Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 1.8e-165 585.9 310 100.0
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 1.3e-155 553.1 310 94.5
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.1e-154 550.1 310 94.2
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 2.5e-146 522.3 310 89.0
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 3.6e-145 518.5 310 87.4
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.8e-144 516.2 310 86.5
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 5.2e-144 514.6 310 86.8
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 9.9e-143 510.4 310 87.4
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 4.1e-141 505.0 310 87.1
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.3e-139 500.0 310 84.8
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 2.3e-139 499.2 310 84.8
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.8e-136 489.6 310 84.2
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.7e-134 483.0 310 81.9
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 4.6e-132 474.9 312 80.4
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 3.9e-131 471.9 310 80.0
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.1e-130 470.3 309 80.3
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 9.6e-130 467.2 310 79.0
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.6e-129 466.5 310 78.4
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 2.8e-129 465.7 310 78.4
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 6.2e-129 464.5 310 77.4
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 8.1e-129 464.2 310 77.7
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.1e-128 463.8 310 78.1
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.4e-128 463.4 310 80.0
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.4e-128 463.4 310 78.1
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.8e-128 463.0 310 77.4
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 2.4e-128 462.6 310 78.7
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 2.6e-127 459.1 310 78.1
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.4e-127 458.8 318 77.4
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 5.8e-127 458.0 310 77.7
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 5.8e-127 458.0 310 77.7
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 9.9e-127 457.2 310 78.1
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 1.3e-126 456.8 310 78.7
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 3.8e-126 455.3 310 76.1
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 4.9e-126 454.9 310 77.4
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 6.4e-126 454.5 318 76.4
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 6.4e-126 454.5 310 77.1
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.4e-125 453.4 311 77.8
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 3.2e-125 452.2 310 76.8
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.2e-125 452.2 318 74.8
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 5.4e-125 451.4 317 75.7
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 5.4e-125 451.4 317 75.7
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.2e-124 450.3 310 76.5
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.7e-124 449.1 310 77.1
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 3.5e-124 448.7 310 77.1
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 2.3e-123 446.0 311 76.5
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 2.3e-123 446.0 311 77.2
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 2.3e-123 446.0 310 75.8
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.1e-123 444.9 310 75.2
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 3.3e-122 442.2 310 74.5
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 4.3e-122 441.8 310 79.7
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 7.4e-122 441.0 309 74.4
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 7.4e-122 441.0 318 74.8
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.3e-121 440.3 318 73.0
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.3e-121 440.3 318 72.6
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 3.7e-121 438.7 318 72.6
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 4.8e-121 438.3 318 75.5
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 8.1e-121 437.6 318 73.0
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 1.4e-120 436.8 310 74.2
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 3.1e-120 435.6 310 73.9
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 3.1e-120 435.6 310 73.9
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 6.9e-120 434.5 318 72.3
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 6.9e-120 434.5 319 71.8
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.2e-119 433.7 318 72.3
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.5e-119 433.3 319 71.8
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 3.4e-119 432.2 319 72.4
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 5.8e-119 431.4 318 70.8
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 7.6e-119 431.0 316 73.4
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 1.7e-118 429.9 310 73.9
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 2.2e-118 429.5 319 72.7
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 2.2e-118 429.5 310 72.9
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 3.8e-118 428.7 362 65.5
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 6.4e-118 427.9 318 70.1
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.4e-117 426.8 345 67.5
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 3.2e-117 425.6 310 71.9
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 3.2e-117 425.6 311 73.0
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 4.6e-116 421.8 311 72.7
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 4.6e-116 421.8 318 70.1
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 6.0e-116 421.4 310 71.3
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 7.9e-116 421.0 310 71.6
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 1.3e-115 420.2 312 71.8
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 3.0e-115 419.1 318 71.1
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 5.1e-115 418.3 311 72.3
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.5e-114 416.8 318 70.4
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 2.5e-114 416.0 285 76.8
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.6e-113 413.3 312 70.5
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 3.7e-113 412.1 310 70.3
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 8.2e-113 411.0 310 72.3
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.1e-112 410.6 312 70.8
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.4e-112 410.2 312 70.2
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.1e-112 409.1 310 70.0
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 5.3e-112 408.3 310 70.3
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 9.0e-112 407.5 307 70.0
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 6.5e-110 401.4 278 77.7
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 8.4e-110 401.0 315 68.3
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.4e-109 400.2 294 72.8
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.4e-109 400.2 294 72.4
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 7.1e-109 397.9 297 71.7
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 7.1e-109 397.9 294 72.1
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 7.1e-109 397.9 315 68.3
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 1.2e-108 397.1 316 67.1
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.6e-105 386.7 279 72.4
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.1e-104 384.0 319 68.0
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.4e-104 383.6 312 66.7
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 1.8e-104 383.3 286 71.7
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 2.4e-104 382.9 262 77.1
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 3.1e-104 382.5 321 65.7
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.2e-103 380.6 286 70.6
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 3.4e-103 379.0 281 71.5
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.3e-102 377.1 310 65.8
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.2e-101 372.5 256 76.2
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 2.7e-100 369.4 262 74.8
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 1.0e-99 367.5 276 69.6
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.4e-96 356.3 314 62.7
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 4.5e-95 352.1 310 61.9
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 2.9e-94 349.4 310 63.9
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 5.5e-93 345.1 740 36.4
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.7e-92 342.8 262 66.4
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.8e-91 340.1 256 70.3
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 1.8e-91 340.1 313 63.6
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.5e-86 321.6 310 58.7
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 2.0e-82 310.1 221 71.9
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.4e-82 308.9 228 71.5
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 4.8e-81 305.4 242 66.9
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.4e-80 303.1 310 55.8
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.1e-76 290.0 314 52.2
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.8e-72 276.9 391 48.3
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 9.4e-69 264.6 318 47.8
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.7e-65 253.8 309 51.8
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 2.6e-58 229.9 290 48.3
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 7.5e-58 228.4 178 71.9
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 2.3e-54 216.9 186 66.7
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 3.2e-48 196.4 257 51.0
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.6e-47 192.6 150 74.0
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 4.6e-47 192.6 121 88.4
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 4.6e-47 192.6 157 71.3
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.2e-44 184.5 120 85.8
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 6.4e-41 172.2 144 68.8
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 2.3e-38 163.7 244 44.3
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 8.1e-36 155.2 257 43.6
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 3.1e-35 153.3 313 36.4
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.5e-34 151.0 113 63.7
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 2.4e-27 127.1 128 61.7
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.4e-27 127.1 110 60.9
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 5.2e-27 125.9 91 71.4
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 5.8e-26 122.5 100 63.0
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 5.8e-26 122.5 149 54.4
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 3.2e-24 116.7 93 65.6
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.7e-23 113.6 89 62.9
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.0e-22 110.2 98 66.3
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.1e-14 82.8 58 69.0
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 6.6e-14 82.4 84 56.0
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.1e-13 81.6 51 82.4
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 3.3e-13 80.1 397 24.7
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 3.2e-08 63.5 120 37.5
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 6.7e-06 55.8 34 70.6


User provided reference genes

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