Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 1.5e-259 899.0 467 100.0
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 3.2e-246 854.7 467 94.6
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 4.4e-227 791.2 468 87.6
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 9.7e-227 790.0 468 87.8
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 2.0e-208 729.2 468 81.2
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 1.4e-204 716.5 472 80.5
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 2.4e-193 679.1 467 77.5
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 1.1e-190 670.2 469 76.8
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 2.1e-189 666.0 475 75.8
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 4.0e-188 661.8 472 75.8
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 2.9e-186 655.6 467 73.9
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 6.4e-186 654.4 471 72.8
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 4.1e-185 651.7 451 74.1
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 5.4e-185 651.4 471 74.5
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 2.3e-183 646.0 468 72.6
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 3.0e-183 645.6 469 73.8
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 1.1e-182 643.7 469 73.6
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 7.3e-182 641.0 464 73.9
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 1.6e-181 639.8 468 72.0
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 2.8e-181 639.0 477 70.9
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 1.4e-180 636.7 469 72.3
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 2.3e-180 636.0 402 77.4
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 1.5e-179 633.3 471 72.0
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 2.0e-179 632.9 468 71.2
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 2.0e-179 632.9 465 72.3
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 5.8e-179 631.3 471 71.1
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 1.3e-178 630.2 476 70.4
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 1.2e-176 623.6 408 75.2
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 4.6e-176 621.7 466 70.8
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 6.0e-176 621.3 481 68.2
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 1.0e-175 620.5 473 70.2
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 1.3e-175 620.2 478 70.3
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 2.3e-175 619.4 400 76.0
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 5.1e-175 618.2 467 70.0
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 8.6e-175 617.5 472 69.7
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 8.6e-175 617.5 472 69.3
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 1.1e-174 617.1 461 70.5
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 1.5e-174 616.7 462 70.8
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 1.5e-174 616.7 456 70.2
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 7.3e-174 614.4 470 68.5
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 6.2e-173 611.3 462 69.9
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 8.1e-173 610.9 375 80.5
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 8.1e-173 610.9 463 69.5
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 1.1e-172 610.5 471 69.4
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 1.1e-172 610.5 469 69.3
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 1.8e-172 609.8 475 68.4
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 3.1e-172 609.0 456 69.7
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 4.0e-172 608.6 473 68.7
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 4.0e-172 608.6 470 68.5
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 5.2e-172 608.2 468 70.1
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 6.8e-172 607.8 503 65.2
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 8.9e-172 607.4 470 68.1
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 1.2e-171 607.1 470 68.3
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 2.6e-171 605.9 436 71.8
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 3.4e-171 605.5 466 69.7
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 4.4e-171 605.1 472 69.7
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 5.8e-171 604.7 467 69.2
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.7e-170 603.2 458 69.0
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 1.7e-170 603.2 468 69.4
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 4.9e-170 601.7 382 78.5
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 1.9e-169 599.7 456 67.8
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 4.2e-169 598.6 410 73.7
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 9.3e-169 597.4 375 78.4
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.6e-168 596.7 462 67.5
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 2.3e-167 592.8 457 67.4
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.1e-166 590.5 462 67.3
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 4.8e-165 585.1 376 76.1
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 2.4e-164 582.8 473 66.6
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 4.0e-164 582.0 407 70.8
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 4.0e-164 582.0 419 69.5
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 2.0e-163 579.7 467 67.0
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 2.6e-163 579.3 394 71.8
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 7.6e-163 577.8 465 65.4
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 3.8e-162 575.5 446 69.1
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 8.4e-162 574.3 460 65.7
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 1.4e-161 573.5 430 67.9
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 3.5e-160 568.9 378 72.8
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 4.6e-160 568.5 449 65.9
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 2.3e-159 566.2 395 71.1
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 3.0e-159 565.8 470 62.8
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 3.0e-159 565.8 471 66.5
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 5.1e-159 565.1 467 64.5
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 1.1e-158 563.9 429 67.6
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.9e-158 563.1 424 68.6
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 9.6e-158 560.8 458 65.9
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 2.8e-157 559.3 450 64.7
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 3.6e-157 558.9 436 65.6
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 8.1e-157 557.8 435 66.2
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 9.0e-156 554.3 465 63.2
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 1.2e-155 553.9 443 65.5
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 1.3e-154 550.4 426 66.2
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 1.3e-154 550.4 426 66.2
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 1.7e-154 550.1 462 66.2
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 1.8e-151 540.0 472 61.7
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 3.0e-151 539.3 472 61.4
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 3.0e-151 539.3 472 61.4
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 6.7e-143 511.5 471 58.6
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.5e-142 510.4 315 79.0
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 2.6e-139 499.6 407 62.2
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 2.2e-138 496.5 390 64.1
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 2.9e-138 496.1 469 56.5
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 4.3e-134 482.3 345 70.7
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.6e-133 480.3 399 66.2
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 3.0e-111 406.4 373 57.9
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 7.0e-108 395.2 379 53.8
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 1.6e-104 384.0 359 54.3
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 4.7e-104 382.5 386 51.6
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 3.0e-103 379.8 388 49.2
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 2.8e-101 373.2 276 70.7
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.6e-96 356.3 382 50.3
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 4.7e-96 355.9 401 49.4
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.4e-79 301.2 320 50.3
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 1.4e-76 291.2 340 45.6
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 2.5e-73 280.4 383 44.4
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.3e-58 231.5 138 76.1
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 2.4e-44 184.1 323 42.1
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 2.8e-40 170.6 113 75.2
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 4.9e-37 159.8 98 71.4
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 5.5e-36 156.4 142 69.7
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 2.5e-28 131.0 83 80.7
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.2e-27 128.6 83 79.5
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 4.6e-27 126.7 262 33.2
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.9e-26 123.6 286 31.8
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.9e-25 121.3 73 79.5
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 2.5e-25 120.9 81 74.1
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 3.3e-25 120.6 83 77.1
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 7.2e-20 102.8 390 28.5
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 8.7e-18 95.9 139 48.9
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.2e-14 85.5 73 63.0
TPR.G36012 Trifolium pratense HOM05D005548 ORTHO05D007497 2.6e-14 84.3 125 49.6
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 8.5e-13 79.3 130 45.4
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.9e-12 78.2 129 39.5
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 9.7e-09 65.9 116 43.1


User provided reference genes

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