Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G129700 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 1.2e-88 329.7 161 100.0
Phvul.004G129600 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 2.1e-59 232.6 217 59.9
VMungo0464G1579 Vigna mungo HOM05D000535 ORTHO05D000427 2.6e-54 215.7 218 56.0
Phvul.004G129800 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 3.1e-47 192.2 218 51.8
Phvul.004G129900 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 1.7e-45 186.4 218 50.0
Phvul.004G129500 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 3.3e-41 172.2 215 48.8
Glyma.09G155500 Glycine max HOM05D000535 ORTHO05D000427 3.7e-40 168.7 217 47.0
Phvul.004G130000 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 7.9e-35 151.0 183 49.2
arahy.Tifrunner.gnm1.ann1.9N9F55 Arachis hypogaea HOM05D000535 ORTHO05D000427 1.5e-33 146.7 197 46.2
arahy.Tifrunner.gnm1.ann1.U2UX9Q Arachis hypogaea HOM05D000535 ORTHO05D000427 4.3e-33 145.2 204 45.6
VMungo0464G2067 Vigna mungo HOM05D000535 ORTHO05D000427 2.2e-32 142.9 210 44.3
VMungo0464G1632 Vigna mungo HOM05D000535 ORTHO05D000427 8.2e-32 141.0 181 45.9
Lalb_Chr01g0008701 Lupinus albus HOM05D000535 ORTHO05D000427 2.4e-31 139.4 220 42.3
Lj2g0020121 Lotus japonicus HOM05D000535 ORTHO05D000427 4.1e-31 138.7 209 45.5
Ca_25239_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 6.9e-31 137.9 209 43.1
Psat0s2953g0120 Pisum sativum HOM05D000535 ORTHO05D000427 1.7e-29 133.3 222 41.4
Medtr6g059730 Medicago truncatula HOM05D000535 ORTHO05D000427 7.2e-28 127.9 217 41.9
TPR.G5828 Trifolium pratense HOM05D000535 ORTHO05D000427 3.6e-27 125.6 222 38.7
Psat1g112520 Pisum sativum HOM05D000535 ORTHO05D000427 1.8e-26 123.2 218 37.6
Psat0s2953g0040 Pisum sativum HOM05D000535 ORTHO05D000427 4.3e-25 118.6 228 38.2
Medtr6g059680 Medicago truncatula HOM05D000535 ORTHO05D000427 6.3e-24 114.8 219 37.4
VMungo0464G0329 Vigna mungo HOM05D000535 ORTHO05D000427 1.1e-23 114.0 213 38.0
Psat1g112600 Pisum sativum HOM05D000535 ORTHO05D000427 1.1e-20 104.0 197 34.5
Medtr6g065460 Medicago truncatula HOM05D000535 ORTHO05D000427 6.1e-19 98.2 208 37.0
TPR.G5811 Trifolium pratense HOM05D000535 ORTHO05D000427 6.1e-19 98.2 227 34.8
Phvul.004G130500 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 6.3e-16 88.2 201 34.3
Psat0s2953g0080 Pisum sativum HOM05D000535 ORTHO05D000427 1.1e-15 87.4 130 44.6
Medtr6g059530 Medicago truncatula HOM05D000535 ORTHO05D000427 1.4e-15 87.0 203 34.0
Medtr6g059410 Medicago truncatula HOM05D000535 ORTHO05D000427 6.9e-15 84.7 203 34.5
Medtr6g059650 Medicago truncatula HOM05D000535 ORTHO05D000427 1.2e-14 84.0 85 52.9
Ca_28260_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 2.0e-14 83.2 172 35.5
Medtr6g017225 Medicago truncatula HOM05D000535 ORTHO05D000427 1.0e-13 80.9 72 56.9
Psat0s2953g0160 Pisum sativum HOM05D000535 ORTHO05D000427 1.3e-13 80.5 215 32.6
Phvul.004G130400 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 6.5e-13 78.2 194 34.0
Medtr6g065570 Medicago truncatula HOM05D000535 ORTHO05D000427 1.1e-12 77.4 65 53.8
BolC2t09133H Brassica oleracea HOM05D000535 ORTHO05D000427 1.9e-12 76.6 201 32.3
Psat0s4676g0040 Pisum sativum HOM05D000535 ORTHO05D000427 2.5e-12 76.3 219 29.2
Medtr3g463590 Medicago truncatula HOM05D000535 ORTHO05D000427 5.5e-12 75.1 196 32.7
TPR.G3980 Trifolium pratense HOM05D000535 ORTHO05D000427 5.5e-12 75.1 74 52.7
A02p18600 Brassica napus HOM05D000535 ORTHO05D000427 9.4e-12 74.3 209 32.5
BraA02t06900Z Brassica rapa HOM05D000535 ORTHO05D000427 2.7e-11 72.8 209 32.5
Atru.chr6.1195 Acer truncatum HOM05D000535 ORTHO05D000427 4.7e-11 72.0 137 35.0
TPR.G5846 Trifolium pratense HOM05D000535 ORTHO05D000427 6.1e-11 71.6 216 30.1
Atru.chr6.1198 Acer truncatum HOM05D000535 ORTHO05D000427 1.0e-10 70.9 130 34.6
Psat1g116360 Pisum sativum HOM05D000535 ORTHO05D000427 1.0e-10 70.9 199 27.1
TPR.G8847 Trifolium pratense HOM05D000535 ORTHO05D000427 2.3e-10 69.7 125 41.6
Medtr6g059810 Medicago truncatula HOM05D000535 ORTHO05D000427 3.9e-10 68.9 208 29.8
Glyma.08G341300 Glycine max HOM05D000535 ORTHO05D011300 6.7e-10 68.2 206 32.0
arahy.Tifrunner.gnm1.ann1.4K4Y7I Arachis hypogaea HOM05D000535 ORTHO05D000427 8.8e-10 67.8 63 58.7
Lj2g0009599 Lotus japonicus HOM05D000535 ORTHO05D000427 1.1e-09 67.4 226 33.2
Atru.chr6.1204 Acer truncatum HOM05D000535 ORTHO05D000427 1.5e-09 67.0 130 33.8
Medtr6g044810 Medicago truncatula HOM05D000535 ORTHO05D000427 1.5e-09 67.0 130 34.6
VMungo0464G1765 Vigna mungo HOM05D010343 ORTHO05D011300 1.5e-09 67.0 97 44.3
BcaC08g46745 Brassica carinata HOM05D000535 ORTHO05D000427 3.3e-09 65.9 80 42.5
GSVIVG01012936001 Vitis vinifera HOM05D000535 ORTHO05D000427 3.3e-09 65.9 209 30.6
C02p30960 Brassica napus HOM05D000535 ORTHO05D000427 4.4e-09 65.5 76 48.7
Ca_26737_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 7.4e-09 64.7 77 46.8
Migut.O00272 Erythranthe guttata HOM05D000535 ORTHO05D000427 7.4e-09 64.7 130 33.1
Medtr1g057110 Medicago truncatula HOM05D000535 ORTHO05D000427 9.7e-09 64.3 192 32.3
Atru.chr10.1155 Acer truncatum HOM05D000535 ORTHO05D000427 1.3e-08 63.9 98 37.8
Atru.chr10.1154 Acer truncatum HOM05D000535 ORTHO05D000427 1.7e-08 63.5 98 37.8
BcaB03g15040 Brassica carinata HOM05D000535 ORTHO05D000427 1.7e-08 63.5 77 42.9
Medtr6g044780 Medicago truncatula HOM05D000535 ORTHO05D000427 1.7e-08 63.5 91 42.9
Medtr6g045097 Medicago truncatula HOM05D000535 ORTHO05D000427 1.7e-08 63.5 91 42.9
SalBow5G3406 Salvia bowleyana HOM05D000535 ORTHO05D000427 2.8e-08 62.8 67 46.3
VMungo0464G1990 Vigna mungo HOM05D000535 ORTHO05D000427 2.8e-08 62.8 197 28.9
C02p30760 Brassica napus HOM05D000535 ORTHO05D000427 4.8e-08 62.0 71 46.5
C06p47420 Brassica napus HOM05D000535 ORTHO05D000427 4.8e-08 62.0 80 41.2
BolC2t09143H Brassica oleracea HOM05D000535 ORTHO05D000427 4.8e-08 62.0 77 45.5
BolC6t39780H Brassica oleracea HOM05D000535 ORTHO05D000427 4.8e-08 62.0 80 41.2
Duzib128G0529 Durio zibethinus HOM05D000535 ORTHO05D000427 4.8e-08 62.0 137 29.9
C02p30780 Brassica napus HOM05D000535 ORTHO05D000427 6.3e-08 61.6 71 43.7
BraA02t06895Z Brassica rapa HOM05D000535 ORTHO05D000427 6.3e-08 61.6 71 43.7
Lalb_Chr03g0033261 Lupinus albus HOM05D000535 ORTHO05D000427 6.3e-08 61.6 202 25.7
Phvul.004G130200 Phaseolus vulgaris HOM05D013217 ORTHO05D000427 1.1e-07 60.8 206 30.1
MSTRG.11530 Avicennia marina HOM05D000535 ORTHO05D000427 1.4e-07 60.5 138 29.0
Medtr6g066190 Medicago truncatula HOM05D000535 ORTHO05D000427 1.4e-07 60.5 72 48.6
A07p39220 Brassica napus HOM05D000535 ORTHO05D000427 1.8e-07 60.1 85 41.2
BolC6t39785H Brassica oleracea HOM05D000535 ORTHO05D000427 1.8e-07 60.1 71 46.5
BraA07t31472Z Brassica rapa HOM05D000535 ORTHO05D000427 1.8e-07 60.1 85 41.2
VMungo1383G2316 Vigna mungo HOM05D010343 ORTHO05D011300 1.8e-07 60.1 109 38.5
BcaB03g15042 Brassica carinata HOM05D000535 ORTHO05D000427 2.4e-07 59.7 76 44.7
A07p39240 Brassica napus HOM05D000535 ORTHO05D000427 2.4e-07 59.7 155 33.5
Medtr6g009650 Medicago truncatula HOM05D000535 ORTHO05D000427 2.4e-07 59.7 198 27.3
Medtr6g045433 Medicago truncatula HOM05D000535 ORTHO05D000427 2.4e-07 59.7 140 35.0
A02p18680 Brassica napus HOM05D000535 ORTHO05D000427 3.1e-07 59.3 130 36.9
BraA02t06910Z Brassica rapa HOM05D000535 ORTHO05D000427 3.1e-07 59.3 130 36.9
TWI12G0051 Tripterygium wilfordii HOM05D000535 ORTHO05D000427 3.1e-07 59.3 88 37.5
C06p47450 Brassica napus HOM05D000535 ORTHO05D000427 4.1e-07 58.9 71 46.5
Ciclev10023287m.g Citrus clementina HOM05D000535 ORTHO05D000427 4.1e-07 58.9 136 31.6
Glyma.08G341000 Glycine max HOM05D000535 ORTHO05D011300 4.1e-07 58.9 85 41.2
Glyma.08G341400 Glycine max HOM05D000535 ORTHO05D011300 4.1e-07 58.9 117 37.6
HanXRQChr16g0506311 Helianthus annuus HOM05D000535 ORTHO05D000427 4.1e-07 58.9 185 29.7
HanXRQChr16g0506331 Helianthus annuus HOM05D000535 ORTHO05D000427 4.1e-07 58.9 185 29.7
Lj5g0017298 Lotus japonicus HOM05D000535 ORTHO05D000427 4.1e-07 58.9 80 46.2
Atru.chr10.1140 Acer truncatum HOM05D000535 ORTHO05D000427 5.3e-07 58.5 98 36.7
Atru.chr10.1153 Acer truncatum HOM05D000535 ORTHO05D000427 5.3e-07 58.5 98 36.7
arahy.Tifrunner.gnm1.ann1.91JQUG Arachis hypogaea HOM05D000535 ORTHO05D000427 5.3e-07 58.5 53 56.6
MSTRG.11534 Avicennia marina HOM05D000535 ORTHO05D000427 5.3e-07 58.5 117 29.1
DCAR_011409 Daucus carota HOM05D000535 ORTHO05D000427 5.3e-07 58.5 95 36.8
TWI15G0556 Tripterygium wilfordii HOM05D000535 ORTHO05D000427 5.3e-07 58.5 89 37.1
Glyma.16G206100 Glycine max HOM05D000535 ORTHO05D000427 7.0e-07 58.2 233 29.2
Sabra17G0126000 Salix brachista HOM05D000535 ORTHO05D000427 7.0e-07 58.2 108 35.2
TAR374G0418 Trochodendron aralioides HOM05D000535 ORTHO05D000427 7.0e-07 58.2 132 29.5
MSTRG.11561 Avicennia marina HOM05D000535 ORTHO05D000427 9.1e-07 57.8 203 30.0
Cpa.g.sc2.361 Carica papaya HOM05D000535 ORTHO05D000427 9.1e-07 57.8 83 42.2
BcaB03g15046 Brassica carinata HOM05D000535 ORTHO05D000427 1.2e-06 57.4 67 41.8
BcaC08g46753 Brassica carinata HOM05D000535 ORTHO05D000427 1.2e-06 57.4 76 43.4
C06p47490 Brassica napus HOM05D000535 ORTHO05D000427 1.2e-06 57.4 76 43.4
BolC6t39788H Brassica oleracea HOM05D000535 ORTHO05D000427 1.2e-06 57.4 76 43.4
Ciclev10022124m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.2e-06 57.4 136 31.6
Glyma.08G342200 Glycine max HOM05D000535 ORTHO05D011300 1.2e-06 57.4 135 31.1
Glyma.08G342300 Glycine max HOM05D000535 ORTHO05D011300 1.2e-06 57.4 86 40.7
Glyma.16G206300 Glycine max HOM05D000535 ORTHO05D000427 1.2e-06 57.4 241 28.6
Lj9C411T7 Lonicera japonica HOM05D000535 ORTHO05D000427 1.2e-06 57.4 83 36.1
Potri.017G153400 Populus trichocarpa HOM05D000535 ORTHO05D000427 1.2e-06 57.4 107 36.4
BolC2t09149H Brassica oleracea HOM05D000535 ORTHO05D000427 1.6e-06 57.0 130 36.2
Ciclev10022129m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.6e-06 57.0 136 30.9
DCAR_011413 Daucus carota HOM05D000535 ORTHO05D000427 1.6e-06 57.0 201 28.9
GSVIVG01012922001 Vitis vinifera HOM05D000535 ORTHO05D000427 1.6e-06 57.0 95 37.9
Glyma.18G191400 Glycine max HOM05D010343 ORTHO05D011300 2.0e-06 56.6 115 37.4
SGA_v2.0_scaffold25G10739 Striga asiatica HOM05D000535 ORTHO05D000427 2.0e-06 56.6 201 24.9
TAR374G0927 Trochodendron aralioides HOM05D000535 ORTHO05D000427 2.0e-06 56.6 132 28.8
BraA07t31474Z Brassica rapa HOM05D000535 ORTHO05D000427 2.6e-06 56.2 76 42.1
Duzib128G1043 Durio zibethinus HOM05D000535 ORTHO05D000427 3.5e-06 55.8 86 36.0
Glyma.08G341500 Glycine max HOM05D010343 ORTHO05D011300 3.5e-06 55.8 123 36.6
Medtr6g009563 Medicago truncatula HOM05D000535 ORTHO05D000427 3.5e-06 55.8 77 41.6
Psat1g008000 Pisum sativum HOM05D000535 ORTHO05D000427 3.5e-06 55.8 121 33.9
Potri.017G153466 Populus trichocarpa HOM05D000535 ORTHO05D000427 3.5e-06 55.8 107 36.4
A07p39270 Brassica napus HOM05D000535 ORTHO05D000427 4.5e-06 55.5 76 40.8
COL.COLO4_08721 Corchorus olitorius HOM05D000535 ORTHO05D000427 4.5e-06 55.5 95 38.9
Glyma.01G095000 Glycine max HOM05D000535 ORTHO05D011300 4.5e-06 55.5 114 33.3
Glyma.08G341100 Glycine max HOM05D000535 ORTHO05D011300 4.5e-06 55.5 72 45.8
Gohir.A05G392000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 4.5e-06 55.5 86 36.0
Gohir.D04G025100 Gossypium hirsutum HOM05D000535 ORTHO05D000427 4.5e-06 55.5 86 36.0
Gorai.012G027700 Gossypium raimondii HOM05D000535 ORTHO05D000427 4.5e-06 55.5 86 36.0
HanXRQChr05g0161361 Helianthus annuus HOM05D000535 ORTHO05D000427 4.5e-06 55.5 186 29.0
BcaB03g15041 Brassica carinata HOM05D000535 ORTHO05D000427 5.9e-06 55.1 55 45.5
BcaB03g15045 Brassica carinata HOM05D000535 ORTHO05D000427 5.9e-06 55.1 85 40.0
Cpa.g.sc8.317 Carica papaya HOM05D000535 ORTHO05D000427 5.9e-06 55.1 75 41.3
Dinv04608 Davidia involucrata HOM05D000535 ORTHO05D000427 5.9e-06 55.1 65 40.0
Duzib268G0791 Durio zibethinus HOM05D000535 ORTHO05D000427 5.9e-06 55.1 88 39.8
Glyma.01G095232 Glycine max HOM05D010343 ORTHO05D011300 5.9e-06 55.1 109 35.8
Gohir.A05G392100 Gossypium hirsutum HOM05D000535 ORTHO05D000427 5.9e-06 55.1 103 29.1
Lj5P167T32 Lonicera japonica HOM05D000535 ORTHO05D000427 5.9e-06 55.1 70 40.0
VMungo0464G1147 Vigna mungo HOM05D000535 ORTHO05D000427 5.9e-06 55.1 82 36.6
Glyma.01G096200 Glycine max HOM05D000535 ORTHO05D011300 7.7e-06 54.7 205 29.3
Glyma.08G341700 Glycine max HOM05D000535 ORTHO05D011300 7.7e-06 54.7 126 32.5


User provided reference genes

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