Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.2e-104 383.3 197 100.0
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 4.4e-80 301.6 179 89.9
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 9.9e-80 300.4 179 84.4
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 1.4e-78 296.6 170 87.6
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 5.4e-78 294.7 180 81.7
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 5.4e-78 294.7 180 82.8
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 7.1e-78 294.3 176 84.1
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 3.0e-76 288.9 179 80.4
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 3.0e-76 288.9 183 77.6
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 6.6e-76 287.7 179 79.9
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 8.9e-73 277.3 175 78.3
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 4.9e-71 271.6 182 74.7
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 8.4e-71 270.8 173 78.6
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.4e-70 270.0 176 76.1
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 2.4e-70 269.2 187 73.3
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 2.4e-70 269.2 171 79.5
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 4.6e-69 265.0 176 75.0
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 7.8e-69 264.2 169 77.5
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.0e-68 263.8 179 72.1
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.3e-68 263.5 175 72.6
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 1.7e-68 263.1 169 76.9
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 2.3e-68 262.7 174 75.9
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 6.6e-68 261.2 179 73.7
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 6.6e-68 261.2 174 74.1
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 8.7e-68 260.8 169 76.3
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 1.5e-67 260.0 179 70.4
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 1.9e-67 259.6 179 73.2
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 4.3e-67 258.5 174 72.4
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 4.3e-67 258.5 174 74.7
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 4.3e-67 258.5 175 73.7
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 5.6e-67 258.1 173 75.1
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 5.6e-67 258.1 174 74.1
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 9.6e-67 257.3 173 72.8
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 2.4e-65 252.7 179 72.1
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 3.1e-65 252.3 179 72.1
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 3.1e-65 252.3 179 72.1
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 3.1e-65 252.3 180 72.8
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 4.0e-65 251.9 179 69.8
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 4.0e-65 251.9 166 76.5
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 4.0e-65 251.9 179 72.1
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 9.0e-65 250.8 157 81.5
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 9.0e-65 250.8 180 71.7
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 9.0e-65 250.8 180 71.7
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 1.2e-64 250.4 175 70.9
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 1.5e-64 250.0 180 71.7
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 1.5e-64 250.0 179 71.5
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.5e-64 250.0 168 75.6
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.0e-64 249.6 179 70.4
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 3.4e-64 248.8 169 72.8
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 3.4e-64 248.8 169 72.8
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 9.9e-64 247.3 174 73.0
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.3e-63 246.9 169 74.0
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 1.7e-63 246.5 173 69.9
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 1.7e-63 246.5 174 69.5
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 2.9e-63 245.7 169 72.2
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 2.9e-63 245.7 169 72.2
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 2.9e-63 245.7 170 71.8
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.9e-63 245.7 173 74.0
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 4.9e-63 245.0 193 65.8
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 6.4e-63 244.6 179 69.8
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.1e-62 243.8 187 68.4
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.1e-62 243.8 161 75.2
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.9e-62 243.0 171 71.3
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.9e-62 243.0 171 71.3
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.9e-62 243.0 171 71.3
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.4e-62 242.7 180 69.4
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 3.2e-62 242.3 169 72.8
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 3.2e-62 242.3 159 74.8
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 3.2e-62 242.3 175 69.7
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 4.2e-62 241.9 175 72.6
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 4.2e-62 241.9 156 77.6
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 4.2e-62 241.9 171 69.6
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 5.4e-62 241.5 169 71.0
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 7.1e-62 241.1 159 75.5
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 9.3e-62 240.7 179 68.7
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.2e-61 240.4 173 69.4
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 1.2e-61 240.4 176 69.3
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 1.6e-61 240.0 168 70.2
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 3.5e-61 238.8 165 72.7
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 7.8e-61 237.7 203 62.1
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.0e-60 237.3 179 68.7
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.7e-60 236.5 169 71.0
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 1.7e-60 236.5 166 71.1
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 2.3e-60 236.1 169 71.0
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 2.3e-60 236.1 171 69.6
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.9e-60 235.3 168 71.4
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 6.6e-60 234.6 179 67.6
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 6.6e-60 234.6 175 68.6
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 8.7e-60 234.2 174 67.8
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.5e-59 233.4 170 69.4
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.5e-59 233.4 175 67.4
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 1.9e-59 233.0 169 68.6
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.9e-59 233.0 183 66.1
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.3e-59 232.3 180 66.7
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 4.3e-59 231.9 175 67.4
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 5.6e-59 231.5 178 63.5
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 5.6e-59 231.5 186 64.5
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 5.6e-59 231.5 180 68.3
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 7.3e-59 231.1 168 70.8
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 7.3e-59 231.1 166 65.7
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 7.3e-59 231.1 172 68.0
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 1.3e-58 230.3 174 67.2
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.3e-58 230.3 179 65.9
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 3.6e-58 228.8 193 64.2
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 4.8e-58 228.4 163 70.6
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 4.8e-58 228.4 171 67.3
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 6.2e-58 228.0 179 62.6
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.8e-57 226.5 202 60.9
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 5.3e-57 224.9 161 72.0
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 9.0e-57 224.2 173 61.8
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.6e-56 222.6 155 72.9
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 7.6e-56 221.1 198 60.6
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 9.9e-56 220.7 169 66.9
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.7e-55 219.9 162 68.5
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.7e-55 219.9 186 61.8
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.7e-55 219.9 217 56.2
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.9e-55 219.2 167 68.3
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.9e-55 218.4 153 70.6
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 4.9e-55 218.4 153 70.6
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 6.4e-55 218.0 153 69.9
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 1.1e-54 217.2 144 75.7
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.4e-54 216.1 191 62.3
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 3.2e-54 215.7 197 60.4
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 3.2e-54 215.7 166 60.8
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 2.7e-53 212.6 177 63.3
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 3.5e-53 212.2 166 60.2
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 7.9e-53 211.1 177 61.6
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 3.9e-52 208.8 154 70.8
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 9.6e-51 204.1 163 67.5
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 2.1e-50 203.0 130 76.2
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 2.1e-50 203.0 130 76.9
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 2.8e-50 202.6 126 75.4
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.1e-49 200.7 130 76.2
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 1.1e-49 200.7 129 77.5
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 1.1e-49 200.7 130 77.7
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.8e-49 199.9 130 77.7
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 9.0e-49 197.6 124 77.4
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.9e-47 192.6 131 73.3
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-45 187.2 153 67.3
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.2e-45 187.2 122 77.9
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 3.9e-44 182.2 130 73.1
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.8e-42 176.0 124 67.7
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 1.4e-41 173.7 140 62.1
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.8e-41 173.3 151 52.3
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 3.1e-41 172.6 130 66.9
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 7.6e-40 167.9 162 53.1
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.2e-39 166.4 140 57.9
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 6.5e-39 164.9 142 60.6
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.4e-38 163.7 143 57.3
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 3.0e-36 156.0 155 49.7
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.3e-34 150.6 151 48.3
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.4e-33 147.1 111 68.5
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 4.1e-33 145.6 164 47.6
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 1.5e-32 143.7 85 81.2
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.9e-28 129.0 109 60.6
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.5e-27 127.1 129 55.8
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 4.5e-24 115.5 163 43.6
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 4.7e-21 105.5 90 62.2
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.6e-13 80.5 78 48.7
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 4.4e-11 72.4 44 79.5
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 1.8e-09 67.0 46 76.1
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 1.8e-09 67.0 46 76.1
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 3.1e-09 66.2 50 56.0
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 1.2e-08 64.3 47 72.3
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 2.0e-08 63.5 46 71.7


User provided reference genes

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