e-71 274.6 738 32.9
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 3.3e-69 267.3 754 32.9
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 3.3e-69 267.3 741 32.9
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 7.4e-69 266.2 772 33.2
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.3e-68 265.4 739 32.6
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 6.2e-68 263.1 744 34.3
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 1.4e-67 261.9 882 29.8
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 3.1e-67 260.8 740 32.8
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 4.5e-66 256.9 758 32.3
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 5.8e-66 256.5 755 32.3
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 2.2e-65 254.6 726 32.4
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 8.4e-65 252.7 750 31.7
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 3.2e-64 250.8 723 31.8
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 3.2e-64 250.8 743 31.5
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 5.5e-64 250.0 749 31.6
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 1.3e-62 245.4 767 31.7
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 3.0e-62 244.2 762 31.8
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 8.7e-62 242.7 762 30.8
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 4.3e-61 240.4 762 31.4
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 1.6e-60 238.4 711 30.4
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 2.2e-60 238.0 894 28.2
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 1.5e-58 231.9 721 30.9
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 5.0e-57 226.9 719 30.7
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 1.4e-56 225.3 705 30.4
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 4.2e-56 223.8 729 32.5
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 3.3e-53 214.2 708 29.8
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 2.2e-52 211.5 709 29.9
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 4.5e-50 203.8 733 28.9
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 1.3e-49 202.2 734 29.8
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.1e-48 199.1 758 28.0
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 3.2e-48 197.6 773 29.8
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 5.5e-48 196.8 701 29.5
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 2.1e-47 194.9 760 29.3
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 6.1e-47 193.4 701 29.5
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 4.4e-45 187.2 173 56.6
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 3.7e-44 184.1 312 40.1
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 3.1e-43 181.0 720 28.8
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 2.0e-42 178.3 684 28.8
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 2.9e-41 174.5 721 27.2
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 2.5e-40 171.4 701 28.4
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 4.2e-40 170.6 704 29.3
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 1.0e-38 166.0 726 28.0
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 2.3e-38 164.9 698 30.4
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 3.0e-38 164.5 730 29.0
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 1.1e-37 162.5 125 59.2
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 1.3e-36 159.1 697 26.8
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 1.7e-36 158.7 716 27.4
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 1.7e-36 158.7 716 27.4
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 2.8e-36 157.9 715 27.7
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 4.8e-36 157.1 715 27.6
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 3.1e-35 154.5 707 27.9
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 2.6e-34 151.4 715 27.3
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 3.5e-34 151.0 726 27.7
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 3.5e-34 151.0 726 27.7
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 2.9e-33 147.9 737 27.5
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 5.0e-33 147.1 725 26.6
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 6.5e-33 146.7 768 26.0
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 4.2e-32 144.1 754 27.7
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 7.2e-32 143.3 707 28.4
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 2.1e-31 141.7 690 26.5
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 2.7e-31 141.4 707 28.7
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 3.6e-31 141.0 717 25.0
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 4.7e-31 140.6 709 28.2
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 8.0e-31 139.8 746 27.6
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.8e-30 138.7 293 37.5
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 8.8e-30 136.3 118 59.3
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 1.2e-29 136.0 709 27.9
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 2.7e-23 114.8 777 23.4
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 6.1e-23 113.6 773 24.8
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 3.3e-16 91.3 753 22.6
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 4.2e-16 90.9 231 28.6
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 2.6e-13 81.6 249 30.9
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 4.4e-13 80.9 661 25.0
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 7.5e-13 80.1 782 22.1
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 2.2e-12 78.6 173 39.3
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 5.4e-11 73.9 95 43.2
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 2.3e-06 58.5 89 42.7


User provided reference genes

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