Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 0.0e+00 1557.0 835 100.0
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 0.0e+00 1374.4 837 86.6
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 0.0e+00 1263.4 841 82.3
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 0.0e+00 1230.7 843 80.8
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 6.5e-258 894.4 862 63.8
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 4.0e-247 858.6 857 60.8
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 1.8e-244 849.7 870 60.1
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 1.3e-242 843.6 861 61.8
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 5.6e-241 838.2 854 60.9
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 4.9e-237 825.1 856 59.2
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 1.4e-231 807.0 864 59.5
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 1.2e-214 750.7 873 54.6
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 4.8e-160 569.3 872 46.8
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 4.2e-156 556.2 860 46.6
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 7.7e-150 535.4 852 45.0
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 8.3e-144 515.4 868 44.2
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 4.6e-126 456.4 500 58.2
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 2.3e-122 444.1 860 41.4
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 1.4e-119 434.9 873 39.9
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 2.1e-118 431.0 878 41.2
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 3.6e-115 420.2 842 40.6
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 4.0e-114 416.8 885 37.7
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 2.0e-113 414.5 878 40.1
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 5.4e-111 406.4 876 39.3
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 5.4e-111 406.4 883 37.1
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 5.6e-108 396.4 894 37.1
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 7.3e-108 396.0 902 37.5
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 1.1e-103 382.1 911 35.7
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 1.2e-102 378.6 902 34.9
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.9e-100 371.3 913 34.3
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 3.3e-100 370.5 847 38.1
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 2.4e-98 364.4 894 35.1
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 4.4e-97 360.1 917 35.8
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 5.8e-97 359.8 903 34.6
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 8.4e-96 355.9 877 35.5
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 3.2e-95 354.0 875 35.0
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 1.7e-93 348.2 913 34.7
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 2.3e-93 347.8 928 33.3
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 5.1e-93 346.7 910 34.8
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 3.3e-92 344.0 890 35.1
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 3.6e-91 340.5 889 35.4
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 4.8e-91 340.1 838 36.3
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 1.2e-89 335.5 889 34.6
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 5.4e-87 326.6 915 32.6
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 7.1e-87 326.2 900 32.2
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 4.6e-86 323.6 878 33.6
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.9e-85 320.5 915 32.2
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 1.3e-83 315.5 912 31.1
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 6.9e-82 309.7 914 31.5
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.4e-81 307.4 996 31.2
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 6.0e-78 296.6 720 36.9
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 7.4e-76 289.7 866 31.5
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 4.0e-74 283.9 851 32.4
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 4.0e-74 283.9 903 30.5
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.6e-73 281.2 853 32.4
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 7.6e-73 279.6 599 38.9
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 1.4e-71 275.4 886 33.3
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 4.2e-71 273.9 906 30.8
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.6e-70 270.4 1044 29.4
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 8.7e-69 266.2 1048 29.2
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.5e-68 265.4 977 29.9
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 1.9e-68 265.0 903 29.1
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 1.6e-67 261.9 870 31.0
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 8.5e-64 249.6 857 30.1
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 3.6e-62 244.2 873 30.6
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 1.4e-61 242.3 924 29.2
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 6.7e-61 240.0 870 28.6
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 7.4e-60 236.5 973 27.6
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 3.7e-59 234.2 295 50.8
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 6.9e-58 229.9 956 29.3
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 9.1e-58 229.6 947 30.6
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 4.5e-57 227.3 887 29.2
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 1.3e-56 225.7 898 27.4
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 2.2e-56 224.9 862 29.4
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 7.2e-55 219.9 970 28.1
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 2.7e-54 218.0 890 28.3
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 9.7e-52 209.5 884 28.5
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 2.2e-51 208.4 929 28.1
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 3.7e-51 207.6 839 28.1
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 5.3e-50 203.8 884 27.3
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 1.9e-47 195.3 914 29.3
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.2e-46 192.6 915 29.3
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.6e-46 192.2 891 27.6
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 2.3e-45 188.3 855 27.5
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 2.6e-44 184.9 682 30.1
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 2.2e-43 181.8 891 26.8
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 2.4e-42 178.3 865 26.1
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 4.1e-42 177.6 695 29.2
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 1.2e-41 176.0 845 27.6
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.6e-41 174.9 873 27.4
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 1.7e-40 172.2 916 26.1
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 5.0e-40 170.6 879 26.7
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.9e-39 168.7 903 28.2
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 2.5e-39 168.3 876 25.7
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.6e-38 165.6 592 28.7
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 4.7e-38 164.1 508 32.5
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 2.3e-37 161.8 143 60.1
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 5.2e-37 160.6 862 26.6
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 2.6e-36 158.3 911 26.5
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 3.4e-36 157.9 440 33.9
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 3.7e-35 154.5 860 27.1
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 1.8e-34 152.1 437 33.4
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 4.1e-34 151.0 849 25.3
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 7.7e-33 146.7 860 25.0
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.0e-32 146.4 763 24.6
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 7.2e-31 140.2 755 27.0
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 9.4e-31 139.8 515 30.7
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.6e-30 139.0 149 49.7
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 3.0e-29 134.8 861 27.2
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 3.0e-29 134.8 225 36.9
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 8.8e-29 133.3 857 24.9
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 1.2e-28 132.9 857 24.9
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 4.8e-27 127.5 1072 23.5
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 5.9e-25 120.6 864 25.1
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 5.9e-25 120.6 858 24.2
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 1.3e-24 119.4 864 25.1
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.3e-24 119.4 807 24.5
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 1.7e-24 119.0 857 25.6
Lalb_Chr16g0388151 Lupinus albus HOM05D005593 ORTHO05D006515 1.7e-24 119.0 218 42.2
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 5.0e-24 117.5 273 37.0
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 6.6e-24 117.1 860 25.1
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 6.6e-24 117.1 862 24.9
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 2.5e-23 115.2 292 36.3
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 7.2e-23 113.6 555 28.3
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 9.5e-23 113.2 876 25.5
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 2.8e-22 111.7 185 38.4
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.4e-20 104.4 199 34.7
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 7.3e-15 87.0 422 30.8
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 2.8e-14 85.1 839 22.2
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 4.0e-13 81.3 381 27.8
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 2.0e-12 79.0 225 27.6
Cfa005599 Carpinus fangiana HOM05D005593 ORTHO05D006515 4.4e-12 77.8 55 69.1
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 5.8e-12 77.4 275 29.8
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 7.5e-12 77.0 245 30.6
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 9.8e-12 76.6 885 22.7
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 3.7e-11 74.7 231 32.5
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 8.3e-11 73.6 265 28.7
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 4.1e-10 71.2 885 23.1
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 5.4e-10 70.9 167 29.9
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 1.2e-09 69.7 870 22.9
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 1.6e-09 69.3 248 30.6
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.6e-09 69.3 221 28.5
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 2.7e-09 68.6 248 29.4
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.7e-09 68.6 919 22.1
CDE02G1606 Ceratophyllum demersum HOM05D005593 ORTHO05D006515 4.6e-09 67.8 227 28.2
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 4.6e-09 67.8 843 23.6
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 4.6e-09 67.8 915 22.8
Os01g0228800 Oryza sativa ssp. japonica HOM05D042755 ORTHO05D006515 4.6e-09 67.8 281 29.9
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 6.0e-09 67.4 917 21.7
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 6.0e-09 67.4 214 31.3
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 7.8e-09 67.0 214 31.3
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 7.8e-09 67.0 198 32.3
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 7.8e-09 67.0 931 21.3
HPP92_023926 Vanilla planifolia HOM05D005593 ORTHO05D006515 7.8e-09 67.0 133 36.8
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.3e-08 66.2 836 22.6
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.3e-08 66.2 217 27.6
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 2.3e-08 65.5 854 21.4
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 2.3e-08 65.5 914 20.9
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 2.3e-08 65.5 876 22.6
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 5.0e-08 64.3 266 25.6
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 5.0e-08 64.3 225 28.4
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 5.0e-08 64.3 844 21.4
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 1.1e-07 63.2 199 31.2
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 1.1e-07 63.2 218 28.9
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 1.5e-07 62.8 965 20.9
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.5e-07 62.8 208 28.4
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 1.5e-07 62.8 884 22.2
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 1.9e-07 62.4 208 28.4
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 1.9e-07 62.4 210 26.2
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 1.9e-07 62.4 272 27.2
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 1.9e-07 62.4 194 32.5
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.9e-07 62.4 317 24.6
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.5e-07 62.0 299 26.1
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 2.5e-07 62.0 217 29.0
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 2.5e-07 62.0 802 21.9
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 4.3e-07 61.2 204 30.9
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 1.2e-06 59.7 933 20.9
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 1.6e-06 59.3 210 26.2
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 2.1e-06 58.9 203 30.0
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 2.1e-06 58.9 250 28.8
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 4.7e-06 57.8 242 28.9
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 6.2e-06 57.4 863 22.4
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 6.2e-06 57.4 355 22.5
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 6.2e-06 57.4 870 20.8
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 8.0e-06 57.0 931 21.6


User provided reference genes

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