Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 0.0e+00 1201.8 692 100.0
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 0.0e+00 1135.9 690 91.4
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 0.0e+00 1123.2 692 90.6
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 0.0e+00 1081.6 692 91.6
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 0.0e+00 1080.5 689 87.7
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 9.5e-312 1072.8 691 86.0
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.0e-309 1066.2 679 87.9
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 4.2e-303 1044.3 689 85.9
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 2.8e-299 1031.6 685 82.8
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 1.3e-296 1022.7 690 83.6
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 2.3e-293 1011.9 716 79.3
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 8.9e-293 1010.0 692 81.4
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 2.0e-292 1008.8 690 82.2
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 7.5e-292 1006.9 716 78.9
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.7e-291 1005.7 692 81.4
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.9e-291 1005.0 692 80.2
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.7e-291 1004.6 683 82.0
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.1e-290 1003.0 690 81.9
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.4e-290 1002.7 690 81.6
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 2.4e-290 1001.9 688 80.5
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.2e-290 1001.5 692 80.2
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 1.2e-289 999.6 683 82.6
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 2.3e-288 995.3 694 79.5
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 2.9e-288 995.0 692 80.2
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 2.5e-287 991.9 692 79.9
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 3.3e-287 991.5 692 80.2
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 7.3e-287 990.3 681 81.6
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 7.3e-287 990.3 660 82.4
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 2.1e-286 988.8 692 79.2
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 2.3e-285 985.3 693 80.2
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 2.3e-285 985.3 692 79.6
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 2.3e-285 985.3 683 80.8
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 5.8e-284 980.7 694 79.8
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 4.9e-283 977.6 693 77.6
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 5.4e-282 974.2 657 80.5
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 7.0e-282 973.8 682 79.3
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.7e-281 971.8 682 78.9
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 8.6e-280 966.8 681 79.4
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.5e-279 966.1 669 79.7
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 2.5e-279 965.3 679 78.2
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 5.6e-279 964.1 684 78.8
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 7.3e-279 963.8 682 79.8
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 1.2e-278 963.0 687 76.7
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.7e-278 961.1 692 77.2
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 4.7e-278 961.1 686 78.7
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 2.6e-276 955.3 692 78.9
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 7.5e-276 953.7 685 75.8
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 9.8e-276 953.4 689 80.3
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 9.8e-276 953.4 682 78.2
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 2.9e-275 951.8 692 77.3
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 4.9e-275 951.0 687 76.6
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 6.4e-275 950.7 689 77.2
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 6.4e-275 950.7 751 71.6
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 1.1e-274 949.9 670 76.7
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.4e-274 949.5 751 71.6
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.9e-274 949.1 689 76.1
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.9e-274 949.1 682 79.2
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 9.2e-274 946.8 682 78.4
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.2e-273 946.4 687 76.1
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 3.5e-273 944.9 664 77.1
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.0e-273 944.1 682 80.2
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 6.0e-273 944.1 681 79.1
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 1.0e-272 943.3 688 78.6
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.7e-272 942.6 682 78.2
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 3.9e-272 941.4 694 76.9
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 5.1e-272 941.0 688 77.5
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 6.6e-272 940.6 664 77.1
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 8.6e-272 940.3 687 75.4
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 1.5e-271 939.5 687 76.9
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 1.9e-271 939.1 653 78.6
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 4.3e-271 937.9 687 76.7
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.2e-270 936.4 662 78.1
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 2.1e-270 935.6 689 76.9
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 4.4e-268 927.9 684 77.3
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 9.9e-268 926.8 687 75.8
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 1.9e-266 922.5 688 76.7
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 3.2e-266 921.8 688 76.7
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 4.1e-266 921.4 685 77.4
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 7.1e-266 920.6 684 77.0
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 9.2e-266 920.2 685 75.5
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.9e-264 914.8 731 73.1
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 3.3e-263 911.8 687 77.4
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 3.3e-263 911.8 687 77.4
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 3.6e-262 908.3 687 76.0
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 8.9e-261 903.7 692 75.4
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 2.0e-260 902.5 657 77.3
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 1.7e-259 899.4 678 74.5
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 5.4e-258 894.4 682 72.6
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 9.3e-258 893.6 718 72.8
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 3.9e-256 888.3 690 72.3
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 6.2e-254 880.9 682 73.8
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 3.4e-252 875.2 691 72.8
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.1e-250 870.2 739 67.8
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 3.0e-248 862.1 1042 53.3
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 5.1e-248 861.3 643 76.8
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 1.5e-247 859.8 678 69.3
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 1.5e-244 849.7 672 72.0
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.1e-242 843.6 670 72.5
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.5e-242 841.3 715 67.6
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 1.2e-241 840.1 681 69.5
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.6e-241 839.7 668 71.9
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 5.1e-240 834.7 683 69.0
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 6.7e-240 834.3 721 67.0
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.1e-237 827.0 668 70.4
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 3.4e-236 822.0 581 79.0
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 7.6e-236 820.8 661 71.0
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.7e-235 819.7 656 70.7
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 9.3e-234 813.9 619 74.5
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.7e-232 807.4 736 64.4
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 1.1e-231 807.0 693 67.8
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.5e-231 805.8 664 69.7
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 8.4e-227 790.8 671 67.7
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 1.1e-215 753.8 550 79.3
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.4e-205 720.3 705 63.7
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 7.2e-202 708.0 684 60.5
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 1.8e-200 703.4 674 60.7
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.7e-198 696.8 659 59.3
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 5.3e-197 691.8 651 61.6
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 8.3e-158 561.6 418 78.2
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.1e-157 561.2 716 49.6
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.4e-149 533.5 405 76.8
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 4.1e-149 532.7 367 77.9
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.0e-131 474.9 348 71.3
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 1.0e-118 431.8 579 49.2
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 4.2e-101 373.2 364 64.3
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 1.5e-85 321.6 505 47.3
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 4.0e-83 313.5 521 45.3
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.4e-75 288.5 270 63.7
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 4.4e-74 283.5 705 32.2
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.0e-50 204.9 185 64.3
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 4.6e-47 193.7 122 81.1
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 4.6e-47 193.7 568 32.7
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 1.4e-43 182.2 122 77.9
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.0e-43 180.6 162 62.3
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 4.4e-42 177.2 782 29.0
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 6.0e-39 166.8 94 89.4
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 1.2e-31 142.5 602 27.7
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.2e-25 121.7 681 22.8
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 6.4e-25 120.2 90 74.4
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.6e-18 98.2 71 73.2
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 7.4e-13 80.1 109 55.0
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 1.1e-11 76.3 751 22.4
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 1.4e-11 75.9 49 75.5
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.9e-09 68.2 65 60.0
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 1.2e-07 62.8 82 50.0
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 1.3e-06 59.3 49 67.3
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 2.3e-06 58.5 82 50.0


User provided reference genes

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