Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 2.8e-31 138.7 112 100.0
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 2.2e-28 129.0 112 60.7
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 4.5e-21 104.8 113 54.0
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 1.9e-19 99.4 113 52.2
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 1.7e-15 86.3 116 61.2
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 2.2e-15 85.9 112 55.4
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 1.6e-13 79.7 115 47.0
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 3.5e-13 78.6 113 43.4
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 1.7e-12 76.3 117 71.8
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 1.5e-11 73.2 93 57.0
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 1.9e-11 72.8 116 50.9
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 3.2e-11 72.0 118 39.8
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 4.2e-11 71.6 105 64.8
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 4.2e-11 71.6 102 41.2
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 9.4e-11 70.5 30 96.7
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 9.4e-11 70.5 30 96.7
arahy.Tifrunner.gnm1.ann1.8E5M3M Arachis hypogaea HOM05D007326 ORTHO05D009048 1.2e-10 70.1 107 51.4
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 1.6e-10 69.7 30 96.7
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 1.6e-10 69.7 30 96.7
arahy.Tifrunner.gnm1.ann1.SUR8QF Arachis hypogaea HOM05D007326 ORTHO05D009048 2.1e-10 69.3 111 52.3
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 2.1e-10 69.3 30 96.7
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 4.7e-10 68.2 30 93.3
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 4.7e-10 68.2 30 93.3
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 4.7e-10 68.2 30 93.3
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 4.7e-10 68.2 30 93.3
CSS0006442 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 4.7e-10 68.2 105 60.0
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 4.7e-10 68.2 30 93.3
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 4.7e-10 68.2 30 93.3
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 4.7e-10 68.2 30 93.3
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 4.7e-10 68.2 116 37.9
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 8.0e-10 67.4 30 93.3
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 8.0e-10 67.4 30 93.3
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 8.0e-10 67.4 30 93.3
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 8.0e-10 67.4 103 46.6
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 8.0e-10 67.4 102 48.0
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 1.0e-09 67.0 30 90.0
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 1.0e-09 67.0 30 93.3
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 1.0e-09 67.0 30 93.3
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 1.0e-09 67.0 30 93.3
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 1.0e-09 67.0 30 93.3
THA.LOC104819263 Tarenaya hassleriana HOM05D007326 ORTHO05D009048 1.0e-09 67.0 30 90.0
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 1.4e-09 66.6 30 90.0
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 1.4e-09 66.6 28 96.4
Aa31LG1G16060 Aethionema arabicum HOM05D007326 ORTHO05D009048 1.8e-09 66.2 30 90.0
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 1.8e-09 66.2 30 90.0
EL10Ac9g21379 Beta vulgaris HOM05D007326 ORTHO05D009048 1.8e-09 66.2 30 90.0
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 1.8e-09 66.2 30 90.0
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 1.8e-09 66.2 30 90.0
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 1.8e-09 66.2 30 90.0
FAN10G2940 Fragaria x ananassa HOM05D007326 ORTHO05D009048 2.3e-09 65.9 30 90.0
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 3.0e-09 65.5 30 86.7
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 3.0e-09 65.5 30 90.0
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 3.0e-09 65.5 30 86.7
Hma1.2p1_0538F.1_g174400 Hydrangea macrophylla HOM05D007326 ORTHO05D009048 3.0e-09 65.5 30 86.7
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 4.0e-09 65.1 30 90.0
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 4.0e-09 65.1 30 86.7
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 5.2e-09 64.7 30 90.0
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 5.2e-09 64.7 30 86.7
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 5.2e-09 64.7 30 86.7
C03p59560 Brassica napus HOM05D007326 ORTHO05D009048 5.2e-09 64.7 30 86.7
BolC3t18219H Brassica oleracea HOM05D007326 ORTHO05D009048 5.2e-09 64.7 30 86.7
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 5.2e-09 64.7 30 86.7
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 5.2e-09 64.7 30 86.7
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 5.2e-09 64.7 107 38.3
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 5.2e-09 64.7 30 86.7
Sp2g29160 Schrenkiella parvula HOM05D007326 ORTHO05D009048 5.2e-09 64.7 30 86.7
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 5.2e-09 64.7 119 40.3
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 6.8e-09 64.3 30 86.7
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 6.8e-09 64.3 30 86.7
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 6.8e-09 64.3 28 92.9
Mapoly0007s0050 Marchantia polymorpha HOM05D007326 ORTHO05D009048 6.8e-09 64.3 30 83.3
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 6.8e-09 64.3 30 90.0
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 8.8e-09 63.9 30 86.7
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 1.2e-08 63.5 30 90.0
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 1.2e-08 63.5 30 86.7
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 1.2e-08 63.5 30 86.7
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 1.5e-08 63.2 30 83.3
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 1.5e-08 63.2 30 83.3
Carub.0008s2698 Capsella rubella HOM05D007326 ORTHO05D009048 1.5e-08 63.2 30 83.3
CARHR280100 Cardamine hirsuta HOM05D007326 ORTHO05D009048 1.5e-08 63.2 30 83.3
SGA_v2.0_scaffold105G30435 Striga asiatica HOM05D007326 ORTHO05D009048 1.5e-08 63.2 30 83.3
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 1.5e-08 63.2 30 83.3
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 2.0e-08 62.8 30 86.7
CsaV3_5G000570 Cucumis sativus L. HOM05D007326 ORTHO05D009048 2.0e-08 62.8 30 90.0
Prupe.2G311900 Prunus persica HOM05D007326 ORTHO05D009048 2.0e-08 62.8 102 49.0
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 2.0e-08 62.8 29 82.8
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 2.6e-08 62.4 30 80.0
SEGI_38766 Sequoiadendron giganteum HOM05D007326 ORTHO05D009048 4.4e-08 61.6 29 86.2
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 5.7e-08 61.2 30 83.3
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 9.8e-08 60.5 29 82.8
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 1.3e-07 60.1 30 83.3
CBR_g41366 Chara braunii HOM05D007326 ORTHO05D009048 4.8e-07 58.2 26 92.3
unitig_8.g3560 Utricularia gibba HOM05D000146 ORTHO05D000178 4.8e-07 58.2 26 80.8
MELO3C005879.2 Cucumis melo HOM05D007326 ORTHO05D009048 8.3e-07 57.4 30 83.3
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 8.3e-07 57.4 30 83.3
RcHm_v2.0_Chr1g0381021 Rosa chinensis HOM05D007326 ORTHO05D009048 1.1e-06 57.0 24 95.8
PRCOL_00002099 Prasinoderma coloniale HOM05D007326 ORTHO05D009048 1.4e-06 56.6 29 79.3
MCO04G224 Micromonas commoda HOM05D007326 ORTHO05D009048 1.8e-06 56.2 28 82.1
HPP92_020021 Vanilla planifolia HOM05D007326 ORTHO05D009048 2.4e-06 55.8 30 80.0
FAN01G1037 Fragaria x ananassa HOM05D007326 ORTHO05D009048 7.0e-06 54.3 28 78.6
FAN06G2911 Fragaria x ananassa HOM05D007326 ORTHO05D009048 7.0e-06 54.3 28 78.6
TAR629G2746 Trochodendron aralioides HOM05D007326 ORTHO05D009048 9.1e-06 53.9 29 75.9


User provided reference genes

Program Settings