Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 3.3e-53 211.5 108 100.0
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 3.4e-26 121.7 95 68.4
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 4.5e-26 121.3 96 66.7
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 7.9e-23 110.5 86 65.1
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 1.0e-22 110.2 97 64.9
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 1.8e-22 109.4 93 60.2
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 5.1e-22 107.8 97 56.7
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.1e-21 106.7 97 64.9
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 1.1e-21 106.7 94 57.4
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.6e-21 105.5 98 52.0
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 2.6e-21 105.5 97 53.6
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 4.4e-21 104.8 81 59.3
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 5.7e-21 104.4 94 55.3
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.4e-21 104.0 81 60.5
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.4e-21 104.0 81 60.5
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 7.4e-21 104.0 81 60.5
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 7.4e-21 104.0 81 54.3
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.3e-20 103.2 99 53.5
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 1.3e-20 103.2 83 60.2
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 2.8e-20 102.1 94 57.4
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 2.8e-20 102.1 85 60.0
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 2.8e-20 102.1 98 50.0
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 4.8e-20 101.3 86 61.6
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 4.8e-20 101.3 98 53.1
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 6.3e-20 100.9 94 57.4
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 1.1e-19 100.1 97 50.5
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.1e-19 100.1 83 56.6
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 1.8e-19 99.4 92 53.3
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 1.8e-19 99.4 83 59.0
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 4.1e-19 98.2 90 55.6
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 6.9e-19 97.4 67 62.7
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 6.9e-19 97.4 82 58.5
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 6.9e-19 97.4 95 51.6
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 6.9e-19 97.4 95 51.6
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 1.5e-18 96.3 93 50.5
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 2.0e-18 95.9 67 62.7
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 2.0e-18 95.9 82 53.7
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.4e-18 95.1 83 60.2
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 4.5e-18 94.7 97 49.5
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 7.7e-18 94.0 86 51.2
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 7.7e-18 94.0 92 54.3
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 1.0e-17 93.6 93 50.5
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.0e-17 93.6 97 48.5
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.0e-17 93.6 83 51.8
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.3e-17 93.2 97 47.4
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 1.3e-17 93.2 100 49.0
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.7e-17 92.8 109 44.0
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.7e-17 92.8 91 46.2
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 2.2e-17 92.4 83 53.0
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 2.2e-17 92.4 85 55.3
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 2.9e-17 92.0 97 52.6
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 3.8e-17 91.7 83 50.6
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 5.0e-17 91.3 94 48.9
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 5.0e-17 91.3 102 47.1
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 5.0e-17 91.3 84 58.3
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 5.0e-17 91.3 84 58.3
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 5.0e-17 91.3 84 58.3
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 6.5e-17 90.9 83 48.2
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 6.5e-17 90.9 97 50.5
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 8.5e-17 90.5 97 51.5
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 8.5e-17 90.5 82 54.9
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 8.5e-17 90.5 85 48.2
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 8.5e-17 90.5 102 46.1
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 8.5e-17 90.5 82 54.9
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.4e-16 89.7 90 51.1
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.4e-16 89.7 61 60.7
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.4e-16 89.7 61 60.7
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.5e-16 89.0 96 51.0
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 7.2e-16 87.4 96 51.0
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 7.2e-16 87.4 62 61.3
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 7.2e-16 87.4 82 50.0
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 7.2e-16 87.4 105 45.7
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.2e-15 86.7 83 48.2
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 1.2e-15 86.7 77 50.6
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 1.6e-15 86.3 62 59.7
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 1.6e-15 86.3 62 59.7
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 1.6e-15 86.3 80 47.5
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 2.7e-15 85.5 84 52.4
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 3.6e-15 85.1 77 50.6
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 4.7e-15 84.7 94 43.6
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 4.7e-15 84.7 81 53.1
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 4.7e-15 84.7 94 45.7
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 4.7e-15 84.7 81 55.6
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 6.1e-15 84.3 92 48.9
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 6.1e-15 84.3 62 58.1
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 6.1e-15 84.3 83 47.0
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 1.0e-14 83.6 83 47.0
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.4e-14 83.2 84 45.2
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 1.8e-14 82.8 83 47.0
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 1.8e-14 82.8 83 47.0
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 1.8e-14 82.8 83 47.0
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 2.3e-14 82.4 83 47.0
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 2.3e-14 82.4 90 44.4
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 3.0e-14 82.0 101 44.6
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 3.0e-14 82.0 88 46.6
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 3.0e-14 82.0 83 44.6
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 3.9e-14 81.6 87 42.5
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 5.2e-14 81.3 61 57.4
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 5.2e-14 81.3 95 43.2
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 5.2e-14 81.3 83 44.6
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 6.7e-14 80.9 67 53.7
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 6.7e-14 80.9 84 48.8
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 6.7e-14 80.9 84 44.0
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 6.7e-14 80.9 96 46.9
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 8.8e-14 80.5 85 43.5
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 8.8e-14 80.5 62 53.2
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 8.8e-14 80.5 62 53.2
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 1.1e-13 80.1 95 47.4
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.1e-13 80.1 53 66.0
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 1.5e-13 79.7 95 45.3
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 2.0e-13 79.3 84 45.2
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 2.6e-13 79.0 85 45.9
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 3.3e-13 78.6 84 42.9
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 3.3e-13 78.6 84 42.9
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 4.4e-13 78.2 84 50.0
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 5.7e-13 77.8 90 46.7
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 7.4e-13 77.4 91 39.6
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 7.4e-13 77.4 84 41.7
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 7.4e-13 77.4 85 51.8
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 9.7e-13 77.0 99 39.4
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 8.2e-12 73.9 64 51.6
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.1e-11 73.6 84 46.4
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.4e-11 73.2 84 44.0
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.8e-11 72.8 84 44.0
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 3.1e-11 72.0 82 42.7
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.1e-11 72.0 82 42.7
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 5.3e-11 71.2 96 42.7
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 9.1e-11 70.5 82 41.5
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 1.6e-10 69.7 95 41.1
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 7.7e-10 67.4 80 43.8
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.7e-09 66.2 82 42.7
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.9e-09 65.5 84 38.1
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 2.9e-09 65.5 84 36.9
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 2.7e-07 58.9 98 35.7
Os09g0525500 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 8.0e-07 57.4 88 39.8
SEGI_28530 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 1.8e-06 56.2 95 31.6


User provided reference genes

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