Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G147000 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 3.9e-175 618.6 472 100.0
VMungo0464G0018 Vigna mungo HOM05D005860 ORTHO05D006977 5.2e-151 538.5 448 96.0
Glyma.05G075600 Glycine max HOM05D005860 ORTHO05D006977 7.4e-150 534.6 478 85.1
Phvul.004G055500 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 1.0e-143 514.2 472 80.9
Lj2g0013553 Lotus japonicus HOM05D005860 ORTHO05D006977 5.5e-137 491.9 473 85.2
Glyma.19G075100 Glycine max HOM05D005860 ORTHO05D006977 1.7e-130 470.3 471 78.8
arahy.Tifrunner.gnm1.ann1.SB3XQV Arachis hypogaea HOM05D005860 ORTHO05D006977 4.4e-126 455.7 471 80.3
TPR.G5727 Trifolium pratense HOM05D001503 ORTHO05D003820 1.8e-124 450.3 474 76.8
arahy.Tifrunner.gnm1.ann1.WZ54PF Arachis hypogaea HOM05D005860 ORTHO05D006977 7.8e-123 444.9 471 79.2
Psat1g161720 Pisum sativum HOM05D005860 ORTHO05D006977 2.3e-122 443.4 471 77.7
Medtr2g034600 Medicago truncatula HOM05D005860 ORTHO05D006977 6.1e-120 435.3 475 75.2
Lalb_Chr02g0157831 Lupinus albus HOM05D005860 ORTHO05D006977 1.4e-116 424.1 475 77.7
QL02p072028 Quercus lobata HOM05D005860 ORTHO05D006977 5.6e-113 412.1 450 73.6
Gohir.A10G079300 Gossypium hirsutum HOM05D005860 ORTHO05D006977 2.0e-110 403.7 429 77.2
CiPaw.04G034700 Carya illinoinensis HOM05D005860 ORTHO05D006977 4.4e-110 402.5 447 68.5
Duzib116G0811 Durio zibethinus HOM05D005860 ORTHO05D006977 4.4e-110 402.5 450 74.7
Cpa.g.sc171.37 Carica papaya HOM05D005860 ORTHO05D006977 2.2e-109 400.2 448 75.9
Eucgr.J02311 Eucalyptus grandis HOM05D005860 ORTHO05D006977 2.2e-109 400.2 477 65.8
COL.COLO4_03595 Corchorus olitorius HOM05D005860 ORTHO05D006977 8.3e-109 398.3 448 79.7
Manes.15G158200 Manihot esculenta HOM05D005860 ORTHO05D006977 3.2e-108 396.4 447 79.4
Potri.017G067600 Populus trichocarpa HOM05D005860 ORTHO05D006977 4.1e-108 396.0 460 74.1
Haze_14838 Corylus avellana HOM05D005860 ORTHO05D006977 7.0e-108 395.2 506 68.8
Gorai.011G077700 Gossypium raimondii HOM05D005860 ORTHO05D006977 7.0e-108 395.2 429 76.0
TAR622G0256 Trochodendron aralioides HOM05D005860 ORTHO05D006977 2.7e-107 393.3 473 67.4
Atru.chr4.382 Acer truncatum HOM05D005860 ORTHO05D006977 3.5e-107 392.9 452 72.6
Ciclev10011572m.g Citrus clementina HOM05D005860 ORTHO05D006977 1.5e-105 387.5 464 72.2
Sabra17G0063700 Salix brachista HOM05D005860 ORTHO05D006977 5.6e-105 385.6 462 71.6
Sed0023405 Sechium edule HOM05D005860 ORTHO05D006977 5.6e-105 385.6 471 73.7
Glyma.09G171700 Glycine max HOM05D005860 ORTHO05D006977 7.3e-105 385.2 221 88.2
Hma1.2p1_1219F.1_g267900 Hydrangea macrophylla HOM05D005860 ORTHO05D006977 6.2e-104 382.1 465 69.9
GSVIVG01001819001 Vitis vinifera HOM05D005860 ORTHO05D006977 1.8e-103 380.6 455 73.0
CAN.G473.79 Capsicum annuum HOM05D005860 ORTHO05D006977 1.3e-101 374.4 461 70.9
ClCG01G016270 Citrullus lanatus HOM05D005860 ORTHO05D006977 1.9e-100 370.5 470 73.4
Nitab4.5_0009757g0020 Nicotiana tabacum HOM05D005860 ORTHO05D006977 5.4e-100 369.0 459 71.5
Aqoxy5G03469 Aquilegia oxysepala HOM05D005860 ORTHO05D006977 7.1e-100 368.6 466 73.8
Cc02_g00900 Coffea canephora HOM05D005860 ORTHO05D006977 7.1e-100 368.6 465 66.2
PSO782G4049 Papaver somniferum HOM05D005860 ORTHO05D006977 7.1e-100 368.6 488 67.0
MELO3C007497.2 Cucumis melo HOM05D005860 ORTHO05D006977 1.2e-99 367.9 440 77.0
Oeu058768.1 Olea europaea HOM05D005860 ORTHO05D006977 1.2e-99 367.9 462 69.0
Peaxi162Scf00420g00442 Petunia axillaris HOM05D005860 ORTHO05D006977 1.6e-99 367.5 461 70.7
Sopen02g038590 Solanum pennellii HOM05D005860 ORTHO05D006977 2.7e-99 366.7 489 67.9
Nitab4.5_0002887g0110 Nicotiana tabacum HOM05D005860 ORTHO05D006977 3.5e-99 366.3 461 70.9
PGSC0003DMG400020220 Solanum tuberosum HOM05D005860 ORTHO05D006977 3.5e-99 366.3 489 67.9
PGR083G1804 Punica granatum HOM05D005860 ORTHO05D006977 4.6e-99 365.9 453 55.4
CSS0015596 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 6.0e-99 365.5 483 69.8
Solyc02g093940.3 Solanum lycopersicum HOM05D005860 ORTHO05D006977 1.3e-98 364.4 489 67.7
TAR629G2046 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.3e-98 364.4 450 66.9
CANSAT64G0040 Cannabis sativa HOM05D005860 ORTHO05D006977 1.7e-98 364.0 460 69.1
CsaV3_6G042570 Cucumis sativus L. HOM05D005860 ORTHO05D006977 3.0e-98 363.2 449 75.5
Lj7A609T51 Lonicera japonica HOM05D005860 ORTHO05D006977 3.9e-98 362.8 456 69.3
Dinv19535 Davidia involucrata HOM05D005860 ORTHO05D006977 5.1e-98 362.5 470 67.4
CSS0028115 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 8.6e-98 361.7 458 72.3
MD17G1015100 Malus domestica HOM05D005860 ORTHO05D006977 1.1e-97 361.3 476 72.5
Actinidia30891 Actinidia chinensis HOM05D005860 ORTHO05D006977 3.3e-97 359.8 467 71.9
PSO063G3212 Papaver somniferum HOM05D005860 ORTHO05D006977 6.2e-96 355.5 445 69.7
Sc16g0003100 Simmondsia chinensis HOM05D005860 ORTHO05D006977 8.1e-96 355.1 479 68.3
Migut.K01447 Erythranthe guttata HOM05D005860 ORTHO05D006977 4.0e-95 352.8 465 67.1
ATR0686G114 Amborella trichopoda HOM05D005860 ORTHO05D006977 6.8e-95 352.1 449 69.0
FvH4_6g53060 Fragaria vesca HOM05D005860 ORTHO05D006977 6.8e-95 352.1 447 76.3
TWI56G1326 Tripterygium wilfordii HOM05D005860 ORTHO05D006977 1.2e-94 351.3 447 74.0
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 1.5e-94 350.9 456 71.7
SalBow1G3206 Salvia bowleyana HOM05D005860 ORTHO05D006977 4.4e-94 349.4 484 68.2
SalBow7G2829 Salvia bowleyana HOM05D005860 ORTHO05D006977 4.4e-94 349.4 484 68.2
PSO017G5933 Papaver somniferum HOM05D005860 ORTHO05D006977 5.8e-94 349.0 453 69.8
PSO478G3943 Papaver somniferum HOM05D005860 ORTHO05D006977 7.6e-94 348.6 453 68.9
FAN05G4081 Fragaria x ananassa HOM05D005860 ORTHO05D006977 2.2e-93 347.1 447 75.4
RcHm_v2.0_Chr2g0174841 Rosa chinensis HOM05D005860 ORTHO05D006977 1.9e-92 344.0 447 74.7
FAN09G0694 Fragaria x ananassa HOM05D005860 ORTHO05D006977 2.4e-92 343.6 447 75.4
THA.LOC104825612 Tarenaya hassleriana HOM05D005860 ORTHO05D006977 4.2e-92 342.8 483 65.2
Sed0015041 Sechium edule HOM05D005860 ORTHO05D006977 3.9e-90 336.3 471 61.4
FAN14G2391 Fragaria x ananassa HOM05D005860 ORTHO05D006977 2.8e-88 330.1 446 65.2
DCAR_021767 Daucus carota HOM05D005860 ORTHO05D006977 1.1e-87 328.2 439 72.0
SGA_v2.0_scaffold7G03541 Striga asiatica HOM05D005860 ORTHO05D006977 5.3e-87 325.9 444 64.9
A01p23060 Brassica napus HOM05D005860 ORTHO05D006977 1.5e-86 324.3 486 63.6
Hund24045 Selenicereus undatus HOM05D005860 ORTHO05D006977 2.6e-86 323.6 462 67.5
Thecc.08G160800 Theobroma cacao HOM05D005860 ORTHO05D006977 2.6e-86 323.6 374 77.3
AT4G14605 Arabidopsis thaliana HOM05D005860 ORTHO05D006977 4.4e-86 322.8 480 64.2
AL7G41520 Arabidopsis lyrata HOM05D005860 ORTHO05D006977 5.8e-86 322.4 484 63.4
Carub.0007s2760 Capsella rubella HOM05D005860 ORTHO05D006977 5.8e-86 322.4 480 63.5
Thhalv10025001m.g Eutrema salsugineum HOM05D005860 ORTHO05D006977 2.9e-85 320.1 482 63.9
BcaNung00353 Brassica carinata HOM05D005860 ORTHO05D006977 4.9e-85 319.3 484 63.2
BraA01t02219Z Brassica rapa HOM05D005860 ORTHO05D006977 6.4e-85 318.9 481 63.6
CARHR220830 Cardamine hirsuta HOM05D005860 ORTHO05D006977 8.4e-85 318.5 477 63.7
EL10Ac1g02122 Beta vulgaris HOM05D005860 ORTHO05D006977 1.9e-84 317.4 468 65.8
BcaC09g50132 Brassica carinata HOM05D005860 ORTHO05D006977 3.2e-84 316.6 482 63.3
Sp7g12700 Schrenkiella parvula HOM05D005860 ORTHO05D006977 4.2e-84 316.2 481 63.4
Ah.03g142080 Amaranthus hybridus HOM05D005860 ORTHO05D006977 1.3e-82 311.2 435 69.7
C01p28690 Brassica napus HOM05D005860 ORTHO05D006977 1.3e-82 311.2 484 62.6
BolC1t02795H Brassica oleracea HOM05D005860 ORTHO05D006977 1.3e-82 311.2 484 62.6
CiPaw.01G128900 Carya illinoinensis HOM05D005860 ORTHO05D006977 1.3e-82 311.2 471 68.4
Nn4g22386 Nelumbo nucifera HOM05D005860 ORTHO05D006977 6.6e-82 308.9 387 61.0
unitig_0.g543 Utricularia gibba HOM05D005860 ORTHO05D006977 1.5e-81 307.8 472 64.6
Aa31LG9G2730 Aethionema arabicum HOM05D005860 ORTHO05D006977 1.6e-80 304.3 477 62.9
ECA232G2764 Erigeron canadensis HOM05D005860 ORTHO05D006977 2.1e-80 303.9 480 61.5
Lju41A50T54 Lonicera japonica HOM05D005860 ORTHO05D006977 1.8e-79 300.8 453 62.7
HanXRQChr15g0486891 Helianthus annuus HOM05D005860 ORTHO05D006977 5.3e-79 299.3 484 63.0
AUR62043070 Chenopodium quinoa HOM05D005860 ORTHO05D006977 9.0e-79 298.5 434 68.9
AUR62032474 Chenopodium quinoa HOM05D005860 ORTHO05D006977 1.9e-76 290.8 434 67.3
CDE09G0687 Ceratophyllum demersum HOM05D005860 ORTHO05D006977 1.6e-75 287.7 468 57.1
Rhsim08G0044500 Rhododendron simsii HOM05D005860 ORTHO05D006977 4.0e-71 273.1 460 48.7
Zm00001eb246440 Zea mays HOM05D005860 ORTHO05D006977 2.0e-70 270.8 441 59.2
Gohir.D10G072200 Gossypium hirsutum HOM05D005860 ORTHO05D006977 2.3e-66 257.3 258 76.0
vmacro18326 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.6e-64 251.1 422 57.8
Rhsim08G0044400 Rhododendron simsii HOM05D005860 ORTHO05D006977 4.8e-64 249.6 431 58.5
Oeu050423.1 Olea europaea HOM05D005860 ORTHO05D006977 4.0e-63 246.5 223 62.3
Prupe.3G302700 Prunus persica HOM05D005860 ORTHO05D006977 5.3e-63 246.1 361 74.5
Rhsim08G0045000 Rhododendron simsii HOM05D005860 ORTHO05D006977 6.9e-63 245.7 459 59.3
Rhsim08G0044700 Rhododendron simsii HOM05D005860 ORTHO05D006977 3.4e-62 243.4 457 47.5
Cfa015733 Carpinus fangiana HOM05D005860 ORTHO05D006977 3.6e-51 206.8 154 70.8
Lsat_1_v5_gn_4_185440 Lactuca sativa HOM05D005860 ORTHO05D006977 1.6e-43 181.4 367 64.9
HPP92_024250 Vanilla planifolia HOM05D005860 ORTHO05D006977 3.6e-43 180.3 360 60.0
HPP92_024230 Vanilla planifolia HOM05D005860 ORTHO05D006977 1.3e-40 171.8 322 63.7
Haze_00763 Corylus avellana HOM05D005860 ORTHO05D006977 2.8e-40 170.6 363 47.1
Glyma.09G171766 Glycine max HOM05D005860 ORTHO05D006977 2.6e-38 164.1 149 91.3
ATR0686G162 Amborella trichopoda HOM05D005860 ORTHO05D006977 1.4e-36 158.3 360 37.2
Migut.C00523 Erythranthe guttata HOM05D005860 ORTHO05D006977 3.6e-35 153.7 121 70.2
Mapoly0029s0044 Marchantia polymorpha HOM05D005860 ORTHO05D006977 4.4e-33 146.7 413 44.8
FAN14G0528 Fragaria x ananassa HOM05D005860 ORTHO05D006977 9.7e-33 145.6 271 71.2
Rhsim08G0044900 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.7e-32 144.8 373 42.9
Os02g0602400 Oryza sativa ssp. japonica HOM05D005860 ORTHO05D006977 6.3e-32 142.9 268 53.7
Pp3c9_18330 Physcomitrium patens HOM05D005860 ORTHO05D006977 3.6e-27 127.1 426 47.7
vmacro18330 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 4.8e-24 116.7 115 55.7
ATR0609G011 Amborella trichopoda HOM05D005860 ORTHO05D006977 6.3e-24 116.3 148 58.8
Rhsim08G0044800 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.1e-20 105.5 85 69.4
TAR374G0650 Trochodendron aralioides HOM05D005860 ORTHO05D006977 3.0e-18 97.4 306 29.4
Pp3c15_12290 Physcomitrium patens HOM05D005860 ORTHO05D006977 1.5e-17 95.1 170 34.1
Sed0001458 Sechium edule HOM05D005860 ORTHO05D006977 4.4e-17 93.6 111 55.0
AagrBONN_evm.TU.Sc2ySwM_117.926 Anthoceros agrestis HOM05D000273 ORTHO05D006977 3.7e-16 90.5 158 36.1
HPP92_024251 Vanilla planifolia HOM05D005860 ORTHO05D006977 4.5e-14 83.6 99 48.5
TPR.G88 Trifolium pratense HOM05D005860 ORTHO05D006977 5.9e-14 83.2 59 66.1
vmacro18328 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.0e-13 82.4 65 67.7
TAR374G0834 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.6e-11 75.1 66 60.6
vmacro18327 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 3.7e-08 63.9 64 76.6
Mapoly0007s0012 Marchantia polymorpha HOM05D005860 ORTHO05D006977 6.3e-08 63.2 157 31.2
vmacro18329 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 8.3e-08 62.8 165 34.5
Potri.013G116700 Populus trichocarpa HOM05D002901 ORTHO05D003183 2.4e-07 61.2 93 34.4
CARHR139180 Cardamine hirsuta HOM05D002901 ORTHO05D003183 7.0e-07 59.7 93 34.4
Gohir.A02G108506 Gossypium hirsutum HOM05D002901 ORTHO05D003183 7.0e-07 59.7 93 34.4
Gohir.A02G108507 Gossypium hirsutum HOM05D002901 ORTHO05D003183 7.0e-07 59.7 93 34.4
Gohir.D03G069704 Gossypium hirsutum HOM05D002901 ORTHO05D003183 7.0e-07 59.7 93 34.4
Gorai.003G090600 Gossypium raimondii HOM05D002901 ORTHO05D003183 7.0e-07 59.7 93 34.4
Thecc.01G124400 Theobroma cacao HOM05D002901 ORTHO05D003183 7.0e-07 59.7 93 34.4
COL.COLO4_13997 Corchorus olitorius HOM05D002901 ORTHO05D003183 9.2e-07 59.3 93 34.4
Phvul.002G321600 Phaseolus vulgaris HOM05D002901 ORTHO05D003183 1.2e-06 58.9 93 33.3
SHI09181 Sapria himalayana HOM05D002901 ORTHO05D003183 1.2e-06 58.9 93 35.5
Thhalv10001406m.g Eutrema salsugineum HOM05D002901 ORTHO05D003183 1.6e-06 58.5 93 33.3
Sed0026481 Sechium edule HOM05D002901 ORTHO05D003183 1.6e-06 58.5 93 33.3
THA.LOC104804390 Tarenaya hassleriana HOM05D002901 ORTHO05D003183 1.6e-06 58.5 93 34.4
VMungo0251G0115 Vigna mungo HOM05D002901 ORTHO05D003183 1.6e-06 58.5 93 33.3
Sp4g26110 Schrenkiella parvula HOM05D002901 ORTHO05D003183 2.0e-06 58.2 93 33.3
ECA234G1179 Erigeron canadensis HOM05D000093 ORTHO05D001309 2.7e-06 57.8 92 33.7
AL4G42900 Arabidopsis lyrata HOM05D002901 ORTHO05D003183 3.5e-06 57.4 93 32.3
AT2G44020 Arabidopsis thaliana HOM05D002901 ORTHO05D003183 3.5e-06 57.4 93 32.3
Sabra13G0098800 Salix brachista HOM05D002901 ORTHO05D003183 3.5e-06 57.4 93 33.3
arahy.Tifrunner.gnm1.ann1.HA7VEA Arachis hypogaea HOM05D001631 ORTHO05D003183 4.5e-06 57.0 93 31.2
arahy.Tifrunner.gnm1.ann1.IVXM4E Arachis hypogaea HOM05D002901 ORTHO05D003183 4.5e-06 57.0 93 31.2
A05p04170 Brassica napus HOM05D002901 ORTHO05D003183 4.5e-06 57.0 93 31.2
BraA05t19403Z Brassica rapa HOM05D002901 ORTHO05D003183 4.5e-06 57.0 93 31.2
CSS0013111 Camellia sinensis var. sinensis HOM05D002901 ORTHO05D003183 4.5e-06 57.0 91 33.0
MELO3C026620.2 Cucumis melo HOM05D002901 ORTHO05D003183 4.5e-06 57.0 93 34.4
CsaV3_3G043110 Cucumis sativus L. HOM05D002901 ORTHO05D003183 4.5e-06 57.0 93 34.4
Manes.02G188300 Manihot esculenta HOM05D002901 ORTHO05D003183 4.5e-06 57.0 93 33.3
ClCG10G013530 Citrullus lanatus HOM05D002901 ORTHO05D003183 5.9e-06 56.6 93 34.4
RcHm_v2.0_Chr3g0488701 Rosa chinensis HOM05D002901 ORTHO05D003183 5.9e-06 56.6 93 33.3
Aa31LG1G25700 Aethionema arabicum HOM05D002901 ORTHO05D003183 7.8e-06 56.2 92 32.6
BcaB02g08924 Brassica carinata HOM05D002901 ORTHO05D003183 7.8e-06 56.2 93 31.2
CSS0006169 Camellia sinensis var. sinensis HOM05D002901 ORTHO05D003183 7.8e-06 56.2 91 33.0
CiPaw.16G005800 Carya illinoinensis HOM05D002901 ORTHO05D003183 7.8e-06 56.2 93 32.3
HanXRQChr09g0245761 Helianthus annuus HOM05D002901 ORTHO05D003183 7.8e-06 56.2 92 32.6
Hma1.2p1_0276F.1_g111320 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 7.8e-06 56.2 93 32.3
Lalb_Chr05g0222181 Lupinus albus HOM05D002901 ORTHO05D003183 7.8e-06 56.2 52 48.1


User provided reference genes

Program Settings