Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 0.0e+00 1463.0 746 100.0
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 3.3e-301 1038.1 781 76.8
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 8.1e-292 1006.9 776 74.7
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 5.4e-211 738.4 755 62.4
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 1.0e-201 707.6 741 60.1
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 7.6e-157 558.5 777 52.4
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 6.4e-156 555.4 765 53.5
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 1.6e-154 550.8 760 51.4
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 3.8e-148 529.6 748 51.1
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 2.7e-146 523.5 750 51.9
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 7.6e-141 505.4 795 47.8
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 6.5e-140 502.3 748 49.3
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 5.5e-139 499.2 724 51.9
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 1.4e-134 484.6 273 91.6
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 4.5e-133 479.6 742 50.3
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 1.5e-128 464.5 757 48.1
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 4.3e-128 463.0 773 48.0
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 1.3e-127 461.5 737 46.0
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 2.9e-124 450.3 744 47.0
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 2.2e-119 434.1 767 45.9
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 1.4e-118 431.4 263 84.8
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 5.3e-118 429.5 769 45.0
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 7.2e-115 419.1 726 45.5
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 5.2e-113 412.9 735 45.6
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 2.9e-108 397.1 742 45.6
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 4.2e-107 393.3 767 45.0
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 5.5e-107 392.9 730 45.8
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 6.1e-106 389.4 732 43.7
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 8.8e-105 385.6 743 44.0
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 1.5e-104 384.8 734 43.7
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.3e-103 381.7 740 41.9
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.7e-103 381.3 741 42.5
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 6.3e-103 379.4 769 42.7
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 6.3e-103 379.4 743 42.7
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.1e-102 378.6 741 42.6
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.4e-102 378.3 743 42.5
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 4.1e-102 376.7 788 43.1
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.4e-102 376.3 743 42.4
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 2.7e-101 374.0 754 43.4
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 2.2e-100 370.9 743 42.3
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.2e-99 367.1 621 46.2
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 4.2e-99 366.7 772 44.4
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 5.5e-99 366.3 687 45.7
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 7.2e-99 365.9 711 43.5
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 3.6e-98 363.6 695 44.2
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 7.5e-96 355.9 646 45.2
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 3.1e-94 350.5 735 39.2
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 9.2e-94 349.0 753 39.6
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 4.5e-93 346.7 785 39.4
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.0e-92 343.2 781 39.7
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 2.5e-91 340.9 740 41.4
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 9.5e-91 339.0 771 39.8
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 8.0e-90 335.9 762 39.4
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.2e-88 332.0 781 39.1
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 2.6e-88 330.9 709 41.7
arahy.Tifrunner.gnm1.ann1.3X1084 Arachis hypogaea HOM05D003765 ORTHO05D004561 8.3e-87 325.9 808 40.1
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 4.7e-82 310.1 731 39.1
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 3.4e-80 303.9 739 39.1
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 3.4e-80 303.9 830 38.4
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 4.9e-79 300.1 754 38.2
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 2.4e-78 297.7 824 36.2
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 5.4e-78 296.6 739 38.8
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 3.5e-77 293.9 500 47.2
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 6.0e-77 293.1 795 37.5
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 2.3e-76 291.2 746 36.9
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 8.6e-76 289.3 716 36.5
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 1.2e-74 285.4 737 37.7
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 2.1e-74 284.6 776 36.6
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.3e-73 281.2 752 38.7
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 5.2e-73 280.0 735 37.1
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.5e-72 278.5 792 37.9
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 5.8e-72 276.6 707 37.5
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 1.3e-71 275.4 773 36.6
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 1.7e-71 275.0 767 37.5
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 3.7e-71 273.9 810 34.7
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 8.3e-71 272.7 786 37.0
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.1e-70 272.3 781 35.2
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 1.4e-70 271.9 747 35.2
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 4.1e-70 270.4 770 36.6
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 4.6e-69 266.9 774 35.7
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 5.1e-68 263.5 736 38.2
arahy.Tifrunner.gnm1.ann1.XAW92V Arachis hypogaea HOM05D003765 ORTHO05D004561 1.9e-67 261.5 764 36.5
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 8.9e-65 252.7 752 36.3
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 4.9e-63 246.9 693 35.6
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 2.4e-62 244.6 757 34.5
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 5.4e-62 243.4 686 37.5
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 1.0e-60 239.2 481 44.1
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 1.3e-60 238.8 719 35.5
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.7e-60 238.4 711 35.2
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 1.1e-59 235.7 716 34.9
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 1.6e-58 231.9 721 35.4
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 3.6e-58 230.7 724 35.2
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 2.4e-57 228.0 709 34.6
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 3.1e-57 227.6 703 32.7
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 4.0e-57 227.3 725 33.0
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 1.5e-56 225.3 729 33.7
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.1e-54 219.2 731 33.8
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 2.4e-54 218.0 714 34.2
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 9.3e-54 216.1 700 33.4
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 1.7e-52 211.8 673 34.3
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 3.0e-52 211.1 637 35.3
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 3.9e-52 210.7 703 35.0
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.9e-51 208.4 711 33.9
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 4.3e-51 207.2 715 32.2
Lalb_Chr19g0131131 Lupinus albus HOM05D003765 ORTHO05D004561 7.3e-51 206.5 512 36.3
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 2.1e-50 204.9 632 34.8
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 1.1e-49 202.6 727 32.6
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 1.3e-47 195.7 758 32.2
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 1.7e-47 195.3 694 33.6
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 6.4e-47 193.4 755 32.8
VMungo0251G2630 Vigna mungo HOM05D003765 ORTHO05D004561 4.2e-46 190.7 118 82.2
VMungo0100G0003 Vigna mungo HOM05D003765 ORTHO05D004561 9.3e-46 189.5 138 72.5
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 2.7e-45 188.0 633 33.8
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 2.5e-43 181.4 743 31.8
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 1.3e-42 179.1 745 31.3
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 2.4e-41 174.9 750 29.2
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 1.5e-40 172.2 741 29.8
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 2.0e-40 171.8 722 30.7
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 3.4e-40 171.0 739 31.9
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.7e-39 168.7 693 31.7
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 2.9e-39 167.9 741 29.4
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.6e-37 162.2 755 27.9
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 2.7e-37 161.4 750 30.8
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 6.0e-37 160.2 703 30.9
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 1.3e-36 159.1 232 47.4
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 4.3e-35 154.1 676 29.3
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 2.1e-34 151.8 721 30.2
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 3.7e-34 151.0 735 30.3
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.8e-33 148.7 743 29.2
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 2.4e-33 148.3 729 29.2
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 2.0e-32 145.2 728 30.4
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 2.2e-31 141.7 708 29.5
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.6e-29 135.6 709 27.9
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 6.0e-29 133.7 202 48.0
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 4.8e-26 124.0 314 35.7
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 1.4e-25 122.5 450 30.4
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 4.1e-25 120.9 801 26.7
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 5.3e-25 120.6 570 30.0
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 6.9e-25 120.2 450 30.2
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 2.0e-24 118.6 318 35.8
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 1.0e-23 116.3 718 28.3
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 2.2e-23 115.2 455 32.5
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 3.8e-23 114.4 281 37.4
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 3.8e-23 114.4 507 30.2
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 1.1e-22 112.8 679 26.7
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 2.5e-22 111.7 438 32.4
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 3.2e-22 111.3 479 31.1
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 2.5e-19 101.7 504 29.6
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 3.3e-19 101.3 443 29.8
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 1.4e-17 95.9 263 35.4
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 1.0e-15 89.7 400 31.2
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 1.7e-15 89.0 430 30.2
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.7e-15 89.0 348 32.2
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 2.9e-15 88.2 397 30.0
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 5.0e-15 87.4 322 29.2
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 1.9e-14 85.5 409 30.8
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 2.5e-14 85.1 409 30.8
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 5.5e-14 84.0 339 32.7
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 2.1e-13 82.0 288 31.9
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 7.9e-13 80.1 194 39.2
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 7.9e-13 80.1 299 32.1
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 1.8e-12 79.0 354 28.8
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 1.1e-11 76.3 362 29.6
SEGI_17592 Sequoiadendron giganteum HOM05D003765 ORTHO05D004561 2.0e-11 75.5 154 30.5
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 5.7e-11 73.9 664 25.2
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 1.1e-09 69.7 375 30.9
VMungo0720G0588 Vigna mungo HOM05D003765 ORTHO05D004561 1.4e-09 69.3 184 32.6
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 3.1e-09 68.2 511 26.2
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 3.1e-09 68.2 291 29.6
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 3.1e-09 68.2 291 29.6
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 3.1e-09 68.2 191 31.9
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 9.1e-09 66.6 319 29.2
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 2.2e-07 62.0 182 25.3
HPP92_022144 Vanilla planifolia HOM05D003765 ORTHO05D004561 2.9e-07 61.6 181 28.2
Thecc.09G322100 Theobroma cacao HOM05D002515 ORTHO05D002722 6.5e-07 60.5 150 28.0
MD11G1109700 Malus domestica HOM05D002515 ORTHO05D002722 1.1e-06 59.7 144 27.8
Haze_24092 Corylus avellana HOM05D002515 ORTHO05D002722 1.9e-06 58.9 144 29.2
CSS0028630 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 4.2e-06 57.8 145 33.8
Duzib205G0479 Durio zibethinus HOM05D003765 ORTHO05D004561 4.2e-06 57.8 91 42.9
Zm00001eb418620 Zea mays HOM05D003765 ORTHO05D004561 5.5e-06 57.4 157 31.2
COL.COLO4_18507 Corchorus olitorius HOM05D002515 ORTHO05D002722 7.2e-06 57.0 142 29.6
Duzib168G0968 Durio zibethinus HOM05D002515 ORTHO05D002722 7.2e-06 57.0 149 28.9


User provided reference genes

Program Settings