Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 6.0e-83 310.8 162 100.0
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 5.3e-79 297.7 160 96.9
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 1.6e-67 259.6 163 85.9
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 4.6e-67 258.1 162 82.1
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 1.2e-62 243.4 165 82.4
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 2.2e-61 239.2 165 77.6
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 1.9e-60 236.1 165 78.2
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 4.2e-60 235.0 165 78.2
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 4.3e-57 224.9 160 74.4
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 9.6e-57 223.8 168 72.0
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 1.6e-56 223.0 155 74.8
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 3.7e-56 221.9 162 71.0
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 3.7e-56 221.9 164 71.3
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 6.3e-56 221.1 162 74.1
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 3.1e-55 218.8 155 73.5
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 3.1e-55 218.8 155 72.3
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 3.1e-55 218.8 157 74.5
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 3.1e-55 218.8 163 71.8
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 6.9e-55 217.6 165 69.7
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 1.5e-54 216.5 166 71.7
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 2.0e-54 216.1 162 72.2
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 5.9e-54 214.5 166 69.3
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 5.9e-54 214.5 166 69.3
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 5.9e-54 214.5 166 69.3
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 5.9e-54 214.5 163 71.8
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 5.9e-54 214.5 163 71.8
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 1.0e-53 213.8 159 73.0
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 1.0e-53 213.8 163 71.8
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 1.3e-53 213.4 162 69.1
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 2.2e-53 212.6 163 71.2
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 2.9e-53 212.2 166 68.7
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 6.5e-53 211.1 167 67.7
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 6.5e-53 211.1 166 68.7
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 6.5e-53 211.1 159 72.3
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 6.5e-53 211.1 160 71.2
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 8.4e-53 210.7 166 69.3
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 1.1e-52 210.3 162 69.1
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 1.4e-52 209.9 166 67.5
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 1.4e-52 209.9 166 67.5
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 1.4e-52 209.9 162 69.1
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 1.9e-52 209.5 166 67.5
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 1.9e-52 209.5 165 67.9
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 1.9e-52 209.5 166 67.5
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 1.9e-52 209.5 166 67.5
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 1.9e-52 209.5 165 67.9
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 2.5e-52 209.1 159 71.7
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.5e-52 209.1 162 69.1
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 3.2e-52 208.8 166 66.9
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 4.2e-52 208.4 165 67.3
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 4.2e-52 208.4 165 67.3
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 4.2e-52 208.4 165 69.1
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 4.2e-52 208.4 165 69.1
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 5.5e-52 208.0 164 67.1
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 5.5e-52 208.0 166 67.5
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 5.5e-52 208.0 166 67.5
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 9.3e-52 207.2 161 68.9
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 9.3e-52 207.2 163 66.9
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 1.2e-51 206.8 166 67.5
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 1.6e-51 206.5 138 79.0
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 2.1e-51 206.1 166 67.5
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 2.7e-51 205.7 155 71.6
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 4.6e-51 204.9 164 69.5
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 4.6e-51 204.9 166 68.1
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 4.6e-51 204.9 166 68.1
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 4.6e-51 204.9 157 70.7
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 4.6e-51 204.9 131 76.3
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 4.6e-51 204.9 134 75.4
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 6.1e-51 204.5 167 68.3
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 7.9e-51 204.1 163 66.3
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.3e-50 203.4 164 67.7
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.8e-50 203.0 162 69.8
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 3.0e-50 202.2 162 67.9
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 3.9e-50 201.8 145 74.5
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 6.7e-50 201.1 171 66.1
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 6.7e-50 201.1 142 75.4
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 8.7e-50 200.7 144 75.0
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 1.1e-49 200.3 165 66.1
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 1.1e-49 200.3 136 75.7
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.5e-49 199.9 162 67.9
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.9e-49 199.5 142 74.6
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 2.5e-49 199.1 138 73.9
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.3e-49 198.7 138 76.1
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 3.3e-49 198.7 138 74.6
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 4.3e-49 198.4 132 77.3
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 4.3e-49 198.4 137 74.5
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 5.7e-49 198.0 137 74.5
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 5.7e-49 198.0 133 76.7
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 9.7e-49 197.2 165 69.1
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 1.3e-48 196.8 137 75.2
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 2.2e-48 196.1 169 65.7
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 3.7e-48 195.3 160 66.2
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 1.4e-47 193.4 127 78.0
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 1.8e-47 193.0 164 65.9
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.8e-47 193.0 165 63.0
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 2.4e-47 192.6 168 63.1
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 3.1e-47 192.2 102 92.2
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 3.1e-47 192.2 137 74.5
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 4.1e-47 191.8 168 62.5
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 6.9e-47 191.0 153 66.7
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 6.9e-47 191.0 124 79.0
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 1.2e-46 190.3 100 91.0
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 1.2e-46 190.3 100 91.0
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 1.2e-46 190.3 140 72.1
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 1.5e-46 189.9 165 66.1
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 1.3e-45 186.8 102 89.2
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 1.7e-45 186.4 157 65.6
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 3.8e-45 185.3 164 61.6
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 1.4e-44 183.3 136 67.6
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 7.2e-44 181.0 106 85.8
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 1.6e-43 179.9 148 66.2
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 1.0e-42 177.2 136 65.4
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 2.8e-40 169.1 163 58.3
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 8.2e-40 167.5 162 59.3
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 1.4e-39 166.8 133 65.4
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.1e-39 165.6 130 67.7
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 2.6e-33 146.0 165 48.5
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 9.7e-33 144.1 165 50.3
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 1.1e-31 140.6 97 67.0
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 2.6e-30 136.0 96 67.7
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 1.3e-29 133.7 165 51.5
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 2.2e-29 132.9 160 46.2
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 1.0e-26 124.0 162 45.7
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 4.8e-24 115.2 72 76.4
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 1.4e-18 97.1 52 90.4
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 5.2e-18 95.1 89 55.1
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 1.5e-17 93.6 50 90.0
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 1.5e-17 93.6 50 90.0
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 1.5e-17 93.6 105 49.5
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 4.8e-16 88.6 86 54.7
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 2.9e-13 79.3 120 40.8


User provided reference genes

Program Settings