Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G162600 Phaseolus vulgaris HOM05D007609 ORTHO05D009539 2.0e-38 161.8 73 100.0
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 3.6e-27 124.4 77 72.7
Glyma.09G189800 Glycine max HOM05D007609 ORTHO05D009539 1.0e-26 122.9 74 74.3
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 8.3e-24 113.2 81 63.0
VMungo0464G1934 Vigna mungo HOM05D007609 ORTHO05D009539 3.5e-22 107.8 69 72.5
TPR.G35275 Trifolium pratense HOM05D007609 ORTHO05D009539 5.0e-21 104.0 86 57.0
Lalb_Chr22g0352851 Lupinus albus HOM05D007609 ORTHO05D009539 8.0e-19 96.7 80 55.0
Medtr6g086445 Medicago truncatula HOM05D007609 ORTHO05D009539 3.4e-17 91.3 85 51.8
Ca_25525_v3 Cicer arietinum L. HOM05D007609 ORTHO05D009539 4.4e-17 90.9 78 55.1
Psat1g041120 Pisum sativum HOM05D007609 ORTHO05D009539 4.1e-15 84.3 68 58.8
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 5.0e-13 77.4 81 48.1
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 2.5e-12 75.1 81 48.1
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 4.3e-12 74.3 78 44.9
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 5.6e-12 73.9 80 48.8
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 7.3e-12 73.6 78 43.6
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 9.5e-12 73.2 82 48.8
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 1.2e-11 72.8 80 46.2
Lj4g0003308 Lotus japonicus HOM05D007609 ORTHO05D009539 1.6e-11 72.4 42 73.8
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 2.1e-11 72.0 81 43.2
Medtr8g083460 Medicago truncatula HOM05D007609 ORTHO05D009539 2.8e-11 71.6 50 66.0
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 3.6e-11 71.2 78 42.3
Lalb_Chr05g0222821 Lupinus albus HOM05D007609 ORTHO05D009539 4.7e-11 70.9 92 47.8
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 1.0e-10 69.7 82 40.2
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 1.0e-10 69.7 61 49.2
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.3e-10 68.6 61 49.2
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 2.3e-10 68.6 84 42.9
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 6.8e-10 67.0 43 67.4
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 2.0e-09 65.5 61 47.5
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 3.4e-09 64.7 84 40.5
Nn2g11764 Nelumbo nucifera HOM05D007609 ORTHO05D009539 3.4e-09 64.7 88 37.5
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 4.4e-09 64.3 79 43.0
Peaxi162Scf00560g00120 Petunia axillaris HOM05D007609 ORTHO05D009539 4.4e-09 64.3 64 40.6
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 4.4e-09 64.3 75 44.0
Haze_25706 Corylus avellana HOM05D007609 ORTHO05D009539 5.8e-09 63.9 87 43.7
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 7.5e-09 63.5 78 48.7
Lsat_1_v5_gn_5_101501 Lactuca sativa HOM05D007609 ORTHO05D009539 1.3e-08 62.8 41 61.0
Sed0020512 Sechium edule HOM05D007609 ORTHO05D009539 1.3e-08 62.8 72 44.4
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 2.2e-08 62.0 87 37.9
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 2.2e-08 62.0 38 63.2
FvH4_1g05030 Fragaria vesca HOM05D007609 ORTHO05D009539 2.9e-08 61.6 94 40.4
FAN26G1953 Fragaria x ananassa HOM05D007609 ORTHO05D009539 2.9e-08 61.6 94 39.4
FAN26G2876 Fragaria x ananassa HOM05D007609 ORTHO05D009539 2.9e-08 61.6 94 39.4
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.9e-08 61.6 33 69.7
RcHm_v2.0_Chr2g0090641 Rosa chinensis HOM05D007609 ORTHO05D009539 2.9e-08 61.6 92 37.0
CsaV3_1G030560 Cucumis sativus L. HOM05D007609 ORTHO05D009539 4.9e-08 60.8 73 41.1
FAN28G0995 Fragaria x ananassa HOM05D007609 ORTHO05D009539 4.9e-08 60.8 91 40.7
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 4.9e-08 60.8 38 60.5
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 6.4e-08 60.5 34 67.6
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 1.4e-07 59.3 79 39.2
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 1.4e-07 59.3 67 44.8
Eucgr.C03849 Eucalyptus grandis HOM05D007609 ORTHO05D009539 1.9e-07 58.9 51 51.0
Peaxi162Scf00015g00416 Petunia axillaris HOM05D007609 ORTHO05D009539 1.9e-07 58.9 78 44.9
COL.COLO4_34908 Corchorus olitorius HOM05D007609 ORTHO05D009539 2.4e-07 58.5 32 68.8
CsaV3_7G033200 Cucumis sativus L. HOM05D010933 ORTHO05D013136 2.4e-07 58.5 72 40.3
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 2.4e-07 58.5 85 37.6
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 2.4e-07 58.5 69 42.0
Nn8g39210 Nelumbo nucifera HOM05D007609 ORTHO05D009539 3.2e-07 58.2 82 36.6
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 3.2e-07 58.2 42 54.8
Ah.14g081870 Amaranthus hybridus HOM05D007609 ORTHO05D009539 4.1e-07 57.8 36 63.9
MELO3C024233.2 Cucumis melo HOM05D010933 ORTHO05D013136 4.1e-07 57.8 72 41.7
DCAR_023052 Daucus carota HOM05D007609 ORTHO05D009539 4.1e-07 57.8 47 48.9
Sopen06g024990 Solanum pennellii HOM05D007609 ORTHO05D009539 4.1e-07 57.8 38 57.9
Eucgr.C01049 Eucalyptus grandis HOM05D007609 ORTHO05D009539 7.0e-07 57.0 86 39.5
Atru.chr7.1339 Acer truncatum HOM05D007609 ORTHO05D009539 9.2e-07 56.6 79 38.0
FAN23G1574 Fragaria x ananassa HOM05D007609 ORTHO05D009539 9.2e-07 56.6 32 65.6
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 9.2e-07 56.6 43 53.5
QL10p054851 Quercus lobata HOM05D007609 ORTHO05D009539 1.2e-06 56.2 39 59.0
Solyc03g120160.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 1.6e-06 55.8 70 42.9
Sed0016972 Sechium edule HOM05D007609 ORTHO05D009539 2.0e-06 55.5 67 40.3
Sp1g38930 Schrenkiella parvula HOM05D010933 ORTHO05D013136 2.7e-06 55.1 44 54.5
Sopen03g039040 Solanum pennellii HOM05D007609 ORTHO05D009539 2.7e-06 55.1 72 40.3
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 2.7e-06 55.1 31 64.5
Cfa003264 Carpinus fangiana HOM05D007609 ORTHO05D009539 3.5e-06 54.7 87 42.5
AUR62011005 Chenopodium quinoa HOM05D007609 ORTHO05D009539 3.5e-06 54.7 62 41.9
CiPaw.01G239000 Carya illinoinensis HOM05D007609 ORTHO05D009539 4.6e-06 54.3 33 57.6
Prupe.7G229700 Prunus persica HOM05D007609 ORTHO05D009539 4.6e-06 54.3 35 60.0
Sopen03g039030 Solanum pennellii HOM05D007609 ORTHO05D009539 4.6e-06 54.3 53 47.2
BcaB04g17155 Brassica carinata HOM05D010933 ORTHO05D013136 6.0e-06 53.9 42 54.8
SGA_v2.0_scaffold5G02584 Striga asiatica HOM05D007609 ORTHO05D009539 6.0e-06 53.9 43 58.1
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 7.8e-06 53.5 25 72.0
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 7.8e-06 53.5 34 58.8
Sed0019634 Sechium edule HOM05D007609 ORTHO05D009539 7.8e-06 53.5 25 76.0


User provided reference genes

Program Settings