Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G162800 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 4.9e-36 154.1 85 100.0
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 5.3e-30 134.0 85 85.9
Glyma.07G086900 Glycine max HOM05D008067 ORTHO05D010226 2.4e-27 125.2 85 83.5
Lj2g0006280 Lotus japonicus HOM05D008067 ORTHO05D010226 2.3e-17 92.0 84 61.9
Lalb_Chr05g0222841 Lupinus albus HOM05D008067 ORTHO05D010226 5.7e-16 87.4 86 57.0
Lj2g0013738 Lotus japonicus HOM05D008067 ORTHO05D010226 2.2e-15 85.5 78 61.5
Lj2g0025160 Lotus japonicus HOM05D008067 ORTHO05D010226 3.7e-15 84.7 84 59.5
Psat1g041240 Pisum sativum HOM05D008067 ORTHO05D010226 1.1e-14 83.2 86 55.8
TPR.G21702 Trifolium pratense HOM05D008067 ORTHO05D010226 1.8e-14 82.4 84 59.5
TPR.G35272 Trifolium pratense HOM05D003111 ORTHO05D003502 3.1e-14 81.6 77 55.8
Lj2g0022306 Lotus japonicus HOM05D008067 ORTHO05D010226 4.1e-14 81.3 84 60.7
Lalb_Chr22g0352831 Lupinus albus HOM05D008067 ORTHO05D010226 4.1e-14 81.3 79 55.7
Psat7g013560 Pisum sativum HOM05D008067 ORTHO05D010226 5.3e-14 80.9 83 57.8
TPR.G23486 Trifolium pratense HOM05D008067 ORTHO05D010226 9.0e-14 80.1 85 57.6
CiPaw.04G164800 Carya illinoinensis HOM05D008067 ORTHO05D010226 5.9e-13 77.4 78 55.1
Potri.018G079200 Populus trichocarpa HOM05D008067 ORTHO05D010226 1.0e-12 76.6 69 58.0
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 2.2e-12 75.5 76 55.3
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 2.2e-12 75.5 76 55.3
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 3.8e-12 74.7 76 51.3
Medtr6g086485 Medicago truncatula HOM05D008067 ORTHO05D010226 5.0e-12 74.3 89 52.8
Medtr8g083450 Medicago truncatula HOM05D008067 ORTHO05D010226 5.0e-12 74.3 65 60.0
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 5.0e-12 74.3 77 53.2
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 6.5e-12 73.9 80 55.0
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 1.1e-11 73.2 76 56.6
Glyma.08G039000 Glycine max HOM05D008067 ORTHO05D010226 1.4e-11 72.8 71 57.7
ClCG11G002490 Citrullus lanatus HOM05D008067 ORTHO05D010226 3.2e-11 71.6 71 53.5
QL02p085507 Quercus lobata HOM05D008067 ORTHO05D010226 3.2e-11 71.6 71 56.3
COL.COLO4_34910 Corchorus olitorius HOM05D008067 ORTHO05D010226 9.4e-11 70.1 76 47.4
MELO3C004555.2 Cucumis melo HOM05D008067 ORTHO05D010226 9.4e-11 70.1 71 53.5
Glyma.05G231500 Glycine max HOM05D008067 ORTHO05D010226 9.4e-11 70.1 69 58.0
Sed0012648 Sechium edule HOM05D008067 ORTHO05D010226 9.4e-11 70.1 71 53.5
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 1.6e-10 69.3 71 53.5
FvH4_1g04950 Fragaria vesca HOM05D008067 ORTHO05D010226 2.7e-10 68.6 85 49.4
Nitab4.5_0003537g0010 Nicotiana tabacum HOM05D008067 ORTHO05D010226 3.6e-10 68.2 44 70.5
CsaV3_2G002290 Cucumis sativus L. HOM05D008067 ORTHO05D010226 4.6e-10 67.8 71 50.7
Peaxi162Scf00560g00114 Petunia axillaris HOM05D008067 ORTHO05D010226 4.6e-10 67.8 78 50.0
Sed0011788 Sechium edule HOM05D008067 ORTHO05D010226 1.0e-09 66.6 71 49.3
FAN23G0784 Fragaria x ananassa HOM05D008067 ORTHO05D010226 1.4e-09 66.2 77 49.4
PGSC0003DMG400000315 Solanum tuberosum HOM05D008067 ORTHO05D010226 1.4e-09 66.2 45 73.3
Gohir.A07G006600 Gossypium hirsutum HOM05D008067 ORTHO05D010226 3.0e-09 65.1 73 53.4
Phvul.002G313700 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 3.0e-09 65.1 40 77.5
Atru.chr7.1341 Acer truncatum HOM05D008067 ORTHO05D010226 3.9e-09 64.7 45 64.4
Gohir.D07G005400 Gossypium hirsutum HOM05D008067 ORTHO05D010226 3.9e-09 64.7 73 53.4
Gorai.001G004900 Gossypium raimondii HOM05D008067 ORTHO05D010226 3.9e-09 64.7 73 53.4
Gorai.010G070100 Gossypium raimondii HOM05D008067 ORTHO05D010226 3.9e-09 64.7 77 49.4
Ciclev10010044m.g Citrus clementina HOM05D008067 ORTHO05D010226 6.7e-09 63.9 72 54.2
FAN28G1234 Fragaria x ananassa HOM05D008067 ORTHO05D010226 6.7e-09 63.9 76 51.3
Gohir.D06G060201 Gossypium hirsutum HOM05D008067 ORTHO05D010226 6.7e-09 63.9 75 50.7
Lj4g0026171 Lotus japonicus HOM05D008067 ORTHO05D010226 8.8e-09 63.5 59 62.7
RhsimUnG0085400 Rhododendron simsii HOM05D008067 ORTHO05D010226 8.8e-09 63.5 67 50.7
Solyc12g007060.1 Solanum lycopersicum HOM05D008067 ORTHO05D010226 1.9e-08 62.4 43 72.1
Sopen12g003050 Solanum pennellii HOM05D008067 ORTHO05D010226 1.9e-08 62.4 43 72.1
Gohir.A06G061900 Gossypium hirsutum HOM05D008067 ORTHO05D010226 2.5e-08 62.0 77 48.1
RcHm_v2.0_Chr2g0090561 Rosa chinensis HOM05D008067 ORTHO05D010226 2.5e-08 62.0 78 52.6
CSS0009961 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 3.3e-08 61.6 62 53.2
CSS0037112 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 3.3e-08 61.6 62 53.2
CiPaw.03G232800 Carya illinoinensis HOM05D008067 ORTHO05D010226 7.4e-08 60.5 81 49.4
TAR636G2707 Trochodendron aralioides HOM05D003111 ORTHO05D003502 7.4e-08 60.5 65 47.7
SHI02746 Sapria himalayana HOM05D008067 ORTHO05D010226 1.7e-07 59.3 46 63.0
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 2.2e-07 58.9 44 61.4
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 3.7e-07 58.2 44 61.4
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 4.8e-07 57.8 44 61.4
Ah.09g227900 Amaranthus hybridus HOM05D008067 ORTHO05D010226 1.1e-06 56.6 68 51.5
Aqoxy7G01692 Aquilegia oxysepala HOM05D008067 ORTHO05D010226 1.1e-06 56.6 75 45.3
DCAR_028716 Daucus carota HOM05D008067 ORTHO05D010226 1.4e-06 56.2 46 58.7
HPP92_010803 Vanilla planifolia HOM05D008067 ORTHO05D010226 3.1e-06 55.1 66 45.5
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 5.3e-06 54.3 41 61.0
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 6.9e-06 53.9 54 55.6
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 6.9e-06 53.9 51 51.0
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 6.9e-06 53.9 52 48.1
Nn8g39208 Nelumbo nucifera HOM05D008067 ORTHO05D010226 6.9e-06 53.9 53 50.9
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 6.9e-06 53.9 42 57.1
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 6.9e-06 53.9 51 51.0
Lsat_1_v5_gn_8_95580 Lactuca sativa HOM05D008067 ORTHO05D010226 9.1e-06 53.5 41 65.9
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 9.1e-06 53.5 40 62.5


User provided reference genes

Program Settings