Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 8.3e-263 909.8 461 100.0
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 3.7e-202 708.4 504 75.0
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 4.7e-165 585.1 461 68.3
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 3.1e-161 572.4 465 68.2
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 5.1e-87 325.9 465 46.9
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 1.8e-84 317.4 472 46.4
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 2.1e-80 303.9 477 44.0
Ca_25286_v3 Cicer arietinum L. HOM05D008057 ORTHO05D003476 1.3e-77 294.7 395 50.4
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 3.7e-77 293.1 473 42.5
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 1.7e-74 284.3 473 41.6
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 4.5e-67 259.6 482 41.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 8.8e-55 218.8 473 36.6
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 1.9e-25 121.3 206 39.8
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 6.8e-23 112.8 213 34.7
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 8.9e-23 112.5 460 26.5
TWI81G0899 Tripterygium wilfordii HOM05D008057 ORTHO05D003476 1.7e-21 108.2 289 30.4
Psat6g139960 Pisum sativum HOM05D003187 ORTHO05D003630 2.2e-21 107.8 182 42.9
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 1.4e-20 105.1 434 28.8
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 1.9e-20 104.8 122 47.5
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 4.1e-20 103.6 442 26.5
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 6.0e-19 99.8 125 44.8
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 1.3e-18 98.6 151 42.4
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 1.7e-18 98.2 157 36.9
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 3.0e-18 97.4 195 34.9
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 3.0e-18 97.4 203 34.5
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 5.6e-17 93.2 173 34.1
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.6e-16 91.7 171 36.3
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.4e-15 87.8 129 41.9
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 4.0e-15 87.0 182 31.9
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 8.9e-15 85.9 328 27.7
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 8.9e-15 85.9 253 28.5
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 8.9e-15 85.9 113 43.4
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 1.2e-14 85.5 325 28.9
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.2e-14 85.5 115 41.7
Psat5g043880 Pisum sativum HOM05D026839 ORTHO05D003476 1.5e-14 85.1 215 35.8
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 3.4e-14 84.0 295 31.9
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 7.6e-14 82.8 76 50.0
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 1.3e-13 82.0 222 29.7
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 2.9e-13 80.9 113 37.2
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.9e-13 80.9 117 37.6
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 2.9e-13 80.9 117 37.6
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 3.8e-13 80.5 114 42.1
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 4.9e-13 80.1 91 47.3
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 4.9e-13 80.1 79 48.1
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 4.9e-13 80.1 146 34.2
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 1.1e-12 79.0 115 37.4
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.1e-12 79.0 131 35.9
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 1.9e-12 78.2 109 40.4
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.9e-12 78.2 437 24.9
AUR62033080 Chenopodium quinoa HOM05D008057 ORTHO05D003476 2.4e-12 77.8 98 38.8
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 5.4e-12 76.6 437 24.7
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 5.4e-12 76.6 91 39.6
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 7.1e-12 76.3 128 39.8
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 9.2e-12 75.9 123 36.6
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 9.2e-12 75.9 100 45.0
AUR62042766 Chenopodium quinoa HOM05D008057 ORTHO05D003476 1.2e-11 75.5 89 47.2
Zm00001eb248340 Zea mays HOM05D046263 ORTHO05D003476 1.2e-11 75.5 72 48.6
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 4.6e-11 73.6 419 26.5
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.3e-10 72.0 65 49.2
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 2.3e-10 71.2 402 23.6
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 2.3e-10 71.2 92 42.4
Oeu050291.1 Olea europaea HOM05D008057 ORTHO05D003476 3.0e-10 70.9 189 30.7
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 3.0e-10 70.9 82 41.5
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 3.0e-10 70.9 80 41.2
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 3.9e-10 70.5 80 43.8
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 3.9e-10 70.5 65 52.3
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 8.7e-10 69.3 443 24.2
HanXRQChr08g0226101 Helianthus annuus HOM05D008057 ORTHO05D003476 1.1e-09 68.9 106 40.6
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 1.1e-09 68.9 56 53.6
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 1.1e-09 68.9 236 29.2
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 1.5e-09 68.6 409 25.2
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 1.5e-09 68.6 94 40.4
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 1.9e-09 68.2 99 40.4
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 1.9e-09 68.2 236 29.2
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 2.5e-09 67.8 121 33.9
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 2.5e-09 67.8 417 24.9
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 2.5e-09 67.8 444 24.8
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 3.3e-09 67.4 115 38.3
Sc12g0007990 Simmondsia chinensis HOM05D008057 ORTHO05D003476 3.3e-09 67.4 70 50.0
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 5.6e-09 66.6 78 46.2
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 9.6e-09 65.9 166 26.5
Ah.09g232210 Amaranthus hybridus HOM05D002613 ORTHO05D003140 1.6e-08 65.1 57 47.4
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 1.6e-08 65.1 112 34.8
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 2.1e-08 64.7 65 47.7
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 2.8e-08 64.3 176 26.7
Lsat_1_v5_gn_8_540 Lactuca sativa HOM05D008057 ORTHO05D003476 2.8e-08 64.3 141 31.9
PSO063G6649 Papaver somniferum HOM05D045975 ORTHO05D003476 2.8e-08 64.3 429 24.7
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 6.2e-08 63.2 131 29.0
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 6.2e-08 63.2 136 27.9
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 8.1e-08 62.8 373 23.1
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 1.1e-07 62.4 88 34.1
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 1.1e-07 62.4 99 34.3
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.8e-07 61.6 57 49.1
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 2.4e-07 61.2 72 36.1
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 3.1e-07 60.8 62 41.9
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 4.0e-07 60.5 89 31.5
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 4.0e-07 60.5 62 38.7
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 4.0e-07 60.5 70 37.1
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 5.2e-07 60.1 91 31.9
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 5.2e-07 60.1 273 26.0
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 5.2e-07 60.1 296 27.4
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 5.2e-07 60.1 72 34.7
vmacro12841 Vaccinium macrocarpon HOM05D008057 ORTHO05D003476 6.9e-07 59.7 78 47.4
HPP92_025600 Vanilla planifolia HOM05D061565 ORTHO05D003476 6.9e-07 59.7 61 47.5
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 9.0e-07 59.3 64 32.8
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 9.0e-07 59.3 64 32.8
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 9.0e-07 59.3 64 32.8
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 1.2e-06 58.9 150 27.3
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.2e-06 58.9 79 48.1
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.5e-06 58.5 62 35.5
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 1.5e-06 58.5 75 32.0
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.5e-06 58.5 64 32.8
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.5e-06 58.5 72 31.9
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 2.0e-06 58.2 136 25.7
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 2.0e-06 58.2 111 27.9
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 2.0e-06 58.2 96 27.1
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 2.0e-06 58.2 62 37.1
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 2.0e-06 58.2 79 31.6
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 2.0e-06 58.2 112 28.6
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 2.0e-06 58.2 62 37.1
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 2.0e-06 58.2 177 26.0
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 2.6e-06 57.8 152 28.3
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 2.6e-06 57.8 84 33.3
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 2.6e-06 57.8 62 35.5
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 2.6e-06 57.8 115 29.6
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 3.4e-06 57.4 104 30.8
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 3.4e-06 57.4 62 33.9
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 3.4e-06 57.4 65 32.3
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 3.4e-06 57.4 65 32.3
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 3.4e-06 57.4 62 35.5
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 4.4e-06 57.0 152 27.6
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 4.4e-06 57.0 253 27.7
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 4.4e-06 57.0 62 35.5
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 4.4e-06 57.0 62 38.7
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 5.8e-06 56.6 142 27.5
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 5.8e-06 56.6 70 31.4
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 5.8e-06 56.6 153 26.1
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 7.6e-06 56.2 132 25.8
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 7.6e-06 56.2 64 32.8
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 7.6e-06 56.2 62 35.5
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 7.6e-06 56.2 259 23.9
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 9.9e-06 55.8 91 30.8
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 9.9e-06 55.8 62 35.5
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 9.9e-06 55.8 62 32.3
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 9.9e-06 55.8 130 29.2
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 9.9e-06 55.8 117 27.4


User provided reference genes

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