Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 0.0e+00 1719.1 840 100.0
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 0.0e+00 1440.2 841 84.1
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 0.0e+00 1363.6 1069 67.6
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 0.0e+00 1249.6 740 82.8
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 0.0e+00 1243.4 856 72.2
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 0.0e+00 1243.4 851 72.6
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 0.0e+00 1225.3 850 70.9
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 0.0e+00 1215.3 852 71.1
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 0.0e+00 1214.9 840 71.3
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 0.0e+00 1204.1 840 71.5
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 0.0e+00 1199.1 851 70.0
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 0.0e+00 1078.9 855 64.8
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 0.0e+00 1075.8 858 63.9
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 2.9e-311 1071.6 858 63.6
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.2e-268 928.7 791 60.9
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.9e-266 922.2 739 63.5
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 7.8e-259 897.5 903 52.6
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 3.6e-256 888.6 910 52.5
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 2.3e-250 869.4 861 54.4
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 1.4e-247 860.1 854 51.9
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 2.3e-247 859.4 912 50.4
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 4.1e-244 848.6 855 51.7
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 3.5e-243 845.5 903 51.1
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 4.4e-238 828.6 512 81.6
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 1.4e-236 823.5 927 48.4
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.6e-235 820.1 927 48.4
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 1.7e-234 816.6 886 48.5
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 2.8e-232 809.3 886 49.5
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.1e-231 807.4 918 48.0
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 4.2e-228 795.4 899 48.6
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 5.4e-228 795.0 891 48.0
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 5.4e-228 795.0 897 48.9
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 2.1e-227 793.1 840 50.5
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 4.6e-227 792.0 867 48.1
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 3.0e-226 789.3 853 50.5
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 6.6e-226 788.1 891 47.7
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 4.3e-225 785.4 891 47.7
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 4.3e-225 785.4 900 48.2
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 5.6e-225 785.0 784 53.1
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 9.6e-225 784.3 915 46.9
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 2.2e-221 773.1 875 47.0
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 4.3e-217 758.8 872 46.9
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 1.3e-216 757.3 1112 41.6
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 2.6e-214 749.6 1112 40.8
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 4.2e-212 742.3 874 47.6
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 6.0e-211 738.4 905 44.5
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 8.2e-208 728.0 905 44.8
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 3.1e-207 726.1 883 44.8
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 6.9e-207 724.9 875 44.2
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 1.3e-205 720.7 1105 38.9
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 3.8e-205 719.2 858 47.3
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 5.0e-205 718.8 926 42.2
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 6.5e-205 718.4 906 44.0
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 1.4e-204 717.2 902 43.7
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 2.5e-204 716.5 903 43.7
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 4.2e-204 715.7 902 43.6
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 5.5e-204 715.3 1118 39.0
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 9.3e-204 714.5 902 43.6
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 1.2e-203 714.1 906 43.6
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 2.1e-203 713.4 885 43.8
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 4.6e-203 712.2 895 45.0
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 3.9e-202 709.1 888 43.8
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 5.1e-202 708.8 906 43.7
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 7.4e-201 704.9 872 44.5
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 7.4e-201 704.9 910 42.5
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 6.9e-199 698.4 551 63.2
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 1.7e-197 693.7 1099 37.6
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 2.9e-197 693.0 889 42.7
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 2.5e-196 689.9 876 46.2
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 2.5e-196 689.9 1097 38.7
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 9.4e-196 688.0 901 42.7
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 9.4e-188 661.4 873 43.5
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 1.5e-185 654.1 837 44.1
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 1.4e-183 647.5 846 43.6
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 9.1e-183 644.8 872 42.4
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 7.7e-182 641.7 842 43.1
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 1.4e-178 630.9 1081 35.3
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 1.4e-178 630.9 798 44.4
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.3e-176 624.4 903 40.4
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.7e-176 624.0 651 51.3
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 3.1e-175 619.8 841 42.9
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.7e-173 614.0 775 44.0
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 3.4e-169 599.7 765 45.0
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 4.1e-167 592.8 743 45.8
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 1.0e-165 588.2 622 50.5
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 1.5e-164 584.3 916 39.2
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 2.4e-159 567.0 966 34.5
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 3.5e-158 563.1 1060 35.2
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 7.7e-158 562.0 826 41.0
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.5e-153 547.7 748 41.8
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 9.2e-151 538.5 1058 33.9
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 3.0e-149 533.5 686 42.3
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.5e-148 531.2 1022 33.1
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 5.8e-137 492.7 986 33.1
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 1.7e-133 481.1 493 52.5
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 4.7e-131 473.0 501 48.3
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 5.4e-127 459.5 542 46.5
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 7.8e-126 455.7 593 42.3
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 2.4e-122 444.1 710 39.7
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 4.9e-120 436.4 851 34.9
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 2.8e-115 420.6 955 31.6
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 3.1e-114 417.2 953 29.8
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 4.6e-110 403.3 480 45.6
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.5e-105 386.7 586 40.6
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 7.1e-103 379.4 597 37.0
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 2.8e-99 367.5 932 30.2
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 4.2e-95 353.6 945 29.4
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 3.1e-90 337.4 1198 24.7
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 8.7e-85 319.3 385 44.9
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 6.3e-83 313.2 465 39.4
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 4.2e-71 273.9 445 37.3
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 4.4e-68 263.8 362 39.0
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 1.4e-66 258.8 251 55.0
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 3.2e-63 247.7 943 24.8
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 7.5e-60 236.5 674 28.0
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 4.1e-58 230.7 305 43.3
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 2.5e-55 221.5 367 36.5
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 4.7e-54 217.2 156 64.1
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 1.8e-53 215.3 211 54.0
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 1.2e-52 212.6 209 52.2
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.7e-49 201.4 167 56.9
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 7.7e-49 199.9 159 56.0
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 5.5e-47 193.7 268 41.8
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 2.2e-43 181.8 168 50.0
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 5.4e-42 177.2 146 56.2
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 7.0e-42 176.8 157 51.6
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 4.1e-34 151.0 787 23.0
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 2.0e-33 148.7 408 30.1
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 4.4e-28 131.0 85 75.3
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 2.4e-26 125.2 108 55.6
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 6.0e-25 120.6 128 49.2
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 1.6e-22 112.5 91 51.6
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 7.5e-20 103.6 82 53.7
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.5e-15 89.4 112 45.5
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 2.1e-09 68.9 211 27.5
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 3.3e-07 61.6 108 33.3


User provided reference genes

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