Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 5.3e-70 267.7 147 100.0
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 8.5e-60 233.8 147 85.0
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 4.2e-59 231.5 147 87.8
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 1.3e-55 219.9 122 88.5
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 1.3e-55 219.9 122 88.5
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 7.2e-51 204.1 123 80.5
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 9.4e-51 203.8 146 74.0
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 1.2e-50 203.4 125 78.4
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 1.6e-50 203.0 145 74.5
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 4.7e-50 201.4 147 72.1
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 6.1e-50 201.1 124 76.6
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 2.3e-49 199.1 147 72.8
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 3.9e-49 198.4 146 71.9
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 9.7e-48 193.7 147 70.1
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 1.3e-47 193.4 146 67.1
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 2.8e-47 192.2 125 74.4
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 3.7e-47 191.8 147 70.1
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 1.1e-46 190.3 149 72.5
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 3.1e-46 188.7 145 71.0
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 9.1e-46 187.2 147 61.9
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 1.5e-45 186.4 126 69.8
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 1.5e-45 186.4 126 72.2
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 2.0e-45 186.0 127 70.1
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 2.6e-45 185.7 126 69.8
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 3.4e-45 185.3 126 71.4
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 4.5e-45 184.9 122 73.8
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 1.0e-44 183.7 148 62.8
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 1.3e-44 183.3 126 69.0
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 2.2e-44 182.6 120 71.7
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 2.2e-44 182.6 120 71.7
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 2.2e-44 182.6 145 69.0
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 2.9e-44 182.2 126 69.8
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 5.0e-44 181.4 126 68.3
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 5.0e-44 181.4 126 69.0
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 8.5e-44 180.6 125 67.2
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 1.1e-43 180.3 118 71.2
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 1.4e-43 179.9 119 69.7
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 1.9e-43 179.5 119 68.9
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 1.9e-43 179.5 119 68.9
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 2.5e-43 179.1 118 71.2
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 4.2e-43 178.3 118 70.3
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 7.2e-43 177.6 126 66.7
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 7.2e-43 177.6 128 67.2
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 7.2e-43 177.6 149 66.4
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 1.2e-42 176.8 126 67.5
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 2.1e-42 176.0 147 63.3
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 2.7e-42 175.6 118 70.3
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 3.6e-42 175.3 118 69.5
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 3.6e-42 175.3 125 66.4
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 4.7e-42 174.9 119 68.1
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 4.7e-42 174.9 105 77.1
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 8.0e-42 174.1 147 63.9
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 8.0e-42 174.1 120 70.8
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.0e-41 173.7 127 64.6
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.0e-41 173.7 127 64.6
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 1.0e-41 173.7 119 68.1
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 1.0e-41 173.7 126 68.3
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 1.8e-41 172.9 126 65.9
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 2.3e-41 172.6 126 65.9
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 3.0e-41 172.2 118 69.5
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 3.9e-41 171.8 118 66.9
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 3.9e-41 171.8 113 71.7
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 3.9e-41 171.8 124 66.9
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 6.7e-41 171.0 147 66.0
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 6.7e-41 171.0 127 65.4
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 8.8e-41 170.6 143 63.6
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 8.8e-41 170.6 149 65.1
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 8.8e-41 170.6 115 70.4
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.5e-40 169.9 125 64.8
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 3.3e-40 168.7 147 58.5
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 3.3e-40 168.7 125 64.8
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 5.7e-40 167.9 112 69.6
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 5.7e-40 167.9 129 64.3
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 5.7e-40 167.9 127 66.1
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 1.7e-39 166.4 147 63.3
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 2.8e-39 165.6 126 65.9
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 3.7e-39 165.2 109 69.7
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 1.1e-38 163.7 108 71.3
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 1.8e-38 162.9 125 64.8
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 1.8e-38 162.9 125 64.8
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 2.4e-38 162.5 108 70.4
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 3.1e-38 162.2 124 63.7
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 3.1e-38 162.2 126 62.7
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 4.1e-38 161.8 126 65.1
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 4.1e-38 161.8 126 65.1
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 4.1e-38 161.8 126 65.1
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 4.1e-38 161.8 126 65.1
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 5.3e-38 161.4 108 69.4
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 5.3e-38 161.4 108 69.4
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 7.0e-38 161.0 124 63.7
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 7.0e-38 161.0 108 69.4
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 7.0e-38 161.0 125 63.2
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 9.1e-38 160.6 141 62.4
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 1.2e-37 160.2 118 66.9
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 2.6e-37 159.1 108 67.6
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 2.6e-37 159.1 100 72.0
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 7.7e-37 157.5 102 71.6
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 3.8e-36 155.2 123 60.2
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 2.5e-35 152.5 173 48.6
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 3.2e-35 152.1 98 75.5
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 7.2e-35 151.0 126 58.7
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 1.2e-34 150.2 107 69.2
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 1.6e-34 149.8 127 56.7
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 2.1e-34 149.4 104 66.3
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 2.1e-34 149.4 104 66.3
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 4.7e-34 148.3 108 65.7
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 6.1e-34 147.9 161 51.6
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 6.1e-34 147.9 123 56.9
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 2.6e-32 142.5 119 58.8
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 1.7e-31 139.8 132 59.8
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 1.7e-31 139.8 118 57.6
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 1.4e-30 136.7 87 71.3
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 4.1e-30 135.2 84 73.8
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 9.1e-30 134.0 125 54.4
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 2.7e-26 122.5 104 58.7
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 3.0e-25 119.0 78 66.7
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 7.5e-24 114.4 101 49.5
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 8.3e-23 110.9 110 46.4
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 1.6e-21 106.7 101 47.5
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 4.5e-21 105.1 68 70.6
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 1.1e-19 100.5 120 44.2
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 2.1e-18 96.3 101 41.6
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 1.2e-16 90.5 61 63.9
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 2.6e-16 89.4 61 60.7
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 3.7e-15 85.5 108 52.8
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 3.7e-15 85.5 61 59.0
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 3.1e-14 82.4 67 64.2
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 3.5e-13 79.0 58 69.0
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 3.5e-13 79.0 49 67.3
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 1.0e-12 77.4 51 70.6
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 3.8e-12 75.5 85 42.4
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 3.3e-11 72.4 57 54.4
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 5.6e-11 71.6 65 56.9
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 1.6e-10 70.1 39 82.1
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 4.0e-09 65.5 53 49.1
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 4.9e-07 58.5 95 29.5
SalBow1G6627 Salvia bowleyana HOM05D005630 ORTHO05D006979 8.3e-07 57.8 36 69.4


User provided reference genes

Program Settings