Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 2.0e-74 282.3 140 100.0
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 6.8e-59 230.7 132 87.1
Phvul.010G166000 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 4.7e-52 208.0 132 81.8
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 3.0e-46 188.7 136 74.3
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 3.1e-43 178.7 134 71.6
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 4.5e-18 95.1 60 76.7
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 5.8e-18 94.7 60 76.7
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 5.8e-18 94.7 65 67.7
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 1.3e-17 93.6 63 71.4
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 1.9e-16 89.7 83 57.8
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 1.9e-16 89.7 59 74.6
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 2.5e-16 89.4 83 59.0
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 3.2e-16 89.0 83 57.8
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 5.5e-16 88.2 83 57.8
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 6.0e-15 84.7 59 64.4
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 7.9e-15 84.3 58 65.5
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 1.0e-14 84.0 83 53.0
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.0e-14 84.0 56 66.1
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 3.9e-14 82.0 59 62.7
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 1.5e-13 80.1 66 59.1
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 1.9e-13 79.7 56 64.3
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 2.5e-13 79.3 66 57.6
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 2.5e-13 79.3 56 62.5
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 7.4e-13 77.8 65 56.9
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 7.4e-13 77.8 84 48.8
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 1.3e-12 77.0 65 55.4
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 1.6e-12 76.6 56 60.7
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 2.1e-12 76.3 56 64.3
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 2.8e-12 75.9 56 58.9
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 2.8e-12 75.9 77 48.1
Lalb_Chr08g0235081 Lupinus albus HOM05D007513 ORTHO05D008148 3.7e-12 75.5 64 54.7
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 4.8e-12 75.1 56 58.9
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 4.8e-12 75.1 59 57.6
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 4.8e-12 75.1 56 62.5
Lalb_Chr24g0403261 Lupinus albus HOM05D007513 ORTHO05D008148 4.8e-12 75.1 64 54.7
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 6.3e-12 74.7 84 46.4
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 6.3e-12 74.7 58 62.1
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 6.3e-12 74.7 84 42.9
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 6.3e-12 74.7 80 46.2
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 8.2e-12 74.3 59 59.3
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 1.1e-11 73.9 67 50.7
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 1.4e-11 73.6 59 55.9
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 1.4e-11 73.6 80 48.8
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 1.8e-11 73.2 64 53.1
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 2.4e-11 72.8 60 58.3
Lj6g0018022 Lotus japonicus HOM05D007513 ORTHO05D008148 3.1e-11 72.4 63 58.7
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.1e-11 72.4 63 52.4
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 4.1e-11 72.0 50 68.0
Lj6g0007185 Lotus japonicus HOM05D007513 ORTHO05D008148 5.3e-11 71.6 59 61.0
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 6.9e-11 71.2 49 65.3
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 6.9e-11 71.2 49 65.3
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 1.2e-10 70.5 67 56.7
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 1.2e-10 70.5 83 42.2
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 1.2e-10 70.5 61 52.5
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 1.2e-10 70.5 87 46.0
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 2.0e-10 69.7 57 56.1
arahy.Tifrunner.gnm1.ann1.QIF42D Arachis hypogaea HOM05D007513 ORTHO05D008148 2.6e-10 69.3 66 57.6
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 2.6e-10 69.3 43 76.7
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 2.6e-10 69.3 75 46.7
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 4.5e-10 68.6 63 52.4
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 4.5e-10 68.6 52 61.5
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 5.9e-10 68.2 56 51.8
ECA240G1454 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.9e-10 68.2 74 45.9
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 1.0e-09 67.4 64 48.4
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 1.0e-09 67.4 60 53.3
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 1.0e-09 67.4 61 49.2
arahy.Tifrunner.gnm1.ann1.N7EVBW Arachis hypogaea HOM05D007513 ORTHO05D008148 1.3e-09 67.0 43 74.4
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 1.3e-09 67.0 52 59.6
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 1.7e-09 66.6 52 57.7
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 2.2e-09 66.2 80 42.5
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 2.2e-09 66.2 56 51.8
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 2.2e-09 66.2 60 46.7
GSVIVG01023476001 Vitis vinifera HOM05D007513 ORTHO05D008148 2.2e-09 66.2 66 47.0
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 2.9e-09 65.9 73 46.6
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 2.9e-09 65.9 84 42.9
TPR.G16351 Trifolium pratense HOM05D007513 ORTHO05D008148 3.8e-09 65.5 114 38.6
ECA234G4583 Erigeron canadensis HOM05D000004 ORTHO05D000002 5.0e-09 65.1 101 36.6
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 5.0e-09 65.1 56 51.8
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 6.5e-09 64.7 92 38.0
Aqoxy7G03437 Aquilegia oxysepala HOM05D007513 ORTHO05D008148 1.1e-08 63.9 66 47.0
BcaNung02064 Brassica carinata HOM05D014277 ORTHO05D008148 1.1e-08 63.9 84 42.9
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 1.1e-08 63.9 67 46.3
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 3.2e-08 62.4 82 37.8
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 4.2e-08 62.0 82 37.8
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 4.2e-08 62.0 56 50.0
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 5.5e-08 61.6 82 37.8
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 5.5e-08 61.6 82 37.8
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 7.2e-08 61.2 82 37.8
Psat6g240160 Pisum sativum HOM05D003122 ORTHO05D000002 7.2e-08 61.2 61 42.6
HPP92_010626 Vanilla planifolia HOM05D007513 ORTHO05D008148 7.2e-08 61.2 59 49.2
HPP92_010652 Vanilla planifolia HOM05D007513 ORTHO05D008148 7.2e-08 61.2 59 49.2
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 9.3e-08 60.8 51 49.0
Psat7g263080 Pisum sativum HOM05D003122 ORTHO05D000002 1.2e-07 60.5 68 36.8
arahy.Tifrunner.gnm1.ann1.X3Z0KH Arachis hypogaea HOM05D003009 ORTHO05D008148 1.6e-07 60.1 50 58.0
Lalb_Chr12g0204591 Lupinus albus HOM05D000004 ORTHO05D000002 1.6e-07 60.1 69 36.2
Aa31LG6G14500 Aethionema arabicum HOM05D007513 ORTHO05D008148 2.1e-07 59.7 60 45.0
Psat1g080840 Pisum sativum HOM05D003122 ORTHO05D000002 2.1e-07 59.7 61 41.0
Psat5g135120 Pisum sativum HOM05D000004 ORTHO05D011729 2.1e-07 59.7 68 42.6
Psat3g051400 Pisum sativum HOM05D003122 ORTHO05D000002 2.7e-07 59.3 110 28.2
Ca_25300_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 3.6e-07 58.9 79 38.0
RcHm_v2.0_Chr5g0053551 Rosa chinensis HOM05D015974 ORTHO05D008148 4.6e-07 58.5 59 47.5
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 6.1e-07 58.2 61 45.9
COL.COLO4_11560 Corchorus olitorius HOM05D007513 ORTHO05D008148 6.1e-07 58.2 84 38.1
Psat2g183440 Pisum sativum HOM05D003122 ORTHO05D012218 6.1e-07 58.2 77 36.4
FvH4_1g17450 Fragaria vesca HOM05D015974 ORTHO05D008148 7.9e-07 57.8 59 47.5
FAN19G1675 Fragaria x ananassa HOM05D015974 ORTHO05D008148 7.9e-07 57.8 59 47.5
FAN23G1252 Fragaria x ananassa HOM05D015974 ORTHO05D008148 7.9e-07 57.8 59 47.5
FAN28G2668 Fragaria x ananassa HOM05D015974 ORTHO05D008148 7.9e-07 57.8 59 47.5
arahy.Tifrunner.gnm1.ann1.9ST4S6 Arachis hypogaea HOM05D007513 ORTHO05D008148 1.0e-06 57.4 41 63.4
Psat4g099280 Pisum sativum HOM05D003122 ORTHO05D000002 1.0e-06 57.4 53 45.3
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 1.3e-06 57.0 79 40.5
RcHm_v2.0_Chr5g0053611 Rosa chinensis HOM05D015974 ORTHO05D008148 1.3e-06 57.0 57 47.4
EL10Ac8g20627 Beta vulgaris HOM05D007513 ORTHO05D008148 1.8e-06 56.6 56 46.4
Ca_12127_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.8e-06 56.6 75 36.0
Thhalv10000379m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 1.8e-06 56.6 51 47.1
Psat5g009600 Pisum sativum HOM05D000004 ORTHO05D011729 1.8e-06 56.6 63 38.1
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 1.8e-06 56.6 75 40.0
Psat2g123280 Pisum sativum HOM05D014306 ORTHO05D011729 2.3e-06 56.2 81 30.9
Ah.14g088990 Amaranthus hybridus HOM05D007513 ORTHO05D008148 3.0e-06 55.8 56 44.6
Psat5g112280 Pisum sativum HOM05D003122 ORTHO05D000002 3.9e-06 55.5 77 35.1
arahy.Tifrunner.gnm1.ann1.NLBN4J Arachis hypogaea HOM05D007513 ORTHO05D008148 5.1e-06 55.1 46 58.7
arahy.Tifrunner.gnm1.ann1.0NDU7B Arachis hypogaea HOM05D007513 ORTHO05D008148 6.7e-06 54.7 40 62.5
Psat2g101960 Pisum sativum HOM05D003122 ORTHO05D012218 6.7e-06 54.7 77 35.1
ECA246G3913 Erigeron canadensis HOM05D000004 ORTHO05D000002 8.7e-06 54.3 63 42.9
RcHm_v2.0_Chr5g0082941 Rosa chinensis HOM05D000004 ORTHO05D000002 8.7e-06 54.3 48 45.8


User provided reference genes

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