Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 0.0e+00 1163.3 704 100.0
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 2.5e-295 1018.5 704 89.2
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 7.1e-290 1000.3 703 82.1
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 7.9e-289 996.9 702 82.1
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 2.3e-248 862.4 706 77.6
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 1.4e-240 836.6 708 71.5
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 7.5e-239 830.9 708 73.0
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.8e-237 826.2 708 75.7
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 2.4e-237 825.9 706 73.5
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 9.2e-237 823.9 703 76.0
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 5.9e-236 821.2 698 69.6
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 4.9e-214 748.4 709 64.5
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 1.2e-207 727.2 709 64.2
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.9e-205 719.9 706 65.9
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 4.2e-205 718.8 738 64.1
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 1.0e-203 714.1 713 62.8
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.9e-202 709.9 714 62.3
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 2.5e-202 709.5 712 63.5
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.4e-200 703.7 709 62.2
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 3.1e-200 702.6 715 62.0
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.2e-198 696.4 726 61.3
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.2e-198 696.4 719 62.0
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 4.9e-198 695.3 717 61.5
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.1e-197 694.1 711 60.5
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.6e-196 690.3 711 60.9
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 1.6e-196 690.3 711 61.9
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 2.3e-195 686.4 732 60.0
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 3.0e-195 686.0 718 61.7
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 3.9e-195 685.6 704 60.9
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 5.6e-194 681.8 754 58.1
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 6.2e-193 678.3 713 60.3
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 5.3e-192 675.2 712 60.0
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 9.0e-192 674.5 711 60.3
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 4.9e-190 668.7 713 59.6
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 1.9e-189 666.8 711 60.5
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.4e-189 666.4 719 60.9
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 2.1e-188 663.3 713 59.2
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.5e-188 662.5 710 59.9
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 6.0e-188 661.8 707 59.1
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 6.7e-187 658.3 704 59.4
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 5.6e-186 655.2 592 67.4
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 5.6e-186 655.2 705 58.9
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 5.6e-186 655.2 715 58.5
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 1.6e-185 653.7 708 61.9
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 2.0e-183 646.7 712 57.7
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.6e-183 646.4 713 59.2
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 1.7e-182 643.7 736 56.1
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 7.1e-181 638.3 726 57.7
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 2.7e-180 636.3 608 63.8
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 7.9e-180 634.8 726 57.4
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 8.7e-179 631.3 719 58.0
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 8.7e-179 631.3 731 58.7
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 2.4e-176 623.2 713 56.7
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 6.9e-176 621.7 721 56.4
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 1.2e-175 620.9 714 59.2
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.0e-175 620.2 742 59.2
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 5.8e-175 618.6 735 58.1
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 5.8e-175 618.6 725 55.9
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.1e-173 614.4 771 54.1
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 4.6e-172 609.0 693 56.4
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 2.3e-171 606.7 728 60.9
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.1e-170 604.4 746 54.4
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 1.9e-170 603.6 737 54.8
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 1.3e-169 600.9 747 53.9
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 1.6e-169 600.5 725 59.4
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.6e-169 600.5 722 55.1
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 2.8e-169 599.7 735 54.8
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.8e-169 599.7 722 54.6
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 4.8e-169 599.0 716 60.6
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 8.2e-169 598.2 717 55.5
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 8.2e-169 598.2 654 59.3
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 7.7e-167 591.7 714 56.3
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 1.1e-165 587.8 714 55.6
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.4e-165 587.4 719 54.7
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 4.2e-165 585.9 747 52.5
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 9.4e-165 584.7 710 54.2
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 6.1e-164 582.0 726 56.1
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 6.1e-164 582.0 726 59.1
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.0e-163 581.3 726 59.2
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 6.7e-163 578.6 731 59.5
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 8.8e-163 578.2 721 54.6
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 5.7e-162 575.5 724 54.3
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 2.2e-161 573.5 731 53.8
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.8e-161 572.4 736 58.3
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 1.4e-160 570.9 727 58.9
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 3.1e-160 569.7 705 53.5
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 2.0e-159 567.0 726 53.7
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 1.0e-158 564.7 724 56.9
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 2.2e-158 563.5 714 55.5
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 6.5e-158 562.0 706 56.2
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 2.5e-157 560.1 759 57.0
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.7e-156 556.6 746 52.9
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 2.6e-154 550.1 704 52.8
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 2.2e-153 547.0 633 58.1
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 3.1e-152 543.1 726 51.1
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.9e-150 536.6 469 65.2
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.4e-149 534.3 741 57.1
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 1.2e-148 531.2 720 49.4
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 4.7e-148 529.3 704 51.3
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.5e-146 524.2 804 46.8
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 4.4e-146 522.7 707 49.9
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 1.7e-145 520.8 761 49.1
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 8.2e-145 518.5 776 49.1
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.2e-138 498.0 725 48.7
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 8.3e-137 491.9 380 72.6
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 3.8e-126 456.4 623 52.6
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.8e-124 450.3 665 52.2
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 8.0e-116 422.2 447 59.5
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.3e-102 378.3 533 50.8
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 4.4e-98 363.2 730 40.3
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 6.2e-92 342.8 236 80.5
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.0e-90 337.8 227 79.7
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.3e-86 325.1 499 48.9
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.1e-85 322.0 499 48.7
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 7.6e-82 309.3 209 80.4
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 7.6e-82 309.3 209 80.4
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.9e-81 306.6 229 73.4
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 6.4e-81 306.2 231 75.8
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 2.1e-76 291.2 184 83.2
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.7e-65 255.0 173 79.2
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.5e-63 247.3 431 44.1
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 9.6e-61 239.2 529 38.0
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 5.0e-57 226.9 443 50.8
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 2.3e-54 218.0 432 41.7
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 5.1e-54 216.9 134 83.6
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 5.1e-54 216.9 429 38.7
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.8e-46 191.8 318 47.2
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 4.8e-44 183.7 381 39.9
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 2.5e-40 171.4 202 57.9
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.0e-37 161.8 561 34.0
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 2.3e-30 138.3 94 72.3
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 1.5e-29 135.6 86 87.2
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 3.8e-25 120.9 408 33.8
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 2.5e-24 118.2 210 43.8
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.8e-22 109.8 70 85.7
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.8e-22 109.8 70 85.7
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.8e-22 109.8 70 85.7
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 5.7e-21 107.1 72 80.6
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.0e-19 100.1 70 82.9
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.3e-12 79.3 65 66.2
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 2.2e-12 78.6 242 30.2
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 7.7e-10 70.1 373 27.9
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 9.5e-08 63.2 295 30.2
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 9.5e-08 63.2 195 35.9
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.2e-07 62.8 49 75.5
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.1e-07 62.0 300 30.7
HanXRQChr03g0072061 Helianthus annuus HOM05D004485 ORTHO05D005485 4.0e-06 57.8 40 70.0
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 5.2e-06 57.4 364 25.3


User provided reference genes

Program Settings