Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 0.0e+00 1119.4 564 100.0
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 2.9e-294 1014.6 565 91.0
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 1.7e-241 839.3 574 79.3
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 1.9e-237 825.9 575 78.4
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 4.6e-231 804.7 586 73.0
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 4.8e-228 794.7 464 86.2
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 6.9e-227 790.8 464 85.8
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.5e-226 789.6 600 71.2
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 1.0e-214 750.4 506 77.9
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.8e-214 749.6 509 75.8
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 4.3e-213 745.0 508 77.2
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 2.2e-212 742.7 452 82.3
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.4e-211 740.0 447 82.6
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 6.9e-211 737.6 618 66.5
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 1.0e-209 733.8 444 82.9
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 1.3e-209 733.4 411 88.6
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 6.5e-209 731.1 409 88.5
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 3.2e-208 728.8 413 85.5
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 5.5e-208 728.0 478 77.0
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 9.3e-208 727.2 514 74.1
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 4.6e-207 724.9 588 68.2
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 1.0e-206 723.8 546 70.7
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.3e-206 723.4 445 82.0
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 2.3e-206 722.6 478 76.6
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 3.0e-206 722.2 444 81.5
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 8.8e-206 720.7 439 82.7
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 1.1e-205 720.3 439 81.3
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 1.5e-205 719.9 444 81.3
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 5.7e-205 718.0 558 69.9
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.2e-204 716.1 549 69.4
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 8.2e-204 714.1 412 85.9
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 1.2e-202 710.3 537 70.6
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.5e-202 709.9 413 83.8
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 4.5e-202 708.4 433 81.5
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 2.9e-201 705.7 532 70.3
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 2.9e-201 705.7 610 64.8
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 2.9e-201 705.7 503 72.0
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 5.0e-201 704.9 572 66.4
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 6.5e-201 704.5 538 69.7
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 7.2e-200 701.0 551 67.2
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.2e-199 700.3 565 67.1
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.7e-199 699.1 538 68.4
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 3.6e-199 698.7 595 63.9
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 7.9e-199 697.6 544 68.2
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 2.3e-198 696.0 449 76.6
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 1.5e-197 693.3 576 66.1
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 2.6e-197 692.6 591 64.3
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 5.7e-197 691.4 467 74.3
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 5.7e-197 691.4 579 65.3
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 5.7e-197 691.4 589 64.7
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 7.4e-197 691.0 446 77.6
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 1.3e-196 690.3 498 70.7
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 1.7e-196 689.9 420 81.7
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 2.8e-196 689.1 610 63.8
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 2.8e-196 689.1 531 69.9
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 4.8e-196 688.3 446 77.6
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 4.8e-196 688.3 445 77.1
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 6.3e-196 688.0 447 77.2
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 1.4e-195 686.8 551 67.0
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 1.4e-195 686.8 597 64.0
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 1.4e-195 686.8 576 64.4
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 1.8e-195 686.4 431 79.6
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 5.3e-195 684.9 610 63.8
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 5.3e-195 684.9 517 69.6
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 6.9e-195 684.5 521 69.5
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.2e-194 683.7 430 79.3
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 1.5e-194 683.3 440 77.0
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 2.0e-194 682.9 443 77.0
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.6e-194 682.6 418 80.1
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.6e-194 682.6 418 80.4
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 3.4e-194 682.2 575 64.3
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 4.5e-194 681.8 511 70.6
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 1.7e-193 679.9 414 80.7
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.2e-193 679.5 418 80.1
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 2.9e-193 679.1 552 65.8
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 1.1e-192 677.2 590 63.9
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 5.5e-192 674.9 595 63.7
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 7.2e-192 674.5 441 76.6
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 9.4e-192 674.1 539 67.2
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.6e-191 673.3 576 64.6
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.6e-191 673.3 462 73.2
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 2.1e-191 672.9 446 76.2
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.0e-190 670.6 580 63.8
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.4e-190 670.2 581 63.7
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 1.8e-190 669.8 442 76.5
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.8e-190 669.8 612 62.1
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.3e-190 669.5 428 78.3
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 6.7e-190 667.9 509 69.9
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 8.8e-190 667.5 417 77.9
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 8.8e-190 667.5 444 75.2
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 8.8e-190 667.5 584 63.7
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 2.6e-189 666.0 431 76.8
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 7.4e-189 664.5 404 80.9
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 9.7e-189 664.1 427 75.9
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 1.7e-188 663.3 530 66.8
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.7e-188 663.3 445 74.6
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 2.2e-188 662.9 540 66.1
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 3.7e-188 662.1 504 67.9
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 3.1e-187 659.1 579 63.0
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 3.1e-187 659.1 447 74.3
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 4.1e-187 658.7 584 63.0
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 5.3e-187 658.3 409 79.7
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 1.2e-186 657.1 531 66.7
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.6e-186 656.8 560 63.4
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 2.6e-186 656.0 530 66.4
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 5.9e-186 654.8 552 65.6
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 7.7e-186 654.4 580 61.2
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 3.8e-185 652.1 579 62.2
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 3.8e-185 652.1 579 62.0
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 1.5e-184 650.2 468 72.0
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 1.5e-184 650.2 468 72.0
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 1.9e-184 649.8 403 76.9
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 2.5e-184 649.4 560 63.2
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 3.2e-184 649.0 538 65.2
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 9.4e-184 647.5 466 72.1
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 9.4e-184 647.5 466 72.1
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 9.4e-184 647.5 466 72.1
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 1.2e-183 647.1 421 77.0
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 2.7e-183 646.0 411 77.6
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.0e-182 644.0 560 61.4
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 1.4e-182 643.7 512 68.0
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.8e-182 643.3 569 62.0
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 1.8e-182 643.3 516 66.3
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 4.0e-182 642.1 548 62.0
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 2.0e-181 639.8 594 60.9
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 5.7e-181 638.3 427 74.7
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 4.8e-180 635.2 408 77.0
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 8.2e-180 634.4 489 67.9
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 5.5e-176 621.7 355 85.1
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 1.2e-175 620.5 419 74.0
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 2.1e-175 619.8 497 64.4
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.4e-171 607.1 363 82.1
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 1.6e-167 593.6 438 68.3
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.7e-164 582.4 414 70.0
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 5.4e-163 578.6 351 81.5
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 3.0e-158 562.8 577 56.8
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 1.2e-149 534.3 500 58.6
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 5.4e-147 525.4 346 72.5
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 6.6e-145 518.5 402 64.2
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 4.3e-144 515.8 422 62.3
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.3e-140 504.2 378 69.3
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 2.1e-135 486.9 377 66.3
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 4.0e-134 482.6 303 74.9
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 3.4e-101 373.2 209 83.7
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 4.8e-95 352.8 197 83.8
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 1.7e-92 344.4 383 49.1
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.8e-86 324.3 200 80.5
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 1.3e-84 318.2 180 82.2
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.4e-78 298.1 159 86.8
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.4e-78 297.4 156 88.5
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.4e-78 297.4 156 88.5
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 5.9e-77 292.7 226 67.3
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.1e-67 261.9 384 43.0
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 2.4e-62 244.2 359 37.9
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.8e-55 220.7 164 68.9
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 1.7e-52 211.5 305 38.7
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.3e-47 195.3 127 78.0
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.6e-45 188.3 265 38.1
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 3.5e-45 187.2 189 55.6
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 4.3e-43 180.3 109 79.8
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.9e-35 154.8 110 66.4
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 7.3e-35 152.9 152 55.9
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 8.0e-34 149.4 88 77.3
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 1.3e-31 142.1 83 77.1
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 4.9e-31 140.2 130 56.9
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 4.9e-31 140.2 217 35.0
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 6.4e-31 139.8 83 75.9
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 7.1e-30 136.3 101 69.3
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 6.4e-23 113.2 120 53.3
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 2.4e-22 111.3 100 61.0
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 9.6e-19 99.4 92 59.8
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 1.1e-14 85.9 175 34.9
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 2.3e-12 78.2 111 44.1
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 2.3e-12 78.2 41 92.7
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 8.1e-10 69.7 65 55.4
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 6.4e-07 60.1 32 81.2


User provided reference genes

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