Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 6.5e-110 401.0 239 100.0
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 4.7e-92 341.7 247 85.0
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 4.3e-61 238.8 240 60.4
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.9e-53 213.4 261 60.9
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 7.6e-50 201.4 257 52.1
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 7.8e-47 191.4 256 50.4
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.0e-46 191.0 250 49.6
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.4e-43 180.6 251 49.4
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 2.4e-43 179.9 262 47.3
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.4e-35 154.1 251 44.2
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 4.0e-35 152.5 250 44.0
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 1.2e-34 151.0 289 40.1
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 5.5e-24 115.5 154 48.7
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.6e-23 114.0 116 56.0
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 2.1e-23 113.6 136 50.0
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.0e-22 111.3 133 51.1
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 1.0e-22 111.3 133 51.1
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.3e-22 110.9 140 49.3
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.3e-22 110.2 133 51.1
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.0e-22 109.8 165 46.7
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 3.0e-22 109.8 115 53.0
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 3.9e-22 109.4 138 50.7
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 5.1e-22 109.0 116 52.6
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 5.1e-22 109.0 133 49.6
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 5.1e-22 109.0 158 49.4
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 8.7e-22 108.2 140 49.3
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 8.7e-22 108.2 162 48.8
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.1e-21 107.8 125 49.6
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.5e-21 107.5 132 51.5
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.5e-21 107.5 115 53.0
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.5e-21 107.5 165 47.3
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.5e-21 106.7 165 47.3
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.3e-21 106.3 127 48.8
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 3.3e-21 106.3 135 49.6
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.3e-21 106.3 135 49.6
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 3.3e-21 106.3 121 52.1
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 4.3e-21 105.9 165 47.3
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 4.3e-21 105.9 139 51.8
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 4.3e-21 105.9 124 51.6
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 5.6e-21 105.5 130 50.8
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 7.4e-21 105.1 127 48.0
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 7.4e-21 105.1 127 49.6
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.6e-20 104.0 112 56.2
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.6e-20 104.0 112 56.2
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.6e-20 104.0 155 46.5
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.6e-20 104.0 174 42.5
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.1e-20 103.6 127 47.2
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 2.1e-20 103.6 113 52.2
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.1e-20 103.6 124 50.8
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.1e-20 103.6 153 45.8
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.1e-20 103.6 123 49.6
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 2.8e-20 103.2 124 50.0
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.7e-20 102.8 124 50.0
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 4.8e-20 102.4 118 54.2
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 4.8e-20 102.4 162 47.5
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.8e-20 102.4 135 48.1
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 6.2e-20 102.1 135 48.9
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 6.2e-20 102.1 149 45.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 6.2e-20 102.1 175 41.1
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.4e-19 100.9 155 45.2
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.4e-19 100.9 132 47.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.8e-19 100.5 162 46.3
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.8e-19 100.5 122 49.2
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.0e-19 99.4 118 47.5
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.0e-19 99.4 130 45.4
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 4.0e-19 99.4 121 52.1
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 5.3e-19 99.0 131 44.3
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 5.3e-19 99.0 136 47.8
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 6.9e-19 98.6 166 41.0
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 6.9e-19 98.6 125 47.2
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 9.0e-19 98.2 116 50.9
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 9.0e-19 98.2 117 50.4
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.2e-18 97.8 118 46.6
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.2e-18 97.8 140 45.7
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.2e-18 97.8 124 48.4
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.5e-18 97.4 160 41.2
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.5e-18 97.4 149 44.3
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 2.0e-18 97.1 121 47.1
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 2.0e-18 97.1 170 42.9
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.0e-18 97.1 141 44.7
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.4e-18 96.3 174 42.0
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 4.5e-18 95.9 108 50.9
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 5.8e-18 95.5 284 32.0
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 5.8e-18 95.5 146 46.6
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.3e-17 94.4 156 42.9
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.7e-17 94.0 148 46.6
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.9e-17 93.2 129 48.1
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 2.9e-17 93.2 126 46.0
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 3.8e-17 92.8 116 41.4
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.9e-17 92.4 156 41.7
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 4.9e-17 92.4 125 46.4
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 6.5e-17 92.0 130 46.2
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 8.4e-17 91.7 137 46.0
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.1e-16 91.3 114 45.6
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.1e-16 91.3 191 38.7
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.4e-16 90.9 156 41.7
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.2e-16 89.4 74 62.2
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 4.2e-16 89.4 281 30.2
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.2e-16 89.4 118 44.9
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 9.3e-16 88.2 154 36.4
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.2e-15 87.8 138 39.9
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.6e-15 87.4 118 47.5
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.1e-15 87.0 119 45.4
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.5e-15 86.3 115 43.5
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 3.5e-15 86.3 160 40.0
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 6.0e-15 85.5 147 39.5
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 6.0e-15 85.5 152 37.5
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 7.9e-15 85.1 160 36.2
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.0e-14 84.7 138 39.1
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.3e-14 84.3 117 42.7
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.3e-14 83.6 118 45.8
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 2.3e-14 83.6 104 48.1
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.0e-14 83.2 128 41.4
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 3.0e-14 83.2 74 58.1
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 3.9e-14 82.8 103 47.6
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 5.1e-14 82.4 116 39.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 6.7e-14 82.0 191 35.1
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 8.7e-14 81.6 119 42.0
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 8.7e-14 81.6 151 38.4
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 8.7e-14 81.6 148 38.5
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 8.7e-14 81.6 106 43.4
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 8.7e-14 81.6 141 39.0
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.1e-13 81.3 106 43.4
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.5e-13 80.9 142 38.0
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.5e-13 80.9 155 37.4
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.3e-13 79.7 161 39.1
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 7.4e-13 78.6 139 39.6
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 7.4e-13 78.6 151 36.4
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 7.4e-13 78.6 151 36.4
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.4e-13 78.6 118 39.8
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 9.7e-13 78.2 150 37.3
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 9.7e-13 78.2 150 37.3
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 9.7e-13 78.2 125 36.8
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.6e-12 77.4 139 38.1
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 1.6e-12 77.4 117 41.9
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 2.8e-12 76.6 146 38.4
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 4.8e-12 75.9 145 37.2
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 4.8e-12 75.9 145 37.2
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 6.3e-12 75.5 121 45.5
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 6.3e-12 75.5 121 45.5
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.1e-11 74.7 116 44.0
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.1e-11 74.7 165 37.0
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.4e-11 73.6 114 40.4
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 4.1e-11 72.8 138 41.3
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 5.3e-11 72.4 138 41.3
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 5.3e-11 72.4 138 41.3
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 6.9e-11 72.0 88 44.3
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 9.0e-11 71.6 133 33.1
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.2e-10 71.2 146 34.9
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.0e-10 70.5 207 29.5
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 2.6e-10 70.1 196 32.7
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 3.8e-09 66.2 193 32.1
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 3.8e-09 66.2 193 32.1
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 3.8e-09 66.2 193 32.1
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 5.0e-09 65.9 144 37.5
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 3.2e-08 63.2 134 31.3
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.2e-08 62.8 118 34.7
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 4.2e-08 62.8 170 34.7
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 3.6e-07 59.7 148 33.1
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.4e-06 57.8 94 37.2
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 6.7e-06 55.5 85 43.5
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 6.7e-06 55.5 85 43.5


User provided reference genes

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