Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 2.6e-214 748.4 368 100.0
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 4.6e-179 631.3 370 85.7
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 8.3e-165 583.9 573 58.3
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 2.4e-164 582.4 374 80.7
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 2.8e-152 542.3 381 72.7
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 5.2e-151 538.1 420 69.3
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 9.9e-150 533.9 369 75.3
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 2.5e-137 492.7 393 66.9
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 1.6e-136 490.0 308 77.6
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 3.1e-127 459.1 361 68.7
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 4.0e-127 458.8 421 59.6
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 2.2e-120 436.4 377 61.3
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 2.4e-119 433.0 414 58.5
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 4.1e-119 432.2 378 63.8
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 9.0e-119 431.0 381 60.1
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 4.5e-118 428.7 307 71.3
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 4.2e-116 422.2 375 60.8
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 1.0e-114 417.5 370 59.5
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 1.1e-113 414.1 371 61.2
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 1.9e-113 413.3 356 64.6
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 4.3e-113 412.1 374 60.2
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 1.3e-112 410.6 366 62.8
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.1e-111 407.5 374 60.7
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 4.1e-111 405.6 390 59.2
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 3.4e-110 402.5 381 59.3
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 7.7e-110 401.4 361 60.4
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 1.2e-107 394.0 378 56.1
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 4.7e-107 392.1 391 56.5
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 2.6e-105 386.3 381 59.3
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 7.4e-105 384.8 381 58.3
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 2.2e-104 383.3 380 56.3
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 5.3e-103 378.6 310 64.5
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 9.1e-103 377.9 395 54.9
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 3.4e-102 375.9 375 57.6
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 3.4e-102 375.9 395 54.9
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 8.5e-101 371.3 340 60.6
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 2.5e-100 369.8 381 53.8
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 3.9e-98 362.5 308 64.0
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 6.7e-98 361.7 308 62.7
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 5.7e-97 358.6 362 56.6
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 7.4e-97 358.2 405 52.8
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.4e-95 354.0 374 55.6
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 2.4e-95 353.2 360 55.6
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 3.1e-95 352.8 356 56.7
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 4.1e-95 352.4 361 54.3
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 3.5e-94 349.4 364 56.0
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.2e-93 346.7 319 61.8
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 6.5e-93 345.1 306 63.7
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 5.5e-92 342.0 455 45.9
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.1e-91 340.1 374 54.0
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 4.7e-91 339.0 394 51.5
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 4.4e-89 332.4 374 51.3
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 7.5e-89 331.6 373 53.9
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 2.2e-88 330.1 306 59.8
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 4.8e-88 328.9 319 59.9
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 5.3e-87 325.5 384 50.8
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 9.1e-87 324.7 532 41.4
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 2.0e-86 323.6 518 41.7
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 5.9e-86 322.0 371 52.6
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.0e-85 321.2 392 49.7
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 3.8e-85 319.3 358 53.4
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 3.8e-85 319.3 358 53.4
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 2.5e-84 316.6 419 47.3
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 2.1e-83 313.5 363 54.8
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 6.1e-83 312.0 353 51.6
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 3.0e-82 309.7 366 50.3
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 4.0e-82 309.3 313 57.8
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 1.5e-81 307.4 302 57.0
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 2.0e-81 307.0 392 51.8
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 5.7e-81 305.4 374 49.2
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.1e-79 301.2 375 48.5
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 3.5e-78 296.2 365 49.9
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 9.5e-76 288.1 232 66.8
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 8.9e-74 281.6 452 43.6
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 2.0e-73 280.4 395 45.8
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 1.3e-72 277.7 390 47.9
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 1.1e-71 274.6 296 53.7
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 3.8e-69 266.2 369 47.4
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 6.6e-69 265.4 333 48.0
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.9e-68 263.8 309 48.9
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 5.6e-68 262.3 376 49.5
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 1.2e-65 254.6 373 49.6
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 4.1e-63 246.1 281 48.8
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 9.2e-63 245.0 370 47.8
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 5.0e-61 239.2 449 41.0
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 5.6e-60 235.7 385 43.6
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 2.3e-58 230.3 336 46.4
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 5.8e-57 225.7 308 46.8
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 7.5e-57 225.3 358 46.1
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 3.7e-56 223.0 302 45.7
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 2.4e-55 220.3 385 42.6
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 4.1e-55 219.5 224 58.9
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.2e-51 208.0 391 42.7
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 2.8e-51 206.8 387 41.9
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 8.9e-50 201.8 400 41.0
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 2.6e-49 200.3 394 41.4
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 3.2e-47 193.4 304 44.7
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 1.6e-46 191.0 379 41.2
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 8.6e-45 185.3 391 40.2
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 1.1e-44 184.9 500 34.8
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 1.5e-44 184.5 369 40.7
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 7.3e-44 182.2 375 40.3
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 6.2e-43 179.1 323 44.0
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 6.2e-43 179.1 384 40.6
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 6.8e-42 175.6 186 52.2
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 1.2e-41 174.9 355 40.3
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 3.4e-41 173.3 196 47.4
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.3e-37 161.4 299 40.5
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 8.7e-37 158.7 375 37.9
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 7.3e-36 155.6 236 46.2
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 9.6e-36 155.2 236 46.2
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 4.7e-35 152.9 344 37.5
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 4.4e-33 146.4 331 37.2
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 6.4e-32 142.5 371 37.2
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 7.1e-31 139.0 364 36.8
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 7.1e-31 139.0 364 36.8
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 3.5e-30 136.7 316 39.2
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 4.8e-27 126.3 297 38.4
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 4.9e-24 116.3 310 35.8
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.4e-23 114.8 388 34.0
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 5.4e-23 112.8 382 32.7
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 3.5e-22 110.2 287 35.9
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 1.3e-21 108.2 355 33.8
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 5.1e-21 106.3 380 33.7
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 1.1e-18 98.6 350 33.4
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 1.8e-13 81.3 43 79.1
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 1.6e-11 74.7 316 29.4
Lalb_Chr24g0397411 Lupinus albus HOM05D005514 ORTHO05D006563 5.3e-10 69.7 67 58.2
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 5.3e-10 69.7 68 57.4
Lalb_Chr14g0371631 Lupinus albus HOM05D005514 ORTHO05D006563 9.0e-10 68.9 64 59.4
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 2.0e-09 67.8 162 37.0
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 5.8e-09 66.2 37 73.0
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 1.7e-08 64.7 254 34.3
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 2.2e-08 64.3 71 49.3
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 6.5e-08 62.8 58 60.3
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 2.5e-07 60.8 72 54.2
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 2.7e-06 57.4 78 44.9


User provided reference genes

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