Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G003200 Phaseolus vulgaris HOM05D007407 ORTHO05D009298 1.9e-71 272.3 133 100.0
Glyma.04G111400 Glycine max HOM05D007407 ORTHO05D009298 6.0e-65 250.8 133 91.0
Lj3g0017118 Lotus japonicus HOM05D007407 ORTHO05D009298 6.7e-64 247.3 133 88.7
TPR.G5138 Trifolium pratense HOM05D007407 ORTHO05D009298 1.1e-61 240.0 133 86.5
Psat5g233480 Pisum sativum HOM05D007407 ORTHO05D009298 1.8e-61 239.2 133 86.5
Glyma.06G322800 Glycine max HOM05D007407 ORTHO05D009298 1.4e-58 229.6 196 62.8
Medtr0393s0040 Medicago truncatula HOM05D007407 ORTHO05D009298 4.2e-58 228.0 128 83.6
CsaV3_4G000500 Cucumis sativus L. HOM05D007407 ORTHO05D009298 5.1e-56 221.1 133 80.5
Medtr3g010320 Medicago truncatula HOM05D007407 ORTHO05D009298 1.1e-55 219.9 133 82.7
Gohir.A03G184200 Gossypium hirsutum HOM05D007407 ORTHO05D009298 2.0e-55 219.2 133 78.2
Gohir.D02G205700 Gossypium hirsutum HOM05D007407 ORTHO05D009298 2.0e-55 219.2 133 78.2
Gorai.005G233100 Gossypium raimondii HOM05D007407 ORTHO05D009298 2.0e-55 219.2 133 78.2
QL11p032060 Quercus lobata HOM05D007407 ORTHO05D009298 2.0e-55 219.2 132 79.5
CiPaw.05G014900 Carya illinoinensis HOM05D007407 ORTHO05D009298 2.5e-55 218.8 133 77.4
GSVIVG01037877001 Vitis vinifera HOM05D007407 ORTHO05D009298 4.3e-55 218.0 133 76.7
Duzib052G0893 Durio zibethinus HOM05D007407 ORTHO05D009298 1.3e-54 216.5 133 77.4
arahy.Tifrunner.gnm1.ann1.2Y2YM1 Arachis hypogaea HOM05D007407 ORTHO05D009298 2.2e-54 215.7 133 77.4
AUR62008735 Chenopodium quinoa HOM05D007407 ORTHO05D009298 2.2e-54 215.7 133 75.9
ClCG10G010580 Citrullus lanatus HOM05D007407 ORTHO05D009298 3.7e-54 214.9 133 78.2
arahy.Tifrunner.gnm1.ann1.D6X9Y4 Arachis hypogaea HOM05D007407 ORTHO05D009298 4.8e-54 214.5 133 77.4
Thecc.02G113100 Theobroma cacao HOM05D007407 ORTHO05D009298 4.8e-54 214.5 133 76.7
MSTRG.27752 Avicennia marina HOM05D007407 ORTHO05D009298 6.3e-54 214.2 133 75.9
Hma1.2p1_1023F.1_g248940 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 6.3e-54 214.2 131 77.9
Aqoxy6G02771 Aquilegia oxysepala HOM05D007407 ORTHO05D009298 8.2e-54 213.8 133 76.7
Sed0024111 Sechium edule HOM05D007407 ORTHO05D009298 8.2e-54 213.8 133 78.9
Ciclev10029563m.g Citrus clementina HOM05D007407 ORTHO05D009298 5.3e-53 211.1 133 75.2
Cc02_g19580 Coffea canephora HOM05D007407 ORTHO05D009298 5.3e-53 211.1 133 77.4
SalBow3G4546 Salvia bowleyana HOM05D007407 ORTHO05D009298 9.1e-53 210.3 133 75.2
Sabra09G0070800 Salix brachista HOM05D007407 ORTHO05D009298 1.2e-52 209.9 133 74.4
TAR628G1347 Trochodendron aralioides HOM05D007407 ORTHO05D009298 1.2e-52 209.9 133 74.4
Potri.009G091800 Populus trichocarpa HOM05D007407 ORTHO05D009298 1.5e-52 209.5 133 74.4
MD10G1101800 Malus domestica HOM05D007407 ORTHO05D009298 4.5e-52 208.0 132 75.0
Atru.chr5.2418 Acer truncatum HOM05D007407 ORTHO05D009298 1.0e-51 206.8 133 74.4
RhsimUnG0126400 Rhododendron simsii HOM05D007407 ORTHO05D009298 1.3e-51 206.5 132 74.2
CAN.G13.9 Capsicum annuum HOM05D007407 ORTHO05D009298 1.7e-51 206.1 133 71.4
RcHm_v2.0_Chr6g0254151 Rosa chinensis HOM05D007407 ORTHO05D009298 1.7e-51 206.1 133 75.2
Lalb_Chr18g0048491 Lupinus albus HOM05D007407 ORTHO05D009298 2.2e-51 205.7 133 72.9
Oeu044262.1 Olea europaea HOM05D007407 ORTHO05D009298 2.2e-51 205.7 133 72.9
VMungo1080G0753 Vigna mungo HOM05D007407 ORTHO05D009298 2.2e-51 205.7 106 93.4
CANSAT25G3533 Cannabis sativa HOM05D007407 ORTHO05D009298 2.9e-51 205.3 133 74.4
Nn1g04637 Nelumbo nucifera HOM05D007407 ORTHO05D009298 3.8e-51 204.9 133 73.7
EL10Ac6g13315 Beta vulgaris HOM05D007407 ORTHO05D009298 8.5e-51 203.8 133 72.2
Actinidia34378 Actinidia chinensis HOM05D007407 ORTHO05D009298 1.1e-50 203.4 132 72.0
CANSAT25G2132 Cannabis sativa HOM05D007407 ORTHO05D009298 1.9e-50 202.6 133 73.7
Cpa.g.c35560 Carica papaya HOM05D007407 ORTHO05D009298 3.2e-50 201.8 140 72.9
Dinv42215 Davidia involucrata HOM05D007407 ORTHO05D009298 4.2e-50 201.4 134 72.4
Sopen11g019840 Solanum pennellii HOM05D007407 ORTHO05D009298 5.5e-50 201.1 133 69.9
Sc18g0003630 Simmondsia chinensis HOM05D007407 ORTHO05D009298 3.6e-49 198.4 133 71.4
FAN27G0322 Fragaria x ananassa HOM05D007407 ORTHO05D009298 4.7e-49 198.0 133 71.4
Migut.I00274 Erythranthe guttata HOM05D007407 ORTHO05D009298 7.9e-49 197.2 133 70.7
FvH4_2g04570 Fragaria vesca HOM05D007407 ORTHO05D009298 7.9e-49 197.2 133 70.7
HanXRQChr16g0509111 Helianthus annuus HOM05D007407 ORTHO05D009298 7.9e-49 197.2 130 72.3
Peaxi162Scf00152g00338 Petunia axillaris HOM05D007407 ORTHO05D009298 1.8e-48 196.1 133 69.9
FAN15G3071 Fragaria x ananassa HOM05D007407 ORTHO05D009298 3.0e-48 195.3 133 71.4
TWI59G1341 Tripterygium wilfordii HOM05D007407 ORTHO05D009298 2.0e-47 192.6 139 71.2
Thhalv10026553m.g Eutrema salsugineum HOM05D007407 ORTHO05D009298 2.6e-47 192.2 133 66.9
BraA01t00434Z Brassica rapa HOM05D007407 ORTHO05D009298 3.3e-47 191.8 133 66.2
Sp7g31660 Schrenkiella parvula HOM05D007407 ORTHO05D009298 7.4e-47 190.7 133 66.2
CARHR242020 Cardamine hirsuta HOM05D007407 ORTHO05D009298 9.7e-47 190.3 133 66.2
Carub.0007s0650 Capsella rubella HOM05D007407 ORTHO05D009298 1.7e-46 189.5 133 65.4
Aa31sc211G10 Aethionema arabicum HOM05D007407 ORTHO05D009298 4.8e-46 188.0 133 66.2
AL7G17500 Arabidopsis lyrata HOM05D007407 ORTHO05D009298 4.8e-46 188.0 133 65.4
Rhsim11G0155200 Rhododendron simsii HOM05D007407 ORTHO05D009298 2.4e-45 185.7 113 78.8
AT4G33925 Arabidopsis thaliana HOM05D007407 ORTHO05D009298 1.2e-44 183.3 133 63.9
Eucgr.I01082 Eucalyptus grandis HOM05D007407 ORTHO05D009298 2.6e-44 182.2 116 74.1
SGA_v2.0_scaffold13G06621 Striga asiatica HOM05D007407 ORTHO05D009298 3.5e-44 181.8 176 54.0
Manes.07G063400 Manihot esculenta HOM05D007407 ORTHO05D009298 4.5e-44 181.4 181 54.1
Nitab4.5_0000088g0130 Nicotiana tabacum HOM05D007407 ORTHO05D009298 5.0e-43 177.9 113 72.6
C01p04860 Brassica napus HOM05D007407 ORTHO05D009298 6.5e-43 177.6 137 62.0
DCAR_001669 Daucus carota HOM05D007407 ORTHO05D009298 6.5e-43 177.6 133 61.7
Lsat_1_v5_gn_7_86121 Lactuca sativa HOM05D007407 ORTHO05D009298 2.5e-42 175.6 114 71.9
vmacro01981 Vaccinium macrocarpon HOM05D007407 ORTHO05D009298 4.2e-42 174.9 148 63.5
Hund12642 Selenicereus undatus HOM05D007407 ORTHO05D009298 1.6e-41 172.9 100 81.0
Duzib132G0979 Durio zibethinus HOM05D007407 ORTHO05D009298 6.7e-40 167.5 131 61.8
THA.LOC104807229 Tarenaya hassleriana HOM05D007407 ORTHO05D009298 3.3e-39 165.2 106 73.6
BolC1t00470H Brassica oleracea HOM05D007407 ORTHO05D009298 5.7e-39 164.5 106 69.8
HPP92_010144 Vanilla planifolia HOM05D007407 ORTHO05D009298 4.8e-38 161.4 132 57.6
Zm00001eb326460 Zea mays HOM05D007407 ORTHO05D009298 1.1e-37 160.2 128 58.6
Solyc11g044330.3 Solanum lycopersicum HOM05D007407 ORTHO05D009298 2.6e-36 155.6 98 71.4
SEGI_09286 Sequoiadendron giganteum HOM05D007407 ORTHO05D009298 4.5e-36 154.8 121 57.0
ECA236G1324 Erigeron canadensis HOM05D007407 ORTHO05D009298 7.7e-36 154.1 98 73.5
SHI05205 Sapria himalayana HOM05D007407 ORTHO05D009298 1.7e-35 152.9 103 68.9
MD05G1094600 Malus domestica HOM05D007407 ORTHO05D009298 2.5e-34 149.1 100 68.0
PGSC0003DMG400023130 Solanum tuberosum HOM05D007407 ORTHO05D009298 3.2e-34 148.7 92 72.8
Nitab4.5_0000700g0060 Nicotiana tabacum HOM05D007407 ORTHO05D009298 4.2e-34 148.3 105 66.7
Pp3c22_18210 Physcomitrium patens HOM05D007407 ORTHO05D009298 1.2e-28 130.2 122 53.3
Mapoly0083s0061 Marchantia polymorpha HOM05D007407 ORTHO05D009298 1.6e-28 129.8 109 51.4
Hma1.2p1_1023F.1_g248930 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 1.7e-27 126.3 133 54.9
Prupe.8G139500 Prunus persica HOM05D007407 ORTHO05D009298 1.1e-26 123.6 133 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2221 Anthoceros agrestis HOM05D007407 ORTHO05D009298 1.2e-23 113.6 111 50.5
Manes.07G065401 Manihot esculenta HOM05D007407 ORTHO05D009298 1.7e-22 109.8 70 74.3
CBR_g6331 Chara braunii HOM05D007407 ORTHO05D009298 3.1e-21 105.5 111 47.7
SMO330G0043 Selaginella moellendorffii HOM05D007407 ORTHO05D009298 1.7e-19 99.8 102 49.0
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.1e-18 97.1 67 68.7
Cre16.g668000 Chlamydomonas reinhardtii HOM05D007407 ORTHO05D009298 3.3e-18 95.5 109 45.9
MCO15G608 Micromonas commoda HOM05D007407 ORTHO05D009298 7.2e-18 94.4 130 39.2
MD00G1205200 Malus domestica HOM05D007407 ORTHO05D009298 2.3e-16 89.4 63 66.7
Medtr8g072380 Medicago truncatula HOM05D007407 ORTHO05D009298 1.1e-13 80.5 68 61.8
Medtr2g093710 Medicago truncatula HOM05D007407 ORTHO05D009298 2.7e-12 75.9 89 47.2
unitig_747.g21223 Utricularia gibba HOM05D007407 ORTHO05D009298 3.3e-10 68.9 46 65.2
CBR_g37936 Chara braunii HOM05D019869 ORTHO05D028728 8.0e-09 64.3 73 42.5
unitig_747.g21224 Utricularia gibba HOM05D007407 ORTHO05D009298 2.6e-07 59.3 38 65.8
SEGI_10413 Sequoiadendron giganteum HOM05D007407 ORTHO05D009298 5.8e-07 58.2 34 64.7
COL.COLO4_30985 Corchorus olitorius HOM05D001363 ORTHO05D006255 7.5e-07 57.8 56 55.4


User provided reference genes

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